Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.53000 * 115.54817 * 325.72813 * 15 13 12 17 17 C 1.53000 * 117.49776 * 111.39270 * 15 13 12 18 18 C 1.52996 * 59.99933 * 107.49202 * 17 15 13 19 19 C 1.52999 * 117.49821 * 252.50723 * 18 17 15 20 20 C 1.53000 * 117.49803 * 107.49022 * 18 17 15 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.08997 * 109.47418 * 34.41422 * 16 15 13 27 27 H 1.09002 * 109.46835 * 154.41567 * 16 15 13 28 28 H 1.08996 * 109.46907 * 274.40775 * 16 15 13 29 29 H 1.09004 * 117.49823 * 214.98512 * 17 15 13 30 30 H 1.09001 * 117.50204 * 359.97438 * 17 15 13 31 31 H 1.09007 * 109.46865 * 128.62070 * 19 18 17 32 32 H 1.08993 * 109.47353 * 248.62230 * 19 18 17 33 33 H 1.08997 * 109.47245 * 8.62577 * 19 18 17 34 34 H 1.08996 * 109.47129 * 351.37828 * 20 18 17 35 35 H 1.09003 * 109.47276 * 111.37543 * 20 18 17 36 36 H 1.09003 * 109.47225 * 231.37501 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 3.6923 -1.8198 -3.3404 17 6 1.6565 -0.9465 -4.7318 18 6 2.7731 0.0896 -4.8746 19 6 2.3784 1.5666 -4.8136 20 6 3.9317 -0.2457 -5.8159 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.2491 -1.6316 -1.1527 26 1 3.4796 -2.3182 -2.3947 27 1 3.6560 -2.5477 -4.1509 28 1 4.6847 -1.3709 -3.2995 29 1 1.7472 -1.8671 -5.3083 30 1 0.6405 -0.5764 -4.5941 31 1 3.0046 2.0802 -4.0840 32 1 2.5167 2.0205 -5.7948 33 1 1.3326 1.6513 -4.5183 34 1 3.8473 -1.2826 -6.1410 35 1 3.8958 0.4115 -6.6848 36 1 4.8775 -0.1048 -5.2926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702130936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = -29.266966 kcal Electronic energy + Delta-G solvation = -16074.384642 eV Core-core repulsion = 13558.857803 eV Total energy + Delta-G solvation = -2515.526839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.91211 -37.09468 -34.66619 -32.47551 -30.55769 -28.53358 -27.89853 -26.67206 -25.23528 -23.05159 -20.72648 -19.39391 -18.51473 -16.56969 -15.65454 -15.24947 -14.46924 -14.34367 -14.04111 -13.65280 -13.26198 -12.92070 -12.64705 -12.36119 -12.05528 -11.94282 -11.73333 -11.65290 -11.50952 -11.06965 -11.00106 -10.93847 -10.68406 -10.28299 -10.21277 -9.71419 -9.43070 -9.02771 -8.66273 -8.50789 -7.82777 -6.10250 -4.19477 3.21823 3.26632 3.31704 3.33146 3.99609 4.14236 4.39464 4.76202 4.89439 5.07424 5.21971 5.24643 5.42011 5.67107 5.71462 5.82240 5.88790 5.95323 5.99549 6.04433 6.20662 6.27796 6.34090 6.43528 6.81909 6.86433 7.00442 7.18449 7.51977 7.61152 7.73100 7.95148 8.17922 8.73930 8.82291 9.21890 9.48610 10.95707 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046016 B = 0.006615 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.336678 B = 4231.759249 C = 4519.775707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.536 3.464 14 O -0.550 6.550 15 C -0.157 4.157 16 C -0.111 4.111 17 C -0.149 4.149 18 C -0.096 4.096 19 C -0.100 4.100 20 C -0.112 4.112 21 H 0.089 0.911 22 H 0.025 0.975 23 H 0.014 0.986 24 H 0.265 0.735 25 H 0.387 0.613 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 -4.963 -12.827 14.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.353 5.353 13 C 0.321 3.679 14 O -0.430 6.430 15 C -0.160 4.160 16 C -0.169 4.169 17 C -0.187 4.187 18 C -0.096 4.096 19 C -0.157 4.157 20 C -0.169 4.169 21 H 0.108 0.892 22 H 0.044 0.956 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.220 0.780 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.422 -3.988 -12.661 13.708 hybrid contribution 0.356 -1.033 1.013 1.490 sum 3.778 -5.020 -11.647 13.234 Atomic orbital electron populations 1.22069 0.98560 0.99025 1.00801 1.18721 0.90957 0.93967 0.80051 0.93427 1.21190 1.32424 1.13189 0.90396 0.92203 1.24887 0.94823 0.94963 0.99026 1.69894 1.35879 1.22437 1.23939 0.86512 0.79160 0.79595 0.81843 1.20193 1.21117 1.20165 1.46514 1.64941 1.13488 1.10390 1.19353 0.78157 0.86758 0.83679 1.90639 1.51707 1.15810 1.84798 1.21749 1.02306 1.01741 0.90235 1.21307 0.97446 0.96148 1.01974 1.23278 0.95337 1.00559 0.99483 1.21575 0.97865 0.94307 0.95883 1.21319 1.02868 0.91678 0.99792 1.21345 0.96711 1.00990 0.97885 0.89207 0.95555 0.96732 0.92545 0.77959 0.91694 0.92127 0.91885 0.88454 0.88593 0.91361 0.93979 0.91662 0.92568 0.92112 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.90 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.71 -15.26 4.97 -54.93 -0.27 -15.53 16 13 C 0.54 11.09 7.34 -10.99 -0.08 11.01 16 14 O -0.55 -13.18 12.77 5.55 0.07 -13.10 16 15 C -0.16 -2.45 2.61 -155.66 -0.41 -2.86 16 16 C -0.11 -1.43 8.82 37.16 0.33 -1.10 16 17 C -0.15 -2.02 9.17 -26.73 -0.25 -2.26 16 18 C -0.10 -1.34 2.70 -154.51 -0.42 -1.76 16 19 C -0.10 -1.55 8.09 37.16 0.30 -1.25 16 20 C -0.11 -1.22 8.88 37.16 0.33 -0.89 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.39 7.39 6.83 -40.82 -0.28 7.12 16 26 H 0.06 0.84 6.38 -51.93 -0.33 0.51 16 27 H 0.06 0.63 7.77 -51.93 -0.40 0.23 16 28 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 29 H 0.10 1.07 7.96 -51.93 -0.41 0.66 16 30 H 0.10 1.40 8.05 -51.93 -0.42 0.98 16 31 H 0.07 1.21 7.26 -51.92 -0.38 0.83 16 32 H 0.04 0.54 7.92 -51.93 -0.41 0.13 16 33 H 0.06 1.13 7.01 -51.93 -0.36 0.77 16 34 H 0.06 0.53 7.77 -51.93 -0.40 0.12 16 35 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 36 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -29.96 290.29 -6.38 -36.35 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.74 Total: 5.43 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.42 Total: -8.74 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.35 Total: -40.12 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.96 -6.38 -36.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702130936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.078 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds