Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.50706 * 109.47060 * 240.00048 * 2 1 3 5 5 H 1.07996 * 120.00231 * 245.62718 * 4 2 1 6 6 C 1.37883 * 119.99538 * 65.63081 * 4 2 1 7 7 N 1.31517 * 119.99569 * 197.50781 * 6 4 2 8 8 Si 1.86800 * 120.00419 * 17.50585 * 6 4 2 9 9 H 1.48493 * 109.46979 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46542 * 60.00165 * 8 6 4 11 11 H 1.48496 * 109.47254 * 300.00561 * 8 6 4 12 12 N 1.46902 * 109.47246 * 120.00278 * 2 1 3 13 13 C 1.46897 * 110.99802 * 275.00313 * 12 2 1 14 14 H 1.09002 * 110.45824 * 34.29585 * 13 12 2 15 15 C 1.54479 * 110.50811 * 271.69068 * 13 12 2 16 16 O 1.44650 * 104.69606 * 217.47399 * 15 13 12 17 17 C 1.44427 * 105.36513 * 40.35140 * 16 15 13 18 18 H 1.09001 * 110.37578 * 78.39352 * 17 16 15 19 19 C 1.53002 * 110.37175 * 200.73293 * 17 16 15 20 20 C 1.53005 * 117.49432 * 4.12731 * 19 17 16 21 21 C 1.52995 * 117.49668 * 295.46849 * 19 17 16 22 22 C 1.54476 * 104.80313 * 319.56236 * 17 16 15 23 23 H 1.09005 * 109.47047 * 186.33167 * 1 2 3 24 24 H 1.08995 * 109.47112 * 306.33281 * 1 2 3 25 25 H 1.09001 * 109.47163 * 66.34002 * 1 2 3 26 26 H 0.97004 * 119.99898 * 354.88704 * 7 6 4 27 27 H 1.00904 * 110.99367 * 38.95102 * 12 2 1 28 28 H 1.09001 * 110.37639 * 336.21289 * 15 13 12 29 29 H 1.09005 * 110.36994 * 98.55108 * 15 13 12 30 30 H 1.09001 * 115.55158 * 149.79313 * 19 17 16 31 31 H 1.08999 * 117.50017 * 359.97438 * 20 19 17 32 32 H 1.08999 * 117.49638 * 145.02591 * 20 19 17 33 33 H 1.09001 * 117.50069 * 214.97978 * 21 19 17 34 34 H 1.09004 * 117.50211 * 0.02562 * 21 19 17 35 35 H 1.09008 * 110.51645 * 265.33692 * 22 17 16 36 36 H 1.09003 * 110.63287 * 142.68501 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5762 -1.6384 -1.1341 6 6 1.7976 -0.1755 -2.4795 7 7 1.9162 -0.9293 -3.5506 8 14 1.3110 1.6200 -2.6502 9 1 1.1180 1.9461 -4.0860 10 1 2.3839 2.4791 -2.0878 11 1 0.0452 1.8621 -1.9124 12 7 2.0197 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2708 0.9485 2.3000 15 6 3.4493 0.9407 2.3922 16 8 3.7706 1.0297 3.7998 17 6 3.3666 -0.2364 4.3653 18 1 4.1078 -1.0045 4.1443 19 6 3.1679 -0.1055 5.8767 20 6 3.3210 1.2873 6.4913 21 6 4.3976 0.2246 6.7249 22 6 2.0259 -0.5679 3.6733 23 1 -0.3633 -1.0214 0.1133 24 1 -0.3633 0.6088 0.8278 25 1 -0.3633 0.4124 -0.9413 26 1 2.2402 -1.8401 -3.4692 27 1 1.4495 -1.4980 1.4099 28 1 4.2037 0.3544 1.8677 29 1 3.3696 1.9362 1.9552 30 1 2.4195 -0.7680 6.3116 31 1 3.5637 2.1102 5.8189 32 1 2.6737 1.5408 7.3308 33 1 4.4583 -0.2206 7.7180 34 1 5.3483 0.3489 6.2062 35 1 1.1876 -0.2309 4.2832 36 1 1.9488 -1.6374 3.4776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700990932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = -22.749140 kcal Electronic energy + Delta-G solvation = -15873.515796 eV Core-core repulsion = 13358.271591 eV Total energy + Delta-G solvation = -2515.244205 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61814 -36.80501 -35.54554 -32.72110 -30.99091 -29.06999 -26.75799 -24.74410 -23.57831 -22.35452 -20.60455 -20.29082 -19.82685 -17.45037 -16.25263 -15.82413 -15.31783 -14.83500 -14.38255 -14.00802 -13.51906 -13.34643 -13.17594 -12.33012 -12.01379 -11.79435 -11.54947 -11.49951 -11.31490 -11.07085 -10.82727 -10.79022 -10.45075 -10.20903 -10.05300 -9.95932 -9.72434 -9.44374 -8.98170 -8.18996 -7.53514 -6.42172 -4.01018 3.36083 3.42103 3.58858 3.72773 4.07478 4.48818 4.54918 4.82689 4.90982 4.93923 4.99532 5.26251 5.28004 5.33994 5.58615 5.61015 5.63749 5.81279 5.91589 5.97437 6.04555 6.12749 6.19502 6.23858 6.27338 6.30758 6.38463 6.60485 6.79036 7.06774 7.18566 7.77652 8.21668 8.30694 8.46838 9.02619 9.66433 10.97644 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053434 B = 0.005934 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.886763 B = 4717.461146 C = 4799.937748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.187 3.813 3 H 0.026 0.974 4 C -0.583 4.583 5 H 0.062 0.938 6 C 0.027 3.973 7 N -0.909 5.909 8 Si 1.044 2.956 9 H -0.285 1.285 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.665 5.665 13 C 0.052 3.948 14 H 0.049 0.951 15 C 0.056 3.944 16 O -0.378 6.378 17 C 0.109 3.891 18 H 0.072 0.928 19 C -0.155 4.155 20 C -0.166 4.166 21 C -0.178 4.178 22 C -0.147 4.147 23 H 0.044 0.956 24 H 0.019 0.981 25 H 0.060 0.940 26 H 0.267 0.733 27 H 0.332 0.668 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 2.893 17.419 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.078 3.922 3 H 0.043 0.957 4 C -0.621 4.621 5 H 0.080 0.920 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.210 1.210 11 H -0.204 1.204 12 N -0.296 5.296 13 C -0.059 4.059 14 H 0.067 0.933 15 C -0.021 4.021 16 O -0.297 6.297 17 C 0.051 3.949 18 H 0.090 0.910 19 C -0.173 4.173 20 C -0.203 4.203 21 C -0.215 4.215 22 C -0.185 4.185 23 H 0.063 0.937 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.150 0.850 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.825 4.306 16.247 16.828 hybrid contribution -0.676 -1.287 1.165 1.863 sum 0.150 3.019 17.412 17.672 Atomic orbital electron populations 1.22899 1.01102 0.99910 1.00120 1.19570 0.89071 0.94471 0.89134 0.95665 1.21949 1.39619 1.10283 0.90261 0.91961 1.25684 0.95033 1.04874 0.92162 1.70856 1.42221 1.09887 1.31433 0.84059 0.76893 0.75692 0.76071 1.21086 1.20999 1.20377 1.60828 1.57995 1.08341 1.02440 1.22846 0.97143 0.95157 0.90749 0.93276 1.23538 0.96174 1.00921 0.81489 1.89063 1.84195 1.34559 1.21853 1.22293 0.95059 0.86780 0.90752 0.91016 1.22372 1.01340 1.00604 0.92970 1.22867 1.01940 0.93110 1.02377 1.22948 0.94128 1.03924 1.00524 1.23104 0.97836 1.01259 0.96302 0.93664 0.96225 0.92085 0.92256 0.84973 0.90716 0.89672 0.87090 0.87625 0.89373 0.89133 0.88669 0.91011 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 8.85 37.16 0.33 -3.58 16 2 C 0.19 4.36 2.02 -68.86 -0.14 4.22 16 3 H 0.03 0.61 6.46 -51.93 -0.34 0.27 16 4 C -0.58 -16.29 9.11 -34.44 -0.31 -16.61 16 5 H 0.06 1.91 8.06 -52.49 -0.42 1.48 16 6 C 0.03 0.78 5.29 -17.82 -0.09 0.68 16 7 N -0.91 -27.93 13.70 55.43 0.76 -27.17 16 8 Si 1.04 25.12 26.29 -169.99 -4.47 20.65 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.16 5.76 56.52 0.33 -5.83 16 12 N -0.66 -13.38 6.02 -99.31 -0.60 -13.98 16 13 C 0.05 0.89 3.20 -66.14 -0.21 0.68 16 14 H 0.05 0.86 7.26 -51.93 -0.38 0.48 16 15 C 0.06 0.95 7.29 37.93 0.28 1.23 16 16 O -0.38 -5.99 9.78 -35.23 -0.34 -6.33 16 17 C 0.11 1.49 3.65 -25.96 -0.09 1.40 16 18 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 19 C -0.15 -1.76 5.60 -90.62 -0.51 -2.27 16 20 C -0.17 -1.84 9.89 -26.69 -0.26 -2.10 16 21 C -0.18 -1.86 10.25 -26.69 -0.27 -2.13 16 22 C -0.15 -2.04 6.30 -25.16 -0.16 -2.19 16 23 H 0.04 0.94 8.01 -51.93 -0.42 0.53 16 24 H 0.02 0.36 7.56 -51.93 -0.39 -0.03 16 25 H 0.06 1.39 4.88 -51.93 -0.25 1.14 16 26 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 27 H 0.33 6.33 7.78 -39.29 -0.31 6.02 16 28 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 29 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.11 1.10 8.13 -51.93 -0.42 0.68 16 31 H 0.11 1.33 7.06 -51.93 -0.37 0.97 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.91 7.87 -51.92 -0.41 0.50 16 36 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 LS Contribution 285.36 15.07 4.30 4.30 Total: -1.00 -29.56 285.36 -7.66 -37.22 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.86 Total: 6.00 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -1.45 Total: -20.69 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.16 Total: -41.14 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.34 Total: -6.33 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -4.47 Total: 20.65 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.56 -7.66 -37.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700990932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.466 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds