Wall clock time and date at job start Mon Mar 30 2020 03:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00016 * 2 1 4 4 C 1.50699 * 109.46947 * 293.95417 * 3 2 1 5 5 H 1.07997 * 119.99979 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99765 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99705 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00121 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46960 * 59.99723 * 8 6 4 10 10 H 1.48495 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47269 * 300.00200 * 8 6 4 12 12 C 1.46905 * 111.00199 * 123.95755 * 2 1 3 13 13 C 1.50697 * 109.46660 * 296.04599 * 12 2 1 14 14 O 1.20767 * 119.99873 * 239.99993 * 13 12 2 15 15 C 1.52997 * 109.47252 * 176.04382 * 12 2 1 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 12 2 17 17 C 1.53006 * 109.46626 * 60.00378 * 16 15 12 18 18 C 1.52997 * 109.47127 * 299.99539 * 17 16 15 19 19 C 1.52996 * 109.46983 * 56.04376 * 12 2 1 20 20 H 1.08998 * 109.46912 * 296.04574 * 1 2 3 21 21 H 1.09007 * 109.47166 * 56.04317 * 1 2 3 22 22 H 1.08998 * 109.47565 * 176.04465 * 1 2 3 23 23 H 1.08994 * 109.46788 * 53.95662 * 3 2 1 24 24 H 1.09004 * 109.46957 * 173.95644 * 3 2 1 25 25 H 0.96997 * 119.99927 * 180.02562 * 7 6 4 26 26 H 1.08000 * 120.00516 * 59.99462 * 13 12 2 27 27 H 1.09002 * 109.47153 * 59.99950 * 15 12 2 28 28 H 1.08993 * 109.47194 * 300.00238 * 15 12 2 29 29 H 1.08993 * 109.47839 * 300.00447 * 16 15 12 30 30 H 1.09000 * 109.47160 * 180.02562 * 16 15 12 31 31 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 32 32 H 1.09001 * 109.46998 * 179.97438 * 17 16 15 33 33 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 34 34 H 1.08996 * 109.46952 * 300.00302 * 18 17 16 35 35 H 1.08996 * 109.47452 * 60.00080 * 19 12 2 36 36 H 1.09000 * 109.47054 * 300.00240 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0746 1.5112 -2.0488 6 6 2.0277 3.3492 -1.5289 7 7 2.7137 4.0012 -0.6157 8 14 1.5839 4.1865 -3.1386 9 1 0.1067 4.2237 -3.2864 10 1 2.1160 5.5729 -3.1385 11 1 2.1756 3.4287 -4.2703 12 6 1.9955 -0.7661 1.1376 13 6 1.5930 -0.0940 2.4249 14 8 2.4397 0.2964 3.1926 15 6 3.5217 -0.8265 1.0491 16 6 4.0700 -1.6238 2.2342 17 6 3.5006 -3.0436 2.2008 18 6 1.9744 -2.9831 2.2892 19 6 1.4261 -2.1857 1.1036 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5741 -0.8525 22 1 -0.3634 -1.0252 -0.0709 23 1 1.5611 1.9273 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.9883 4.9173 -0.7777 26 1 0.5476 0.0386 2.6611 27 1 3.9274 0.1849 1.0733 28 1 3.8127 -1.3125 0.1179 29 1 3.7790 -1.1375 3.1652 30 1 5.1574 -1.6665 2.1715 31 1 3.7917 -3.5299 1.2697 32 1 3.8916 -3.6118 3.0448 33 1 1.5687 -3.9946 2.2659 34 1 1.6834 -2.4968 3.2202 35 1 1.7170 -2.6718 0.1725 36 1 0.3387 -2.1427 1.1666 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709393980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:43 Heat of formation + Delta-G solvation = -57.123325 kcal Electronic energy + Delta-G solvation = -16622.116632 eV Core-core repulsion = 14105.381851 eV Total energy + Delta-G solvation = -2516.734781 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75913 -38.48651 -36.96429 -34.66137 -31.97599 -30.97154 -29.01721 -26.61307 -25.48764 -23.81412 -23.11875 -21.45724 -19.89780 -18.68638 -17.45786 -16.85773 -16.65271 -16.27461 -15.69706 -15.29520 -14.71674 -14.62597 -14.43664 -14.29373 -13.79759 -13.37141 -13.18508 -13.07381 -12.88755 -12.64250 -12.49350 -12.17357 -12.01845 -11.92234 -11.74756 -11.35334 -11.17217 -10.85617 -10.67328 -10.53566 -8.93231 -8.21701 -6.33023 0.91564 1.40492 1.44104 1.52000 2.38898 3.06909 3.10941 3.32782 3.66461 3.86032 4.13615 4.22904 4.30669 4.42826 4.55593 4.59073 4.62302 4.71065 4.77068 4.92315 5.04039 5.10000 5.12897 5.21161 5.24140 5.28468 5.32424 5.38486 5.41749 5.55552 5.64586 6.01633 6.21319 6.40639 6.57144 6.84111 7.36983 8.89200 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041922 B = 0.007723 C = 0.007384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.748813 B = 3624.573423 C = 3790.963812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.520 5.520 3 C 0.204 3.796 4 C -0.524 4.524 5 H 0.070 0.930 6 C -0.002 4.002 7 N -0.938 5.938 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.287 1.287 11 H -0.267 1.267 12 C 0.050 3.950 13 C 0.322 3.678 14 O -0.484 6.484 15 C -0.095 4.095 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.095 4.095 20 H 0.018 0.982 21 H 0.061 0.939 22 H 0.098 0.902 23 H -0.046 1.046 24 H 0.006 0.994 25 H 0.263 0.737 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.050 -14.549 3.698 15.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.245 5.245 3 C 0.078 3.922 4 C -0.562 4.562 5 H 0.089 0.911 6 C -0.200 4.200 7 N -0.578 5.578 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.192 1.192 12 C -0.041 4.041 13 C 0.178 3.822 14 O -0.355 6.355 15 C -0.133 4.133 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.156 4.156 19 C -0.133 4.133 20 H 0.036 0.964 21 H 0.080 0.920 22 H 0.117 0.883 23 H -0.028 1.028 24 H 0.024 0.976 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.045 0.955 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.351 -14.399 3.721 15.245 hybrid contribution -0.115 1.730 0.075 1.735 sum -3.466 -12.670 3.796 13.673 Atomic orbital electron populations 1.22476 0.86747 1.02735 1.00417 1.62379 1.08870 1.14990 1.38265 1.19456 0.94161 0.83708 0.94871 1.21464 1.34964 0.97451 1.02318 0.91141 1.25993 0.94962 0.98224 1.00800 1.70120 1.39321 1.11901 1.36471 0.85387 0.78996 0.76982 0.78972 1.18818 1.21222 1.19185 1.22108 0.96884 0.96844 0.88220 1.27261 0.95004 0.73188 0.86745 1.90262 1.56437 1.38635 1.50124 1.21383 0.93226 0.99192 0.99449 1.21733 1.00073 0.96664 0.97997 1.21541 0.95670 0.95114 1.02773 1.21608 0.95717 1.01281 0.96969 1.21603 1.01047 0.90151 1.00480 0.96390 0.92001 0.88326 1.02838 0.97560 0.92791 0.88012 0.95549 0.91151 0.92055 0.91966 0.90967 0.90665 0.88459 0.93202 0.89612 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 8.68 127.69 1.11 1.92 16 2 N -0.52 -21.39 4.57 -881.41 -4.03 -25.42 16 3 C 0.20 10.95 4.03 85.56 0.34 11.30 16 4 C -0.52 -29.61 8.46 25.60 0.22 -29.39 16 5 H 0.07 3.81 7.12 -2.91 -0.02 3.79 16 6 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 7 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 8 Si 0.97 44.43 29.54 68.60 2.03 46.46 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.05 1.73 0.44 2.78 0.00 1.73 16 13 C 0.32 11.66 6.99 71.23 0.50 12.15 16 14 O -0.48 -20.51 14.48 -1.47 -0.02 -20.53 16 15 C -0.09 -3.52 4.17 30.59 0.13 -3.39 16 16 C -0.13 -3.86 5.63 30.60 0.17 -3.69 16 17 C -0.11 -2.52 5.92 30.60 0.18 -2.34 16 18 C -0.12 -2.40 5.70 30.61 0.17 -2.22 16 19 C -0.10 -2.29 4.36 30.61 0.13 -2.16 16 20 H 0.02 0.58 6.63 -2.39 -0.02 0.57 16 21 H 0.06 2.34 6.76 -2.38 -0.02 2.32 16 22 H 0.10 2.51 6.24 -2.39 -0.01 2.49 16 23 H -0.05 -2.72 7.45 -2.39 -0.02 -2.74 16 24 H 0.01 0.38 5.83 -2.38 -0.01 0.37 16 25 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.10 3.12 7.06 -2.91 -0.02 3.10 16 27 H 0.03 1.20 6.16 -2.39 -0.01 1.19 16 28 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.06 2.11 5.52 -2.39 -0.01 2.10 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 34 H 0.05 1.09 7.22 -2.39 -0.02 1.07 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.77 6.35 -2.39 -0.02 1.76 16 Total: -1.00 -68.51 272.51 2.73 -65.77 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.05 Total: 7.25 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.42 Total: -15.75 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -3.74 Total: -83.20 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.02 Total: -20.53 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.51 2.73 -65.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709393980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.651 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds