Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47055 * 2 1 4 4 C 1.53005 * 109.46920 * 240.00223 * 2 1 3 5 5 C 1.50697 * 109.46861 * 174.99884 * 4 2 1 6 6 H 1.08003 * 120.00531 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99876 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99629 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00088 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47053 * 59.99724 * 9 7 5 11 11 H 1.48496 * 109.47351 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47232 * 300.00041 * 9 7 5 13 13 N 1.46893 * 109.47365 * 120.00108 * 2 1 3 14 14 C 1.47479 * 111.00130 * 295.00017 * 13 2 1 15 15 C 1.53517 * 87.99753 * 221.26429 * 14 13 2 16 16 O 1.42895 * 114.17317 * 272.40481 * 15 14 13 17 17 C 1.52996 * 114.16834 * 139.69722 * 15 14 13 18 18 C 1.53001 * 117.50105 * 253.74710 * 17 15 14 19 19 C 1.53000 * 117.50025 * 185.08572 * 17 15 14 20 20 C 1.47486 * 111.00063 * 199.02791 * 13 2 1 21 21 H 1.08999 * 109.46757 * 299.99650 * 1 2 3 22 22 H 1.09000 * 109.46929 * 60.00019 * 1 2 3 23 23 H 1.09001 * 109.47055 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47014 * 294.99617 * 4 2 1 25 25 H 1.09000 * 109.46959 * 55.00146 * 4 2 1 26 26 H 0.97000 * 119.99837 * 180.02562 * 8 7 5 27 27 H 1.09002 * 113.47562 * 336.06376 * 14 13 2 28 28 H 1.09003 * 113.47677 * 106.46979 * 14 13 2 29 29 H 0.96710 * 113.99756 * 50.33254 * 16 15 14 30 30 H 1.09005 * 115.55156 * 39.42256 * 17 15 14 31 31 H 1.08995 * 117.49533 * 0.02562 * 18 17 15 32 32 H 1.09004 * 117.49386 * 145.02417 * 18 17 15 33 33 H 1.08996 * 117.50017 * 214.98217 * 19 17 15 34 34 H 1.09005 * 117.49656 * 359.97438 * 19 17 15 35 35 H 1.09001 * 113.47573 * 253.46865 * 20 13 2 36 36 H 1.08996 * 113.47515 * 23.87978 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2304 -1.1926 -2.3585 8 7 3.5763 -1.8368 -3.3002 9 14 6.0919 -1.0601 -2.4376 10 1 6.6846 -1.6863 -1.2284 11 1 6.5869 -1.7602 -3.6500 12 1 6.4843 0.3709 -2.4968 13 7 2.0198 -0.6925 1.1993 14 6 1.6474 0.0420 2.4228 15 6 3.0491 -0.2643 2.9687 16 8 3.1490 -1.5122 3.6577 17 6 3.6957 0.8992 3.7230 18 6 4.8290 1.6521 3.0233 19 6 5.1394 0.7190 4.1964 20 6 3.4232 -0.3359 1.4796 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.7517 -1.7714 -1.2056 25 1 1.6054 -0.2616 -2.1370 26 1 4.0606 -2.2435 -4.0356 27 1 1.4694 1.1041 2.2545 28 1 0.8472 -0.4348 2.9890 29 1 2.7894 -2.2631 3.1655 30 1 3.0256 1.4769 4.3599 31 1 5.1137 1.3188 2.0254 32 1 4.9047 2.7250 3.2001 33 1 5.4192 1.1785 5.1444 34 1 5.6284 -0.2286 3.9708 35 1 4.1286 -1.1336 1.2468 36 1 3.7194 0.6249 1.0586 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695880580.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -10.065905 kcal Electronic energy + Delta-G solvation = -16375.690187 eV Core-core repulsion = 13860.995969 eV Total energy + Delta-G solvation = -2514.694219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.86598 -37.90962 -36.51044 -35.10116 -33.47000 -29.71874 -27.88949 -26.48614 -25.21815 -23.49227 -23.02911 -20.95529 -20.32696 -18.60469 -17.46737 -17.16867 -16.61477 -16.25932 -16.11800 -15.16125 -14.81989 -14.60187 -14.10854 -13.76113 -13.56035 -13.23352 -13.17854 -12.97704 -12.61954 -12.57590 -12.36305 -12.28968 -11.99107 -11.76076 -11.44120 -11.22238 -10.98585 -10.76123 -10.54306 -10.38660 -9.68175 -8.16967 -6.24323 1.37066 1.39243 1.46064 2.40104 2.71287 3.10187 3.22030 3.29056 3.41398 3.79543 4.04256 4.16223 4.20744 4.26200 4.31923 4.47581 4.56351 4.63083 4.75477 4.81894 4.87519 4.96191 4.99608 5.11364 5.15701 5.25572 5.26976 5.30289 5.48416 5.53550 5.60486 5.86067 6.24261 6.32656 6.76202 6.89232 7.42674 8.95432 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022525 B = 0.010199 C = 0.007828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.767024 B = 2744.644030 C = 3575.848327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.035 0.965 4 C 0.037 3.963 5 C -0.527 4.527 6 H 0.074 0.926 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.473 5.473 14 C -0.021 4.021 15 C 0.138 3.862 16 O -0.545 6.545 17 C -0.141 4.141 18 C -0.176 4.176 19 C -0.163 4.163 20 C -0.005 4.005 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.049 0.951 24 H -0.010 1.010 25 H -0.008 1.008 26 H 0.260 0.740 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.391 0.609 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.704 6.845 14.046 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.053 0.947 4 C 0.000 4.000 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.777 3.223 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.196 5.196 14 C -0.150 4.150 15 C 0.096 3.904 16 O -0.352 6.352 17 C -0.160 4.160 18 C -0.213 4.213 19 C -0.200 4.200 20 C -0.134 4.134 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.069 0.931 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.112 0.888 29 H 0.240 0.760 30 H 0.148 0.852 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.637 6.422 14.191 15.589 hybrid contribution 0.731 0.064 -1.367 1.552 sum 0.094 6.486 12.824 14.371 Atomic orbital electron populations 1.21755 0.93794 1.01771 1.01833 1.22106 0.95562 0.94988 0.92086 0.94724 1.18954 0.95300 0.94241 0.91510 1.21847 0.93244 1.33446 1.07956 0.90790 1.25886 1.02967 0.95323 0.95598 1.70102 1.37377 1.37384 1.12900 0.85702 0.80398 0.78712 0.77525 1.19407 1.21315 1.18982 1.68795 1.05151 1.44268 1.01412 1.24569 0.98509 0.99220 0.92727 1.21814 0.94439 0.84898 0.89228 1.86314 1.84740 1.17018 1.47106 1.21975 0.92158 0.97902 1.03930 1.23193 1.01479 0.99221 0.97395 1.22884 0.96969 1.00961 0.99138 1.24610 0.93114 1.00601 0.95120 0.91174 0.92398 0.93134 0.99169 0.98983 0.93152 0.89927 0.88775 0.75959 0.85238 0.89888 0.86273 0.86708 0.90002 0.92250 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 9.18 71.98 0.66 -3.87 16 2 C 0.06 2.50 1.94 44.92 0.09 2.59 16 3 H 0.03 1.42 7.56 -2.39 -0.02 1.40 16 4 C 0.04 1.97 4.65 29.85 0.14 2.11 16 5 C -0.53 -29.24 8.07 25.60 0.21 -29.03 16 6 H 0.07 3.84 4.57 -2.91 -0.01 3.83 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 8 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 9 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 10 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.47 -17.65 5.96 -901.88 -5.37 -23.02 16 14 C -0.02 -0.61 5.96 83.58 0.50 -0.11 16 15 C 0.14 4.07 1.85 -10.38 -0.02 4.05 16 16 O -0.54 -16.52 13.46 -148.98 -2.00 -18.52 16 17 C -0.14 -3.44 5.75 -10.79 -0.06 -3.50 16 18 C -0.18 -4.11 9.58 30.62 0.29 -3.82 16 19 C -0.16 -3.73 10.15 30.62 0.31 -3.42 16 20 C -0.01 -0.19 3.77 83.64 0.32 0.12 16 21 H 0.07 1.94 7.34 -2.39 -0.02 1.92 16 22 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.08 2.18 7.80 -2.39 -0.02 2.17 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.39 10.98 8.83 -74.05 -0.65 10.32 16 30 H 0.13 2.61 8.14 -2.38 -0.02 2.60 16 31 H 0.08 2.31 6.19 -2.39 -0.01 2.29 16 32 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.06 2.51 7.78 -2.39 -0.02 2.49 16 36 H 0.08 2.85 4.84 -2.39 -0.01 2.84 16 Total: -1.00 -64.75 286.39 -1.76 -66.51 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.41 Total: 20.42 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 2.89 Total: -34.46 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -5.09 Total: -80.50 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -2.00 Total: -18.52 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -64.75 -1.76 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695880580.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.447 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds