Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46952 * 2 1 4 4 C 1.52997 * 109.47733 * 239.99579 * 2 1 3 5 5 N 1.46501 * 109.46918 * 64.99671 * 4 2 1 6 6 C 1.46508 * 119.99697 * 90.00545 * 5 4 2 7 7 C 1.34777 * 120.00358 * 270.00607 * 5 4 2 8 8 O 1.21682 * 119.99882 * 359.97438 * 7 5 4 9 9 C 1.46371 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.08000 * 120.00442 * 359.97438 * 9 7 5 11 11 C 1.40046 * 120.00285 * 179.97438 * 9 7 5 12 12 N 1.30679 * 119.99535 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00392 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47193 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47227 * 120.00320 * 13 11 9 16 16 H 1.48505 * 109.47098 * 240.00175 * 13 11 9 17 17 C 1.53006 * 109.47073 * 119.99461 * 2 1 3 18 18 C 1.53780 * 113.61448 * 279.14299 * 17 2 1 19 19 C 1.53948 * 87.01697 * 220.04552 * 18 17 2 20 20 C 1.53780 * 87.11633 * 25.36271 * 19 18 17 21 21 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47942 * 300.00464 * 1 2 3 23 23 H 1.09002 * 109.46948 * 60.00520 * 1 2 3 24 24 H 1.08992 * 109.47792 * 185.00102 * 4 2 1 25 25 H 1.09004 * 109.47020 * 305.00488 * 4 2 1 26 26 H 1.08991 * 109.47151 * 89.99770 * 6 5 4 27 27 H 1.08997 * 109.46818 * 209.99874 * 6 5 4 28 28 H 1.08999 * 109.46693 * 329.99804 * 6 5 4 29 29 H 0.97004 * 119.99843 * 179.97438 * 12 11 9 30 30 H 1.09002 * 112.84791 * 50.33616 * 17 2 1 31 31 H 1.09000 * 113.61461 * 334.56153 * 18 17 2 32 32 H 1.08995 * 113.61894 * 105.46890 * 18 17 2 33 33 H 1.09005 * 113.54029 * 270.80899 * 19 18 17 34 34 H 1.09010 * 113.74678 * 139.94278 * 19 18 17 35 35 H 1.08994 * 113.61871 * 220.09800 * 20 19 18 36 36 H 1.08997 * 113.61428 * 89.18288 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.5429 1.0695 -2.9751 7 6 0.4769 -0.2203 -3.0499 8 8 -0.2624 -1.0797 -2.6077 9 6 0.0900 0.5352 -4.2424 10 1 0.7463 1.2977 -4.6352 11 6 -1.1313 0.2694 -4.8741 12 7 -1.9257 -0.6528 -4.3985 13 14 -1.6255 1.2340 -6.3955 14 1 -0.5601 2.2135 -6.7282 15 1 -1.8120 0.3000 -7.5349 16 1 -2.8970 1.9549 -6.1332 17 6 2.0399 -0.7212 1.2494 18 6 2.0342 0.1560 2.5124 19 6 3.3853 -0.4898 2.8695 20 6 3.5733 -0.7442 1.3646 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.1263 -0.7995 -1.2055 25 1 1.6054 -1.7199 -1.2950 26 1 3.2231 0.6245 -3.7012 27 1 1.9498 1.8446 -3.4604 28 1 3.1180 1.5088 -2.1600 29 1 -2.7719 -0.8367 -4.8358 30 1 1.5765 -1.6972 1.3935 31 1 2.1023 1.2235 2.3030 32 1 1.2340 -0.0891 3.2107 33 1 3.2897 -1.4023 3.4581 34 1 4.1092 0.2097 3.2878 35 1 4.0135 -1.7151 1.1375 36 1 4.0628 0.0768 0.8408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700897402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = -30.360098 kcal Electronic energy + Delta-G solvation = -16133.736783 eV Core-core repulsion = 13618.162542 eV Total energy + Delta-G solvation = -2515.574241 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.14922 -37.48673 -34.15922 -32.38610 -32.06585 -27.19360 -25.92661 -25.58630 -24.99358 -23.80135 -20.40922 -19.18469 -18.79962 -16.38712 -15.57890 -15.30674 -15.10163 -14.24281 -14.07668 -13.74162 -13.10161 -12.51101 -12.31216 -12.15187 -11.98250 -11.65787 -11.35651 -11.24581 -11.17826 -11.05304 -10.80552 -10.65323 -10.42803 -10.22738 -10.11579 -9.96202 -9.83098 -9.57768 -8.81695 -7.49320 -7.06999 -6.14911 -4.59626 3.14060 3.22580 3.26532 4.12335 4.58493 4.66005 4.81880 4.85292 4.96341 5.06590 5.58649 5.68922 5.77840 5.85233 5.88844 5.96772 5.97875 5.99063 6.09467 6.13511 6.21587 6.32848 6.42242 6.58576 6.59467 6.66327 6.72480 6.78871 7.03035 7.32658 7.48449 7.72318 8.21264 8.43408 9.06930 9.50915 10.63149 10.83143 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053753 B = 0.006498 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.780714 B = 4308.080611 C = 4536.134265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.059 0.941 4 C 0.134 3.866 5 N -0.649 5.649 6 C 0.103 3.897 7 C 0.557 3.443 8 O -0.571 6.571 9 C -0.545 4.545 10 H 0.071 0.929 11 C 0.088 3.912 12 N -0.768 5.768 13 Si 0.903 3.097 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.144 4.144 20 C -0.137 4.137 21 H 0.054 0.946 22 H 0.030 0.970 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.029 0.971 27 H 0.069 0.931 28 H 0.038 0.962 29 H 0.266 0.734 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.561 2.764 8.525 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.009 3.991 5 N -0.387 5.387 6 C -0.041 4.041 7 C 0.363 3.637 8 O -0.453 6.453 9 C -0.582 4.582 10 H 0.089 0.911 11 C -0.131 4.131 12 N -0.397 5.397 13 Si 0.728 3.272 14 H -0.188 1.188 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.120 4.120 18 C -0.173 4.173 19 C -0.181 4.181 20 C -0.175 4.175 21 H 0.073 0.927 22 H 0.049 0.951 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.976 2.181 8.735 12.028 hybrid contribution -0.152 0.583 -0.779 0.985 sum 7.823 2.764 7.956 11.495 Atomic orbital electron populations 1.21682 0.94169 1.02171 1.00643 1.21521 0.97101 0.98623 0.93903 0.92287 1.21016 0.96990 0.96264 0.84799 1.47977 1.21826 1.39769 1.29126 1.21350 0.93700 0.92020 0.97055 1.18169 0.78369 0.83375 0.83786 1.90594 1.51382 1.35971 1.67403 1.21068 1.04438 1.21398 1.11322 0.91128 1.25715 0.95839 0.94145 0.97442 1.70037 1.08252 1.25437 1.35944 0.86385 0.78970 0.80084 0.81734 1.18813 1.20227 1.20226 1.22558 0.95318 0.99355 0.94767 1.22952 0.97017 0.99470 0.97834 1.22845 0.97831 1.00585 0.96838 1.22920 0.96987 1.01644 0.95904 0.92689 0.95119 0.91351 0.93269 0.91231 0.95297 0.91189 0.94320 0.92294 0.89535 0.90418 0.91990 0.90640 0.92033 0.91842 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 7.92 37.15 0.29 -2.36 16 2 C -0.09 -1.61 2.32 -90.62 -0.21 -1.82 16 3 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 4 C 0.13 2.64 4.89 -4.04 -0.02 2.62 16 5 N -0.65 -14.86 2.76 -183.25 -0.51 -15.37 16 6 C 0.10 1.95 10.15 59.85 0.61 2.56 16 7 C 0.56 15.71 6.19 -12.99 -0.08 15.63 16 8 O -0.57 -17.91 12.81 5.20 0.07 -17.85 16 9 C -0.55 -15.35 8.74 -35.63 -0.31 -15.66 16 10 H 0.07 1.83 6.00 -52.49 -0.31 1.52 16 11 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 12 N -0.77 -22.94 11.83 55.55 0.66 -22.29 16 13 Si 0.90 20.19 29.56 -169.99 -5.02 15.17 16 14 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.10 -1.44 3.11 -89.80 -0.28 -1.72 16 18 C -0.14 -1.68 7.63 -25.83 -0.20 -1.87 16 19 C -0.14 -1.56 8.09 -25.83 -0.21 -1.77 16 20 C -0.14 -1.68 6.66 -25.92 -0.17 -1.85 16 21 H 0.05 1.21 8.00 -51.93 -0.42 0.79 16 22 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 1.68 6.06 -51.93 -0.31 1.37 16 24 H 0.05 0.84 7.26 -51.93 -0.38 0.46 16 25 H 0.07 1.55 7.42 -51.93 -0.39 1.16 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.37 6.09 -51.93 -0.32 1.05 16 28 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 29 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 0.96 7.99 -51.93 -0.41 0.55 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 287.72 15.07 4.34 4.34 Total: -1.00 -32.12 287.72 -7.03 -39.15 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.89 Total: 0.73 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.67 Total: -3.88 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.15 Total: -37.65 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.07 Total: -17.85 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.12 -7.03 -39.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700897402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.789 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds