Wall clock time and date at job start Mon Mar 30 2020 03:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46954 * 59.99790 * 8 6 4 10 10 H 1.48496 * 109.46873 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47158 * 300.00368 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21287 * 119.99681 * 0.02562 * 13 12 2 15 15 C 1.50696 * 120.00198 * 180.02562 * 13 12 2 16 16 C 1.53000 * 115.54817 * 325.72813 * 15 13 12 17 17 C 1.53000 * 117.49776 * 111.39270 * 15 13 12 18 18 C 1.52996 * 59.99933 * 107.49202 * 17 15 13 19 19 C 1.52999 * 117.49821 * 252.50723 * 18 17 15 20 20 C 1.53000 * 117.49803 * 107.49022 * 18 17 15 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.08997 * 109.47418 * 34.41422 * 16 15 13 27 27 H 1.09002 * 109.46835 * 154.41567 * 16 15 13 28 28 H 1.08996 * 109.46907 * 274.40775 * 16 15 13 29 29 H 1.09004 * 117.49823 * 214.98512 * 17 15 13 30 30 H 1.09001 * 117.50204 * 359.97438 * 17 15 13 31 31 H 1.09007 * 109.46865 * 128.62070 * 19 18 17 32 32 H 1.08993 * 109.47353 * 248.62230 * 19 18 17 33 33 H 1.08997 * 109.47245 * 8.62577 * 19 18 17 34 34 H 1.08996 * 109.47129 * 351.37828 * 20 18 17 35 35 H 1.09003 * 109.47276 * 111.37543 * 20 18 17 36 36 H 1.09003 * 109.47225 * 231.37501 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.8065 -1.1210 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5204 4.0076 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8589 1.1587 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 3.6923 -1.8198 -3.3404 17 6 1.6565 -0.9465 -4.7318 18 6 2.7731 0.0896 -4.8746 19 6 2.3784 1.5666 -4.8136 20 6 3.9317 -0.2457 -5.8159 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.2491 -1.6316 -1.1527 26 1 3.4796 -2.3182 -2.3947 27 1 3.6560 -2.5477 -4.1509 28 1 4.6847 -1.3709 -3.2995 29 1 1.7472 -1.8671 -5.3083 30 1 0.6405 -0.5764 -4.5941 31 1 3.0046 2.0802 -4.0840 32 1 2.5167 2.0205 -5.7948 33 1 1.3326 1.6513 -4.5183 34 1 3.8473 -1.2826 -6.1410 35 1 3.8958 0.4115 -6.6848 36 1 4.8775 -0.1048 -5.2926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702130936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:21 Heat of formation + Delta-G solvation = -48.143354 kcal Electronic energy + Delta-G solvation = -16075.203183 eV Core-core repulsion = 13558.857803 eV Total energy + Delta-G solvation = -2516.345381 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.34262 -38.59173 -36.59054 -34.41055 -31.97307 -30.28811 -28.84140 -27.81483 -27.36696 -24.62547 -22.41464 -20.95319 -20.02018 -18.30798 -17.27614 -17.13732 -16.13966 -15.84004 -15.29754 -15.06243 -14.61700 -14.40720 -14.20073 -13.77872 -13.63411 -13.10937 -13.06494 -13.00976 -12.86199 -12.77454 -12.69190 -12.60542 -12.28197 -12.16313 -12.03909 -11.14303 -10.89320 -10.66001 -10.56891 -10.20327 -9.70592 -8.18917 -6.37120 1.43535 1.46140 1.54055 1.71788 2.34223 2.59465 2.84047 3.11072 3.62967 3.82252 3.86919 4.11237 4.23438 4.61886 4.72005 4.81202 4.82516 4.85289 4.88853 4.94428 4.99387 5.06895 5.08499 5.12437 5.16864 5.28580 5.37857 5.41678 5.57469 5.63588 5.68343 5.90421 6.08369 6.70727 7.00172 7.31012 7.59259 8.87328 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.046016 B = 0.006615 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.336678 B = 4231.759249 C = 4519.775707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.263 1.263 12 N -0.703 5.703 13 C 0.525 3.475 14 O -0.592 6.592 15 C -0.172 4.172 16 C -0.106 4.106 17 C -0.132 4.132 18 C -0.095 4.095 19 C -0.098 4.098 20 C -0.107 4.107 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.009 0.991 24 H 0.266 0.734 25 H 0.402 0.598 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.137 0.863 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -7.538 -14.122 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.352 5.352 13 C 0.313 3.687 14 O -0.474 6.474 15 C -0.176 4.176 16 C -0.163 4.163 17 C -0.169 4.169 18 C -0.096 4.096 19 C -0.155 4.155 20 C -0.163 4.163 21 H 0.085 0.915 22 H 0.058 0.942 23 H 0.028 0.972 24 H 0.075 0.925 25 H 0.237 0.763 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.639 -6.597 -13.984 16.143 hybrid contribution -0.057 -0.131 1.374 1.382 sum 4.581 -6.728 -12.609 15.008 Atomic orbital electron populations 1.21881 0.98413 0.99313 0.99401 1.18319 0.91038 0.91809 0.82082 0.98665 1.21513 1.32723 1.13604 0.90848 0.90964 1.25838 0.94811 0.95581 1.02406 1.70051 1.36966 1.23940 1.24711 0.85364 0.78646 0.78721 0.77401 1.19543 1.21063 1.18746 1.46297 1.65195 1.14066 1.09686 1.20354 0.77011 0.86508 0.84814 1.90624 1.53250 1.17935 1.85615 1.21719 1.04464 1.03213 0.88165 1.21333 0.96248 0.95641 1.03090 1.23405 0.94022 1.01740 0.97736 1.21760 0.99495 0.93025 0.95313 1.21236 1.00427 0.93524 1.00285 1.21367 0.94840 1.02842 0.97300 0.91465 0.94190 0.97190 0.92505 0.76269 0.92227 0.88642 0.91761 0.84508 0.90339 0.94411 0.91129 0.94460 0.90098 0.90772 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.64 2.56 44.24 0.11 14.75 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.84 8.73 25.60 0.22 -29.61 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.75 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.97 42.49 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 N -0.70 -30.92 4.97 -446.09 -2.22 -33.14 16 13 C 0.53 22.24 7.34 87.66 0.64 22.89 16 14 O -0.59 -29.97 12.77 -3.05 -0.04 -30.01 16 15 C -0.17 -5.12 2.61 -52.93 -0.14 -5.26 16 16 C -0.11 -2.38 8.82 71.98 0.63 -1.75 16 17 C -0.13 -3.22 9.17 30.59 0.28 -2.94 16 18 C -0.10 -2.48 2.70 -52.18 -0.14 -2.62 16 19 C -0.10 -3.06 8.09 71.98 0.58 -2.48 16 20 C -0.11 -1.89 8.88 71.98 0.64 -1.26 16 21 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 24 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 25 H 0.40 15.13 6.83 -92.71 -0.63 14.50 16 26 H 0.06 1.39 6.38 -2.39 -0.02 1.38 16 27 H 0.09 1.50 7.77 -2.39 -0.02 1.48 16 28 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 29 H 0.14 2.29 7.96 -2.38 -0.02 2.27 16 30 H 0.08 2.21 8.05 -2.39 -0.02 2.19 16 31 H 0.04 1.39 7.26 -2.38 -0.02 1.37 16 32 H 0.07 1.74 7.92 -2.39 -0.02 1.72 16 33 H 0.04 1.34 7.01 -2.39 -0.02 1.32 16 34 H 0.08 1.07 7.77 -2.39 -0.02 1.05 16 35 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 36 H 0.06 1.10 8.03 -2.39 -0.02 1.08 16 Total: -1.00 -68.02 290.29 4.39 -63.63 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.42 Total: 21.84 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.95 Total: -13.34 kcal Atomic # 7 Polarization: -84.66 SS G_CDS: -1.97 Total: -86.64 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.04 Total: -30.01 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -68.02 4.39 -63.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702130936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.489 kcal (2) G-P(sol) polarization free energy of solvation -68.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds