Wall clock time and date at job start Mon Mar 30 2020 03:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46824 * 2 1 4 4 C 1.50706 * 109.47060 * 240.00048 * 2 1 3 5 5 H 1.07996 * 120.00231 * 245.62718 * 4 2 1 6 6 C 1.37883 * 119.99538 * 65.63081 * 4 2 1 7 7 N 1.31517 * 119.99569 * 197.50781 * 6 4 2 8 8 Si 1.86800 * 120.00419 * 17.50585 * 6 4 2 9 9 H 1.48493 * 109.46979 * 179.97438 * 8 6 4 10 10 H 1.48506 * 109.46542 * 60.00165 * 8 6 4 11 11 H 1.48496 * 109.47254 * 300.00561 * 8 6 4 12 12 N 1.46902 * 109.47246 * 120.00278 * 2 1 3 13 13 C 1.46897 * 110.99802 * 275.00313 * 12 2 1 14 14 H 1.09002 * 110.45824 * 34.29585 * 13 12 2 15 15 C 1.54479 * 110.50811 * 271.69068 * 13 12 2 16 16 O 1.44650 * 104.69606 * 217.47399 * 15 13 12 17 17 C 1.44427 * 105.36513 * 40.35140 * 16 15 13 18 18 H 1.09001 * 110.37578 * 78.39352 * 17 16 15 19 19 C 1.53002 * 110.37175 * 200.73293 * 17 16 15 20 20 C 1.53005 * 117.49432 * 4.12731 * 19 17 16 21 21 C 1.52995 * 117.49668 * 295.46849 * 19 17 16 22 22 C 1.54476 * 104.80313 * 319.56236 * 17 16 15 23 23 H 1.09005 * 109.47047 * 186.33167 * 1 2 3 24 24 H 1.08995 * 109.47112 * 306.33281 * 1 2 3 25 25 H 1.09001 * 109.47163 * 66.34002 * 1 2 3 26 26 H 0.97004 * 119.99898 * 354.88704 * 7 6 4 27 27 H 1.00904 * 110.99367 * 38.95102 * 12 2 1 28 28 H 1.09001 * 110.37639 * 336.21289 * 15 13 12 29 29 H 1.09005 * 110.36994 * 98.55108 * 15 13 12 30 30 H 1.09001 * 115.55158 * 149.79313 * 19 17 16 31 31 H 1.08999 * 117.50017 * 359.97438 * 20 19 17 32 32 H 1.08999 * 117.49638 * 145.02591 * 20 19 17 33 33 H 1.09001 * 117.50069 * 214.97978 * 21 19 17 34 34 H 1.09004 * 117.50211 * 0.02562 * 21 19 17 35 35 H 1.09008 * 110.51645 * 265.33692 * 22 17 16 36 36 H 1.09003 * 110.63287 * 142.68501 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5762 -1.6384 -1.1341 6 6 1.7976 -0.1755 -2.4795 7 7 1.9162 -0.9293 -3.5506 8 14 1.3110 1.6200 -2.6502 9 1 1.1180 1.9461 -4.0860 10 1 2.3839 2.4791 -2.0878 11 1 0.0452 1.8621 -1.9124 12 7 2.0197 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2708 0.9485 2.3000 15 6 3.4493 0.9407 2.3922 16 8 3.7706 1.0297 3.7998 17 6 3.3666 -0.2364 4.3653 18 1 4.1078 -1.0045 4.1443 19 6 3.1679 -0.1055 5.8767 20 6 3.3210 1.2873 6.4913 21 6 4.3976 0.2246 6.7249 22 6 2.0259 -0.5679 3.6733 23 1 -0.3633 -1.0214 0.1133 24 1 -0.3633 0.6088 0.8278 25 1 -0.3633 0.4124 -0.9413 26 1 2.2402 -1.8401 -3.4692 27 1 1.4495 -1.4980 1.4099 28 1 4.2037 0.3544 1.8677 29 1 3.3696 1.9362 1.9552 30 1 2.4195 -0.7680 6.3116 31 1 3.5637 2.1102 5.8189 32 1 2.6737 1.5408 7.3308 33 1 4.4583 -0.2206 7.7180 34 1 5.3483 0.3489 6.2062 35 1 1.1876 -0.2309 4.2832 36 1 1.9488 -1.6374 3.4776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700990932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:58 Heat of formation + Delta-G solvation = -42.938657 kcal Electronic energy + Delta-G solvation = -15874.391279 eV Core-core repulsion = 13358.271591 eV Total energy + Delta-G solvation = -2516.119688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.81744 -38.06048 -36.92498 -34.66843 -32.57960 -30.40640 -28.26446 -26.77734 -24.73896 -23.17767 -22.13838 -21.60029 -21.19820 -19.55903 -17.34773 -17.21059 -16.47106 -16.06807 -15.98404 -15.41761 -15.21510 -14.88452 -14.46802 -13.91819 -13.90141 -13.36617 -13.02021 -12.68077 -12.37500 -12.35823 -12.26339 -12.09902 -11.97775 -11.78447 -11.57243 -11.21335 -11.06019 -11.03308 -10.59492 -10.36412 -9.18284 -8.67738 -6.30363 1.44553 1.52744 1.70698 2.49143 2.80617 2.95208 3.09280 3.46738 3.51954 3.72619 3.99944 4.08207 4.15468 4.22815 4.40894 4.48217 4.54583 4.60844 4.67600 4.71565 4.79511 4.83887 4.90413 4.95432 5.02295 5.06199 5.12482 5.26585 5.37794 5.43870 5.78034 5.92456 6.09058 6.40117 6.68391 6.76195 7.47351 8.68017 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053434 B = 0.005934 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.886763 B = 4717.461146 C = 4799.937748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.189 3.811 3 H 0.026 0.974 4 C -0.584 4.584 5 H 0.019 0.981 6 C -0.024 4.024 7 N -0.943 5.943 8 Si 1.082 2.918 9 H -0.290 1.290 10 H -0.267 1.267 11 H -0.242 1.242 12 N -0.676 5.676 13 C 0.052 3.948 14 H 0.054 0.946 15 C 0.057 3.943 16 O -0.383 6.383 17 C 0.103 3.897 18 H 0.065 0.935 19 C -0.159 4.159 20 C -0.168 4.168 21 C -0.173 4.173 22 C -0.137 4.137 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.250 0.750 27 H 0.338 0.662 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.697 4.149 19.918 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.080 3.920 3 H 0.044 0.956 4 C -0.623 4.623 5 H 0.038 0.962 6 C -0.222 4.222 7 N -0.580 5.580 8 Si 0.904 3.096 9 H -0.216 1.216 10 H -0.193 1.193 11 H -0.167 1.167 12 N -0.308 5.308 13 C -0.059 4.059 14 H 0.072 0.928 15 C -0.021 4.021 16 O -0.302 6.302 17 C 0.046 3.954 18 H 0.083 0.917 19 C -0.177 4.177 20 C -0.205 4.205 21 C -0.210 4.210 22 C -0.175 4.175 23 H 0.064 0.936 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.157 0.843 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.102 0.898 35 H 0.110 0.890 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.380 5.543 18.789 19.594 hybrid contribution -0.202 -1.768 0.452 1.836 sum -0.581 3.775 19.241 19.617 Atomic orbital electron populations 1.22737 0.99156 1.00650 1.00796 1.19368 0.90349 0.93832 0.88493 0.95566 1.22179 1.38502 1.08830 0.92761 0.96244 1.27117 0.94764 1.08366 0.91920 1.70993 1.44868 1.09456 1.32658 0.83601 0.78734 0.70921 0.76357 1.21637 1.19268 1.16667 1.60624 1.58196 1.09108 1.02860 1.22881 0.97009 0.95057 0.90928 0.92844 1.23422 0.95757 1.00697 0.82222 1.89074 1.84397 1.35728 1.20988 1.22442 0.94773 0.85730 0.92470 0.91713 1.22413 1.02590 1.01376 0.91293 1.22887 1.02633 0.92363 1.02626 1.23015 0.93287 1.03442 1.01273 1.23064 0.98569 1.01224 0.94637 0.93607 0.92934 0.93269 0.94046 0.84326 0.92842 0.89465 0.84973 0.89563 0.87367 0.86896 0.89839 0.89001 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.06 8.85 71.98 0.64 -6.43 16 2 C 0.19 8.61 2.02 44.17 0.09 8.69 16 3 H 0.03 1.21 6.46 -2.39 -0.02 1.19 16 4 C -0.58 -33.21 9.11 25.60 0.23 -32.98 16 5 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16 6 C -0.02 -1.41 5.29 84.66 0.45 -0.96 16 7 N -0.94 -59.60 13.70 21.45 0.29 -59.31 16 8 Si 1.08 49.68 26.29 68.60 1.80 51.49 16 9 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 10 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.24 -9.75 5.76 99.48 0.57 -9.17 16 12 N -0.68 -26.50 6.02 -468.10 -2.82 -29.32 16 13 C 0.05 1.66 3.20 45.93 0.15 1.80 16 14 H 0.05 1.70 7.26 -2.39 -0.02 1.68 16 15 C 0.06 1.87 7.29 72.48 0.53 2.40 16 16 O -0.38 -11.65 9.78 -148.98 -1.46 -13.11 16 17 C 0.10 2.63 3.65 31.10 0.11 2.74 16 18 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 19 C -0.16 -3.16 5.60 -10.79 -0.06 -3.22 16 20 C -0.17 -3.28 9.89 30.62 0.30 -2.98 16 21 C -0.17 -3.17 10.25 30.62 0.31 -2.86 16 22 C -0.14 -3.43 6.30 31.61 0.20 -3.23 16 23 H 0.04 1.82 8.01 -2.38 -0.02 1.80 16 24 H 0.05 1.78 7.56 -2.39 -0.02 1.76 16 25 H 0.05 2.10 4.88 -2.39 -0.01 2.09 16 26 H 0.25 16.13 8.73 -92.71 -0.81 15.32 16 27 H 0.34 12.45 7.78 -89.69 -0.70 11.75 16 28 H 0.05 1.98 8.06 -2.39 -0.02 1.96 16 29 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 30 H 0.13 2.09 8.13 -2.39 -0.02 2.07 16 31 H 0.09 2.04 7.06 -2.39 -0.02 2.02 16 32 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.09 1.97 7.87 -2.38 -0.02 1.95 16 36 H 0.09 2.09 7.58 -2.39 -0.02 2.07 16 Total: -1.00 -64.73 285.36 0.96 -63.77 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.19 Total: 23.48 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 2.95 Total: -37.00 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -2.53 Total: -88.63 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.46 Total: -13.11 kcal Atomic # 14 Polarization: 49.68 SS G_CDS: 1.80 Total: 51.49 kcal Total: -64.73 0.96 -63.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700990932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.830 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds