Wall clock time and date at job start Mon Mar 30 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47427 * 2 1 4 4 C 1.53004 * 109.47031 * 119.99860 * 2 1 3 5 5 C 1.50700 * 115.54809 * 65.98791 * 4 2 1 6 6 O 1.21286 * 119.99854 * 236.32691 * 5 4 2 7 7 N 1.34776 * 120.00168 * 56.32422 * 5 4 2 8 8 C 1.46499 * 120.00072 * 185.26730 * 7 5 4 9 9 H 1.09004 * 109.46846 * 35.00344 * 8 7 5 10 10 C 1.52994 * 109.47383 * 275.00228 * 8 7 5 11 11 C 1.50693 * 109.47351 * 155.00145 * 8 7 5 12 12 H 1.08006 * 120.00331 * 34.09550 * 11 8 7 13 13 C 1.37884 * 120.00357 * 214.10068 * 11 8 7 14 14 N 1.31511 * 120.00193 * 183.45968 * 13 11 8 15 15 Si 1.86803 * 119.99655 * 3.45945 * 13 11 8 16 16 H 1.48498 * 109.46951 * 93.19387 * 15 13 11 17 17 H 1.48503 * 109.46756 * 213.19409 * 15 13 11 18 18 H 1.48501 * 109.46880 * 333.19294 * 15 13 11 19 19 C 1.53000 * 117.49939 * 211.65537 * 4 2 1 20 20 C 1.52993 * 117.49855 * 280.32003 * 4 2 1 21 21 H 1.08996 * 109.46780 * 304.66154 * 1 2 3 22 22 H 1.09004 * 109.46679 * 64.65687 * 1 2 3 23 23 H 1.09002 * 109.46946 * 184.65768 * 1 2 3 24 24 H 1.09002 * 109.47206 * 239.99957 * 2 1 3 25 25 H 1.08988 * 109.47047 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.46745 * 299.99821 * 3 2 1 27 27 H 1.08993 * 109.46751 * 59.99678 * 3 2 1 28 28 H 0.96997 * 119.99960 * 5.26768 * 7 5 4 29 29 H 1.09002 * 109.47804 * 175.16873 * 10 8 7 30 30 H 1.09000 * 109.47441 * 295.17077 * 10 8 7 31 31 H 1.09009 * 109.47172 * 55.16972 * 10 8 7 32 32 H 0.96995 * 120.00234 * 180.02562 * 14 13 11 33 33 H 1.08994 * 117.49557 * 215.00285 * 19 4 2 34 34 H 1.09003 * 117.49681 * 0.02562 * 19 4 2 35 35 H 1.09004 * 117.49916 * 359.96952 * 20 4 2 36 36 H 1.09003 * 117.49917 * 144.97818 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.7350 -2.1954 1.3187 6 8 1.1309 -2.6456 2.2692 7 7 2.1334 -3.0136 0.3246 8 6 1.7382 -4.4242 0.3341 9 1 0.7356 -4.5178 0.7514 10 6 2.7232 -5.2241 1.1890 11 6 1.7476 -4.9581 -1.0751 12 1 2.4764 -4.5956 -1.7851 13 6 0.8259 -5.9093 -1.4582 14 7 0.8766 -6.4249 -2.6670 15 14 -0.4951 -6.4655 -0.2602 16 1 -1.7211 -5.6524 -0.4628 17 1 -0.8064 -7.8981 -0.4969 18 1 -0.0077 -6.2881 1.1313 19 6 3.3647 -0.2449 1.8488 20 6 2.0463 0.0615 2.5638 21 1 -0.3633 0.5845 0.8453 22 1 -0.3633 0.4399 -0.9288 23 1 -0.3633 -1.0243 0.0835 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8899 28 1 2.6818 -2.6684 -0.3972 29 1 2.3821 -6.2564 1.2666 30 1 3.7091 -5.2013 0.7247 31 1 2.7803 -4.7844 2.1848 32 1 0.2280 -7.0937 -2.9366 33 1 4.0154 -0.9978 2.2934 34 1 3.8726 0.5826 1.3534 35 1 1.6875 1.0905 2.5385 36 1 1.8295 -0.4897 3.4789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697565927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:18 Heat of formation + Delta-G solvation = -52.074077 kcal Electronic energy + Delta-G solvation = -16187.147800 eV Core-core repulsion = 13670.631971 eV Total energy + Delta-G solvation = -2516.515830 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27382 -38.60829 -36.67079 -34.39343 -33.74288 -31.65317 -28.12737 -27.36034 -25.77888 -23.32475 -22.93796 -21.64248 -20.32602 -18.80488 -17.89282 -17.30112 -16.50146 -16.13744 -15.35327 -15.25397 -15.15277 -14.61599 -14.29391 -13.87085 -13.79811 -13.27776 -13.10794 -12.94998 -12.82816 -12.70790 -12.48621 -12.40077 -11.96389 -11.89554 -11.88073 -11.28628 -11.20315 -10.90887 -10.78301 -10.56135 -9.82183 -8.41519 -6.47447 1.24792 1.30203 1.41800 1.69638 2.24141 2.42739 2.83232 3.01536 3.65968 3.85639 3.90685 4.01396 4.26568 4.40474 4.42406 4.58106 4.69254 4.71166 4.79097 4.85040 4.90193 4.95507 5.04826 5.07854 5.10481 5.25603 5.28922 5.33874 5.41726 5.42614 5.51169 5.73825 6.10665 6.56786 6.90623 7.18359 7.45791 8.73518 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.033459 B = 0.008098 C = 0.007628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.648344 B = 3456.769437 C = 3669.825650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.169 4.169 5 C 0.535 3.465 6 O -0.601 6.601 7 N -0.699 5.699 8 C 0.233 3.767 9 H 0.027 0.973 10 C -0.141 4.141 11 C -0.525 4.525 12 H 0.057 0.943 13 C 0.034 3.966 14 N -0.928 5.928 15 Si 0.923 3.077 16 H -0.275 1.275 17 H -0.273 1.273 18 H -0.257 1.257 19 C -0.140 4.140 20 C -0.143 4.143 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.018 0.982 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.403 0.597 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.271 0.729 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 15.566 6.294 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.172 4.172 5 C 0.322 3.678 6 O -0.483 6.483 7 N -0.347 5.347 8 C 0.130 3.870 9 H 0.045 0.955 10 C -0.200 4.200 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.166 4.166 14 N -0.567 5.567 15 Si 0.748 3.252 16 H -0.201 1.201 17 H -0.198 1.198 18 H -0.181 1.181 19 C -0.177 4.177 20 C -0.180 4.180 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.037 0.963 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.238 0.762 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.156 0.844 35 H 0.147 0.853 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.071 15.078 6.800 16.823 hybrid contribution -0.655 -0.935 -0.159 1.153 sum 2.416 14.143 6.641 15.810 Atomic orbital electron populations 1.21795 0.95591 1.00222 1.02588 1.20561 0.95314 0.97311 0.93873 1.21956 1.02005 0.93032 1.03023 1.21557 1.06539 0.90151 0.98949 1.20293 0.77722 0.88286 0.81469 1.90594 1.44299 1.78479 1.34954 1.46317 1.52556 1.10415 1.25367 1.18921 0.94353 0.78881 0.94892 0.95492 1.22113 1.00394 0.99536 0.97911 1.21170 1.16695 1.22947 0.95519 0.92470 1.25573 0.98885 0.95874 0.96279 1.69968 1.37455 1.29342 1.19912 0.86098 0.80157 0.78211 0.80758 1.20069 1.19796 1.18120 1.23292 0.89314 1.03461 1.01669 1.23066 1.00490 1.01101 0.93347 0.91682 0.91062 0.96279 0.91137 0.90730 0.91322 0.91259 0.76165 0.93362 0.92323 0.94678 0.91976 0.89456 0.84383 0.85307 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.13 71.98 0.66 -3.19 16 2 C -0.05 -1.25 2.98 -10.79 -0.03 -1.28 16 3 C -0.14 -2.26 8.22 71.98 0.59 -1.66 16 4 C -0.17 -4.74 1.91 -52.93 -0.10 -4.84 16 5 C 0.53 21.25 6.45 87.66 0.57 21.82 16 6 O -0.60 -28.77 16.14 -3.05 -0.05 -28.82 16 7 N -0.70 -29.05 5.04 -446.11 -2.25 -31.30 16 8 C 0.23 11.42 2.10 44.24 0.09 11.51 16 9 H 0.03 1.45 4.74 -2.38 -0.01 1.44 16 10 C -0.14 -6.29 9.46 71.98 0.68 -5.61 16 11 C -0.53 -28.87 9.05 25.60 0.23 -28.64 16 12 H 0.06 3.33 8.06 -2.91 -0.02 3.31 16 13 C 0.03 1.96 5.47 84.66 0.46 2.42 16 14 N -0.93 -55.62 13.96 21.45 0.30 -55.33 16 15 Si 0.92 45.21 27.03 68.60 1.85 47.07 16 16 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.26 -12.48 6.49 99.48 0.65 -11.83 16 19 C -0.14 -2.98 9.51 30.62 0.29 -2.69 16 20 C -0.14 -3.37 9.38 30.62 0.29 -3.08 16 21 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.02 0.63 7.60 -2.39 -0.02 0.61 16 24 H 0.07 1.82 7.94 -2.39 -0.02 1.80 16 25 H 0.07 0.97 6.31 -2.39 -0.02 0.95 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.95 6.40 -2.39 -0.02 0.94 16 28 H 0.40 14.99 8.40 -92.71 -0.78 14.21 16 29 H 0.05 2.15 7.95 -2.39 -0.02 2.13 16 30 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 34 H 0.14 2.02 6.06 -2.39 -0.01 2.00 16 35 H 0.13 2.25 6.48 -2.38 -0.02 2.24 16 36 H 0.08 2.26 7.84 -2.39 -0.02 2.24 16 Total: -1.00 -67.69 291.37 3.81 -63.89 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.22 Total: 19.74 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.73 Total: -15.25 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.95 Total: -86.62 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.05 Total: -28.82 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.85 Total: 47.07 kcal Total: -67.69 3.81 -63.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697565927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.812 kcal (2) G-P(sol) polarization free energy of solvation -67.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds