Wall clock time and date at job start Mon Mar 30 2020 03:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46952 * 2 1 4 4 C 1.52997 * 109.47733 * 239.99579 * 2 1 3 5 5 N 1.46501 * 109.46918 * 64.99671 * 4 2 1 6 6 C 1.46508 * 119.99697 * 90.00545 * 5 4 2 7 7 C 1.34777 * 120.00358 * 270.00607 * 5 4 2 8 8 O 1.21682 * 119.99882 * 359.97438 * 7 5 4 9 9 C 1.46371 * 119.99994 * 180.02562 * 7 5 4 10 10 H 1.08000 * 120.00442 * 359.97438 * 9 7 5 11 11 C 1.40046 * 120.00285 * 179.97438 * 9 7 5 12 12 N 1.30679 * 119.99535 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00392 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47193 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47227 * 120.00320 * 13 11 9 16 16 H 1.48505 * 109.47098 * 240.00175 * 13 11 9 17 17 C 1.53006 * 109.47073 * 119.99461 * 2 1 3 18 18 C 1.53780 * 113.61448 * 279.14299 * 17 2 1 19 19 C 1.53948 * 87.01697 * 220.04552 * 18 17 2 20 20 C 1.53780 * 87.11633 * 25.36271 * 19 18 17 21 21 H 1.09003 * 109.47383 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47942 * 300.00464 * 1 2 3 23 23 H 1.09002 * 109.46948 * 60.00520 * 1 2 3 24 24 H 1.08992 * 109.47792 * 185.00102 * 4 2 1 25 25 H 1.09004 * 109.47020 * 305.00488 * 4 2 1 26 26 H 1.08991 * 109.47151 * 89.99770 * 6 5 4 27 27 H 1.08997 * 109.46818 * 209.99874 * 6 5 4 28 28 H 1.08999 * 109.46693 * 329.99804 * 6 5 4 29 29 H 0.97004 * 119.99843 * 179.97438 * 12 11 9 30 30 H 1.09002 * 112.84791 * 50.33616 * 17 2 1 31 31 H 1.09000 * 113.61461 * 334.56153 * 18 17 2 32 32 H 1.08995 * 113.61894 * 105.46890 * 18 17 2 33 33 H 1.09005 * 113.54029 * 270.80899 * 19 18 17 34 34 H 1.09010 * 113.74678 * 139.94278 * 19 18 17 35 35 H 1.08994 * 113.61871 * 220.09800 * 20 19 18 36 36 H 1.08997 * 113.61428 * 89.18288 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6525 0.0352 -2.4423 6 6 2.5429 1.0695 -2.9751 7 6 0.4769 -0.2203 -3.0499 8 8 -0.2624 -1.0797 -2.6077 9 6 0.0900 0.5352 -4.2424 10 1 0.7463 1.2977 -4.6352 11 6 -1.1313 0.2694 -4.8741 12 7 -1.9257 -0.6528 -4.3985 13 14 -1.6255 1.2340 -6.3955 14 1 -0.5601 2.2135 -6.7282 15 1 -1.8120 0.3000 -7.5349 16 1 -2.8970 1.9549 -6.1332 17 6 2.0399 -0.7212 1.2494 18 6 2.0342 0.1560 2.5124 19 6 3.3853 -0.4898 2.8695 20 6 3.5733 -0.7442 1.3646 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.1263 -0.7995 -1.2055 25 1 1.6054 -1.7199 -1.2950 26 1 3.2231 0.6245 -3.7012 27 1 1.9498 1.8446 -3.4604 28 1 3.1180 1.5088 -2.1600 29 1 -2.7719 -0.8367 -4.8358 30 1 1.5765 -1.6972 1.3935 31 1 2.1023 1.2235 2.3030 32 1 1.2340 -0.0891 3.2107 33 1 3.2897 -1.4023 3.4581 34 1 4.1092 0.2097 3.2878 35 1 4.0135 -1.7151 1.1375 36 1 4.0628 0.0768 0.8408 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700897402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:26 Heat of formation + Delta-G solvation = -50.253769 kcal Electronic energy + Delta-G solvation = -16134.599437 eV Core-core repulsion = 13618.162542 eV Total energy + Delta-G solvation = -2516.436895 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.47428 -39.21234 -36.01879 -34.53314 -33.65130 -29.03725 -27.68951 -27.01471 -26.11397 -25.35159 -21.97003 -20.60688 -20.25798 -18.36011 -17.61715 -16.61168 -16.39563 -15.99136 -15.79005 -15.19787 -14.66894 -14.23746 -13.70466 -13.46448 -13.32195 -13.25364 -13.04611 -13.02743 -12.80515 -12.59592 -12.53299 -12.22778 -11.97896 -11.91394 -11.64619 -11.30137 -11.01492 -10.90385 -10.82236 -9.66643 -8.93276 -8.24356 -6.78982 1.39274 1.39525 1.56648 2.25292 2.52037 2.96871 3.64905 3.77859 3.81041 3.90325 4.04747 4.15685 4.45230 4.51742 4.57505 4.66996 4.80567 4.85433 4.92474 4.95208 4.96952 5.02694 5.05281 5.09838 5.14895 5.22298 5.37777 5.40446 5.47253 5.54950 5.71336 5.85958 6.19812 6.51495 6.92490 7.50635 8.55264 8.74274 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053753 B = 0.006498 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.780714 B = 4308.080611 C = 4536.134265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.079 4.079 3 H 0.070 0.930 4 C 0.134 3.866 5 N -0.653 5.653 6 C 0.100 3.900 7 C 0.542 3.458 8 O -0.618 6.618 9 C -0.573 4.573 10 H 0.088 0.912 11 C 0.030 3.970 12 N -0.823 5.823 13 Si 0.991 3.009 14 H -0.247 1.247 15 H -0.270 1.270 16 H -0.270 1.270 17 C -0.109 4.109 18 C -0.134 4.134 19 C -0.131 4.131 20 C -0.133 4.133 21 H 0.026 0.974 22 H 0.053 0.947 23 H 0.020 0.980 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.271 0.729 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.579 4.445 8.812 14.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.010 3.990 5 N -0.389 5.389 6 C -0.043 4.043 7 C 0.347 3.653 8 O -0.504 6.504 9 C -0.609 4.609 10 H 0.106 0.894 11 C -0.185 4.185 12 N -0.453 5.453 13 Si 0.811 3.189 14 H -0.169 1.169 15 H -0.195 1.195 16 H -0.195 1.195 17 C -0.128 4.128 18 C -0.171 4.171 19 C -0.168 4.168 20 C -0.170 4.170 21 H 0.045 0.955 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.102 0.898 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.056 3.885 9.043 14.071 hybrid contribution -0.741 0.037 -0.814 1.102 sum 9.315 3.922 8.229 13.033 Atomic orbital electron populations 1.21527 0.96812 0.99884 0.99308 1.21412 0.94563 0.99364 0.94585 0.91162 1.21162 0.98712 0.94448 0.84677 1.47889 1.20947 1.40460 1.29627 1.21529 0.93226 0.90847 0.98697 1.18502 0.79553 0.82986 0.84233 1.90549 1.53411 1.37822 1.68646 1.21584 1.05436 1.22064 1.11846 0.89359 1.26926 0.95427 0.94953 1.01184 1.70210 1.09059 1.27740 1.38241 0.85068 0.78935 0.78473 0.76428 1.16943 1.19520 1.19541 1.22548 0.97278 0.98979 0.93964 1.22969 0.98317 0.99341 0.96498 1.22792 0.96917 1.01136 0.95964 1.22928 0.94641 1.02290 0.97161 0.95481 0.92789 0.96039 0.89758 0.94776 0.93992 0.92133 0.90503 0.91885 0.90652 0.90037 0.91763 0.89807 0.90257 0.91322 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.02 7.92 71.98 0.57 -4.45 16 2 C -0.08 -2.75 2.32 -10.79 -0.03 -2.78 16 3 H 0.07 2.29 7.98 -2.38 -0.02 2.27 16 4 C 0.13 5.27 4.89 86.38 0.42 5.69 16 5 N -0.65 -30.01 2.76 -851.90 -2.35 -32.37 16 6 C 0.10 3.60 10.15 127.77 1.30 4.89 16 7 C 0.54 31.63 6.19 86.36 0.53 32.17 16 8 O -0.62 -41.03 12.81 -4.29 -0.05 -41.09 16 9 C -0.57 -32.77 8.74 24.83 0.22 -32.56 16 10 H 0.09 4.56 6.00 -2.91 -0.02 4.54 16 11 C 0.03 1.68 5.50 85.30 0.47 2.15 16 12 N -0.82 -51.07 11.83 21.84 0.26 -50.81 16 13 Si 0.99 41.65 29.56 68.60 2.03 43.68 16 14 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 15 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 17 C -0.11 -2.95 3.11 -10.27 -0.03 -2.98 16 18 C -0.13 -2.97 7.63 31.18 0.24 -2.73 16 19 C -0.13 -2.38 8.09 31.18 0.25 -2.13 16 20 C -0.13 -2.83 6.66 31.12 0.21 -2.62 16 21 H 0.03 1.25 8.00 -2.39 -0.02 1.23 16 22 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.02 1.08 6.06 -2.39 -0.01 1.07 16 24 H 0.08 2.71 7.26 -2.39 -0.02 2.69 16 25 H 0.03 1.58 7.42 -2.39 -0.02 1.56 16 26 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 2.28 6.09 -2.39 -0.01 2.27 16 28 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 29 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 1.77 7.99 -2.39 -0.02 1.75 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -73.75 287.72 5.07 -68.68 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 1.04 Total: 17.26 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: 4.15 Total: -5.35 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -2.09 Total: -83.18 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.05 Total: -41.09 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -73.75 5.07 -68.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700897402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.426 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds