Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47055 * 2 1 4 4 C 1.53005 * 109.46920 * 240.00223 * 2 1 3 5 5 C 1.50697 * 109.46861 * 174.99884 * 4 2 1 6 6 H 1.08003 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99876 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47053 * 59.99724 * 9 7 5 11 11 H 1.48496 * 109.47351 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47232 * 300.00041 * 9 7 5 13 13 N 1.46893 * 109.47365 * 120.00108 * 2 1 3 14 14 C 1.47479 * 111.00130 * 295.00017 * 13 2 1 15 15 C 1.53517 * 87.99753 * 221.26429 * 14 13 2 16 16 O 1.42895 * 114.17317 * 272.40481 * 15 14 13 17 17 C 1.52996 * 114.16834 * 139.69722 * 15 14 13 18 18 C 1.53001 * 117.50105 * 253.74710 * 17 15 14 19 19 C 1.53000 * 117.50025 * 185.08572 * 17 15 14 20 20 C 1.47486 * 111.00063 * 199.02791 * 13 2 1 21 21 H 1.08999 * 109.46757 * 299.99650 * 1 2 3 22 22 H 1.09000 * 109.46929 * 60.00019 * 1 2 3 23 23 H 1.09001 * 109.47055 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47014 * 294.99617 * 4 2 1 25 25 H 1.09000 * 109.46959 * 55.00146 * 4 2 1 26 26 H 0.97000 * 119.99837 * 180.02562 * 8 7 5 27 27 H 1.09002 * 113.47562 * 336.06376 * 14 13 2 28 28 H 1.09003 * 113.47677 * 106.46979 * 14 13 2 29 29 H 0.96710 * 113.99756 * 50.33254 * 16 15 14 30 30 H 1.09005 * 115.55156 * 39.42256 * 17 15 14 31 31 H 1.08995 * 117.49533 * 0.02562 * 18 17 15 32 32 H 1.09004 * 117.49386 * 145.02417 * 18 17 15 33 33 H 1.08996 * 117.50017 * 214.98217 * 19 17 15 34 34 H 1.09005 * 117.49656 * 359.97438 * 19 17 15 35 35 H 1.09001 * 113.47573 * 253.46865 * 20 13 2 36 36 H 1.08996 * 113.47515 * 23.87978 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2304 -1.1926 -2.3585 8 7 3.5763 -1.8368 -3.3002 9 14 6.0919 -1.0601 -2.4376 10 1 6.6846 -1.6863 -1.2284 11 1 6.5869 -1.7602 -3.6500 12 1 6.4843 0.3709 -2.4968 13 7 2.0198 -0.6925 1.1993 14 6 1.6474 0.0420 2.4228 15 6 3.0491 -0.2643 2.9687 16 8 3.1490 -1.5122 3.6577 17 6 3.6957 0.8992 3.7230 18 6 4.8290 1.6521 3.0233 19 6 5.1394 0.7190 4.1964 20 6 3.4232 -0.3359 1.4796 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7714 -1.2056 25 1 1.6054 -0.2616 -2.1370 26 1 4.0606 -2.2435 -4.0356 27 1 1.4694 1.1041 2.2545 28 1 0.8472 -0.4348 2.9890 29 1 2.7894 -2.2631 3.1655 30 1 3.0256 1.4769 4.3599 31 1 5.1137 1.3188 2.0254 32 1 4.9047 2.7250 3.2001 33 1 5.4192 1.1785 5.1444 34 1 5.6284 -0.2286 3.9708 35 1 4.1286 -1.1336 1.2468 36 1 3.7194 0.6249 1.0586 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695880580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = 12.197735 kcal Electronic energy + Delta-G solvation = -16374.724763 eV Core-core repulsion = 13860.995969 eV Total energy + Delta-G solvation = -2513.728795 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.49878 -36.65308 -35.22102 -33.20745 -31.71250 -27.84429 -26.51780 -25.03240 -23.37998 -22.32757 -21.72263 -19.37784 -19.07383 -16.75337 -16.07563 -15.68502 -15.02565 -14.86021 -14.45055 -13.76947 -13.43471 -13.03257 -12.71674 -12.10063 -11.94091 -11.76366 -11.55832 -11.26751 -11.22508 -10.97870 -10.80467 -10.48679 -10.46908 -10.34775 -10.29634 -9.79774 -9.35352 -9.09174 -8.78238 -8.35584 -8.17996 -5.98796 -3.99783 3.31467 3.36848 3.38003 3.77890 4.43141 4.45321 4.55355 4.64829 4.98193 5.08402 5.31246 5.38675 5.43685 5.63520 5.74391 5.77729 5.84192 5.89761 5.95565 6.07090 6.14618 6.23048 6.29932 6.36379 6.44126 6.53883 6.67019 6.83355 7.16626 7.48426 7.66057 7.98245 7.98640 8.02365 8.41290 9.03911 9.62759 11.12832 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.010199 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.767024 B = 2744.644030 C = 3575.848327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 H 0.035 0.965 4 C 0.032 3.968 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.454 5.454 14 C -0.032 4.032 15 C 0.126 3.874 16 O -0.540 6.540 17 C -0.133 4.133 18 C -0.177 4.177 19 C -0.166 4.166 20 C -0.002 4.002 21 H 0.038 0.962 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.025 0.975 25 H 0.018 0.982 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.387 0.613 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 5.328 11.947 13.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.055 4.055 3 H 0.053 0.947 4 C -0.005 4.005 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.177 5.177 14 C -0.161 4.161 15 C 0.084 3.916 16 O -0.346 6.346 17 C -0.151 4.151 18 C -0.214 4.214 19 C -0.203 4.203 20 C -0.130 4.130 21 H 0.057 0.943 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.043 0.957 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.236 0.764 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.985 4.897 12.073 13.066 hybrid contribution 0.861 0.572 -0.721 1.260 sum -0.124 5.470 11.353 12.602 Atomic orbital electron populations 1.21828 0.96227 1.01690 1.00148 1.22331 0.93608 0.95988 0.93594 0.94673 1.19092 0.95718 0.96001 0.89677 1.21399 0.92214 1.34222 1.08042 0.92041 1.24985 0.97984 0.95486 0.95807 1.69953 1.35444 1.35984 1.12064 0.86770 0.86279 0.78149 0.77509 1.20183 1.21333 1.20347 1.68857 1.04715 1.43369 1.00799 1.24568 0.98062 0.98656 0.94854 1.21863 0.94631 0.84276 0.90827 1.86312 1.84640 1.16620 1.47015 1.21867 0.91447 0.98427 1.03403 1.23170 1.02027 0.97868 0.98369 1.22825 0.97850 1.01510 0.98087 1.24677 0.93913 1.02168 0.92291 0.94257 0.92707 0.92409 0.95672 0.96329 0.93045 0.91391 0.90284 0.76431 0.87518 0.87789 0.88688 0.89186 0.88346 0.89146 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.18 37.16 0.34 -2.14 16 2 C 0.05 1.09 1.94 -67.71 -0.13 0.96 16 3 H 0.04 0.73 7.56 -51.93 -0.39 0.34 16 4 C 0.03 0.83 4.65 -27.88 -0.13 0.70 16 5 C -0.52 -14.14 8.07 -34.44 -0.28 -14.42 16 6 H 0.06 1.58 4.57 -52.48 -0.24 1.34 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.45 -8.63 5.96 -236.31 -1.41 -10.04 16 14 C -0.03 -0.50 5.96 -7.54 -0.04 -0.54 16 15 C 0.13 1.97 1.85 -89.99 -0.17 1.81 16 16 O -0.54 -8.59 13.46 -35.23 -0.47 -9.07 16 17 C -0.13 -1.82 5.75 -90.62 -0.52 -2.34 16 18 C -0.18 -2.30 9.58 -26.69 -0.26 -2.55 16 19 C -0.17 -2.12 10.15 -26.69 -0.27 -2.39 16 20 C 0.00 -0.03 3.77 -7.44 -0.03 -0.06 16 21 H 0.04 0.60 7.34 -51.93 -0.38 0.22 16 22 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.07 1.03 7.80 -51.93 -0.40 0.62 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.39 5.59 8.83 45.56 0.40 5.99 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.10 1.50 6.19 -51.93 -0.32 1.18 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.87 7.78 -51.93 -0.40 1.47 16 36 H 0.08 1.55 4.84 -51.93 -0.25 1.30 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -29.68 286.39 -8.37 -38.04 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.93 Total: 5.82 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -1.58 Total: -19.43 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.67 Total: -36.10 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -0.47 Total: -9.07 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.68 -8.37 -38.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695880580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.240 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds