Wall clock time and date at job start Mon Mar 30 2020 02:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47193 * 2 1 4 4 C 1.52992 * 109.47428 * 239.99427 * 2 1 3 5 5 C 1.50702 * 109.47783 * 175.00048 * 4 2 1 6 6 H 1.08000 * 119.99309 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00185 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00439 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47502 * 59.99534 * 9 7 5 11 11 H 1.48503 * 109.47213 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47138 * 299.99583 * 9 7 5 13 13 N 1.46905 * 109.47418 * 119.99356 * 2 1 3 14 14 C 1.47635 * 110.99575 * 33.51449 * 13 2 1 15 15 C 1.52689 * 87.72540 * 221.91927 * 14 13 2 16 16 C 1.47641 * 110.99796 * 297.34480 * 13 2 1 17 17 C 1.53326 * 115.50197 * 269.84579 * 15 14 13 18 18 C 1.55023 * 103.79414 * 229.76712 * 17 15 14 19 19 C 1.55059 * 102.13247 * 20.85188 * 18 17 15 20 20 O 1.42851 * 115.88569 * 141.64882 * 15 14 13 21 21 H 1.09000 * 109.47169 * 169.77900 * 1 2 3 22 22 H 1.09001 * 109.47517 * 49.77946 * 1 2 3 23 23 H 1.09000 * 109.47233 * 289.78288 * 1 2 3 24 24 H 1.09001 * 109.47550 * 295.00052 * 4 2 1 25 25 H 1.09006 * 109.47352 * 54.99557 * 4 2 1 26 26 H 0.96998 * 120.00161 * 180.02562 * 8 7 5 27 27 H 1.08998 * 113.51124 * 336.63929 * 14 13 2 28 28 H 1.08997 * 113.50568 * 107.21152 * 14 13 2 29 29 H 1.08995 * 113.50846 * 252.79675 * 16 13 2 30 30 H 1.08998 * 113.50599 * 23.36446 * 16 13 2 31 31 H 1.09003 * 110.56174 * 348.34154 * 17 15 14 32 32 H 1.09000 * 110.56949 * 111.03893 * 17 15 14 33 33 H 1.09005 * 110.87088 * 139.01251 * 18 17 15 34 34 H 1.09000 * 110.86684 * 262.48432 * 18 17 15 35 35 H 1.08997 * 110.58661 * 82.01643 * 19 18 17 36 36 H 1.09000 * 110.58656 * 204.93260 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0855 -0.5396 7 6 4.2303 -1.1929 -2.3582 8 7 3.5764 -1.8372 -3.2998 9 14 6.0921 -1.0617 -2.4364 10 1 6.6838 -1.6885 -1.2273 11 1 6.5871 -1.7617 -3.6489 12 1 6.4854 0.3691 -2.4951 13 7 2.0197 -0.6924 1.1995 14 6 1.1126 -1.7923 1.5828 15 6 1.2923 -1.3534 3.0342 16 6 1.5991 0.0132 2.4264 17 6 2.4519 -2.0176 3.7859 18 6 1.8036 -2.5091 5.1056 19 6 0.3002 -2.5624 4.7300 20 8 0.1259 -1.4237 3.8560 21 1 -0.3633 -1.0114 -0.1824 22 1 -0.3634 0.6636 -0.7847 23 1 -0.3634 0.3478 0.9670 24 1 1.7517 -1.7716 -1.2054 25 1 1.6053 -0.2620 -2.1369 26 1 4.0607 -2.2441 -4.0351 27 1 0.0951 -1.6657 1.2130 28 1 1.5178 -2.7825 1.3747 29 1 2.4127 0.5386 2.9263 30 1 0.7154 0.6360 2.2884 31 1 2.8454 -2.8594 3.2161 32 1 3.2404 -1.2934 3.9906 33 1 2.1722 -3.4992 5.3741 34 1 1.9805 -1.7987 5.9131 35 1 0.0693 -3.4885 4.2035 36 1 -0.3210 -2.4611 5.6199 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702917794.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:43 Heat of formation + Delta-G solvation = -27.323643 kcal Electronic energy + Delta-G solvation = -16236.298334 eV Core-core repulsion = 13720.855764 eV Total energy + Delta-G solvation = -2515.442570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.14392 -39.01442 -35.53586 -33.72661 -32.86879 -29.46491 -28.77625 -27.17491 -25.93678 -24.52334 -22.66163 -21.20468 -19.70944 -18.43128 -17.73294 -17.21795 -16.71660 -16.46977 -15.80537 -15.16055 -14.82910 -14.51105 -14.30460 -14.08613 -13.85072 -13.31360 -13.14594 -12.69737 -12.65808 -12.56019 -12.40280 -12.22250 -12.04746 -11.92900 -11.53069 -11.42128 -11.19249 -11.07787 -10.51171 -10.46780 -9.55641 -8.12521 -6.18655 1.40464 1.43884 1.51434 2.45769 2.76954 3.18178 3.25730 3.42114 3.73984 3.80019 4.05916 4.13624 4.17191 4.33689 4.37406 4.42924 4.52066 4.68471 4.73894 4.82365 4.85383 4.88636 4.91724 5.01628 5.10041 5.12535 5.20010 5.24854 5.37583 5.55812 5.72849 5.87973 6.02462 6.22772 6.42879 6.94484 7.47450 8.99656 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034759 B = 0.007232 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.356427 B = 3870.928564 C = 4322.827117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.059 3.941 3 H 0.067 0.933 4 C 0.043 3.957 5 C -0.507 4.507 6 H 0.057 0.943 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.459 5.459 14 C -0.026 4.026 15 C 0.086 3.914 16 C 0.001 3.999 17 C -0.122 4.122 18 C -0.145 4.145 19 C 0.038 3.962 20 O -0.379 6.379 21 H 0.054 0.946 22 H 0.064 0.936 23 H 0.070 0.930 24 H -0.012 1.012 25 H -0.006 1.006 26 H 0.260 0.740 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -0.203 16.792 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.049 4.049 3 H 0.085 0.915 4 C 0.006 3.994 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.202 4.202 8 N -0.582 5.582 9 Si 0.786 3.214 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.193 1.193 13 N -0.182 5.182 14 C -0.155 4.155 15 C 0.045 3.955 16 C -0.128 4.128 17 C -0.160 4.160 18 C -0.183 4.183 19 C -0.038 4.038 20 O -0.297 6.297 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.006 0.994 25 H 0.012 0.988 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.081 0.919 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.765 -0.259 16.464 17.142 hybrid contribution 0.151 -0.069 -0.769 0.787 sum -4.613 -0.328 15.695 16.363 Atomic orbital electron populations 1.22423 0.96506 1.01848 1.02344 1.22061 0.92811 0.97823 0.92244 0.91458 1.18898 0.95373 0.93810 0.91336 1.21462 0.93204 1.32888 1.06931 0.92446 1.25903 1.03286 0.95427 0.95567 1.70090 1.37359 1.37778 1.13015 0.85574 0.80061 0.78501 0.77304 1.19624 1.21095 1.19325 1.69166 1.42275 1.06160 1.00626 1.24539 0.98024 0.97519 0.95448 1.22903 0.86551 0.96559 0.89456 1.24090 1.00626 0.96040 0.92013 1.22495 0.96649 1.00834 0.96021 1.23184 0.94786 1.03408 0.96895 1.23831 0.97062 0.88838 0.94060 1.88732 1.39862 1.49342 1.51801 0.92724 0.91722 0.91095 0.99395 0.98793 0.93146 0.89550 0.91498 0.88849 0.90260 0.90898 0.89828 0.88418 0.89441 0.91915 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.05 7.72 71.98 0.56 -5.49 16 2 C 0.06 2.53 2.36 44.91 0.11 2.64 16 3 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 4 C 0.04 2.34 4.57 29.85 0.14 2.47 16 5 C -0.51 -29.64 8.84 25.60 0.23 -29.42 16 6 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -58.88 13.29 21.44 0.28 -58.59 16 9 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.46 -18.17 6.02 -903.38 -5.44 -23.60 16 14 C -0.03 -0.93 6.77 83.76 0.57 -0.36 16 15 C 0.09 2.52 1.65 -10.89 -0.02 2.50 16 16 C 0.00 0.03 7.05 83.76 0.59 0.62 16 17 C -0.12 -3.07 6.45 31.40 0.20 -2.87 16 18 C -0.15 -2.60 7.17 31.99 0.23 -2.37 16 19 C 0.04 0.74 7.73 72.69 0.56 1.31 16 20 O -0.38 -10.44 11.32 -148.98 -1.69 -12.12 16 21 H 0.05 1.95 6.51 -2.39 -0.02 1.93 16 22 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 23 H 0.07 2.16 5.85 -2.39 -0.01 2.15 16 24 H -0.01 -0.73 8.05 -2.39 -0.02 -0.75 16 25 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.09 3.01 4.84 -2.39 -0.01 3.00 16 28 H 0.07 2.51 7.91 -2.39 -0.02 2.49 16 29 H 0.09 2.73 7.91 -2.39 -0.02 2.71 16 30 H 0.08 2.39 5.99 -2.39 -0.01 2.37 16 31 H 0.07 1.97 7.79 -2.39 -0.02 1.95 16 32 H 0.08 2.06 7.81 -2.39 -0.02 2.04 16 33 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.21 282.94 -0.15 -67.36 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.04 Total: 9.72 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 3.62 Total: -30.85 kcal Atomic # 7 Polarization: -77.04 SS G_CDS: -5.15 Total: -82.19 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -1.69 Total: -12.12 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.21 -0.15 -67.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702917794.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.036 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds