Wall clock time and date at job start Mon Mar 30 2020 03:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47208 * 2 1 4 4 C 1.50705 * 109.47185 * 240.00073 * 2 1 3 5 5 H 1.08000 * 119.99478 * 245.58091 * 4 2 1 6 6 C 1.37874 * 119.99939 * 65.58135 * 4 2 1 7 7 N 1.31511 * 119.99904 * 198.54807 * 6 4 2 8 8 Si 1.86803 * 120.00123 * 18.55127 * 6 4 2 9 9 H 1.48497 * 109.46766 * 179.97438 * 8 6 4 10 10 H 1.48498 * 109.46765 * 299.99663 * 8 6 4 11 11 H 1.48498 * 109.47053 * 59.99480 * 8 6 4 12 12 N 1.46896 * 109.46992 * 120.00078 * 2 1 3 13 13 C 1.47014 * 111.00218 * 58.63610 * 12 2 1 14 14 C 1.53096 * 109.25717 * 177.60771 * 13 12 2 15 15 O 1.43013 * 109.26304 * 56.84643 * 14 13 12 16 16 C 1.43012 * 113.73856 * 301.33556 * 15 14 13 17 17 H 1.09003 * 109.53941 * 298.70673 * 16 15 14 18 18 C 1.53007 * 109.50773 * 178.60104 * 16 15 14 19 19 C 1.53005 * 117.49777 * 128.83307 * 18 16 15 20 20 C 1.52999 * 59.99912 * 252.51334 * 19 18 16 21 21 C 1.47017 * 111.00149 * 294.99837 * 12 2 1 22 22 H 1.08998 * 109.47315 * 294.98067 * 1 2 3 23 23 H 1.09001 * 109.46632 * 54.98129 * 1 2 3 24 24 H 1.09003 * 109.46856 * 174.98001 * 1 2 3 25 25 H 0.97005 * 120.00205 * 354.96371 * 7 6 4 26 26 H 1.08999 * 109.50433 * 297.54402 * 13 12 2 27 27 H 1.08996 * 109.50277 * 57.67285 * 13 12 2 28 28 H 1.09001 * 109.50810 * 296.91018 * 14 13 12 29 29 H 1.09006 * 109.50780 * 176.78151 * 14 13 12 30 30 H 1.08992 * 115.55009 * 274.54319 * 18 16 15 31 31 H 1.08995 * 117.50025 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49297 * 145.02252 * 19 18 16 33 33 H 1.09005 * 117.49996 * 252.51231 * 20 19 18 34 34 H 1.08998 * 117.50079 * 107.49241 * 20 19 18 35 35 H 1.08998 * 109.50764 * 302.33041 * 21 12 2 36 36 H 1.08996 * 109.50382 * 62.45691 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5769 -1.6381 -1.1339 6 6 1.7968 -0.1761 -2.4795 7 7 1.8956 -0.9353 -3.5488 8 14 1.3374 1.6263 -2.6528 9 1 1.1389 1.9505 -4.0883 10 1 0.0810 1.8908 -1.9067 11 1 2.4277 2.4702 -2.1013 12 7 2.0196 -0.6925 1.1994 13 6 1.5218 -2.0749 1.2498 14 6 2.1027 -2.7761 2.4805 15 8 1.7582 -2.0335 3.6532 16 6 2.2280 -0.6828 3.6379 17 1 3.3165 -0.6761 3.5815 18 6 1.7782 0.0290 4.9154 19 6 2.8458 0.7661 5.7267 20 6 2.2570 -0.5455 6.2502 21 6 1.6484 0.0397 2.4190 22 1 -0.3634 0.4340 0.9315 23 1 -0.3633 0.5897 -0.8417 24 1 -0.3633 -1.0238 -0.0899 25 1 2.2047 -1.8510 -3.4666 26 1 0.4337 -2.0677 1.3147 27 1 1.8299 -2.6057 0.3491 28 1 3.1875 -2.8310 2.3900 29 1 1.6916 -3.7831 2.5536 30 1 0.7795 0.4645 4.8842 31 1 3.8684 0.7442 5.3501 32 1 2.5494 1.6868 6.2293 33 1 1.5733 -0.4877 7.0972 34 1 2.8924 -1.4306 6.2182 35 1 2.0489 1.0524 2.3717 36 1 0.5624 0.0807 2.5025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709864411.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:42 Heat of formation + Delta-G solvation = -34.268153 kcal Electronic energy + Delta-G solvation = -16306.116885 eV Core-core repulsion = 13790.373179 eV Total energy + Delta-G solvation = -2515.743707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89950 -38.25232 -37.09934 -34.67536 -31.95399 -31.69842 -27.62620 -26.89570 -25.14744 -23.15975 -22.98090 -21.43366 -20.79070 -19.39194 -17.60513 -17.15062 -16.54972 -16.14035 -15.97747 -15.61138 -15.22133 -14.99819 -14.69513 -14.02346 -13.81973 -13.40860 -13.19626 -12.97387 -12.53149 -12.35964 -12.20967 -12.15801 -11.83216 -11.66149 -11.54933 -11.26972 -11.06048 -10.98450 -10.56838 -10.30001 -9.08890 -8.74427 -6.32985 1.44079 1.52637 1.70796 2.47903 2.49272 3.03234 3.08058 3.23099 3.69784 3.94364 4.02669 4.10856 4.21328 4.23298 4.25479 4.33738 4.49490 4.54887 4.62661 4.64228 4.73118 4.81643 4.89716 4.92120 4.95499 5.06399 5.13934 5.27441 5.30149 5.42771 5.75456 6.03867 6.15983 6.20443 6.48363 6.69240 7.43135 8.65276 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041648 B = 0.007440 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.133341 B = 3762.645753 C = 4163.148630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.187 3.813 3 H 0.035 0.965 4 C -0.588 4.588 5 H 0.025 0.975 6 C -0.020 4.020 7 N -0.938 5.938 8 Si 1.082 2.918 9 H -0.290 1.290 10 H -0.244 1.244 11 H -0.265 1.265 12 N -0.538 5.538 13 C 0.031 3.969 14 C 0.071 3.929 15 O -0.389 6.389 16 C 0.128 3.872 17 H 0.058 0.942 18 C -0.166 4.166 19 C -0.159 4.159 20 C -0.161 4.161 21 C 0.024 3.976 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.036 0.964 25 H 0.251 0.749 26 H 0.029 0.971 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 3.308 17.848 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.079 3.921 3 H 0.053 0.947 4 C -0.626 4.626 5 H 0.044 0.956 6 C -0.218 4.218 7 N -0.574 5.574 8 Si 0.904 3.096 9 H -0.216 1.216 10 H -0.169 1.169 11 H -0.190 1.190 12 N -0.262 5.262 13 C -0.098 4.098 14 C -0.006 4.006 15 O -0.308 6.308 16 C 0.070 3.930 17 H 0.075 0.925 18 C -0.185 4.185 19 C -0.195 4.195 20 C -0.198 4.198 21 C -0.104 4.104 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.133 0.867 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.961 4.344 16.881 17.458 hybrid contribution -0.125 -1.641 0.121 1.650 sum -1.085 2.704 17.002 17.250 Atomic orbital electron populations 1.22703 0.99847 1.00587 1.00520 1.19483 0.90200 0.94331 0.88088 0.94725 1.22099 1.39003 1.08993 0.92480 0.95636 1.27090 0.94374 1.08516 0.91841 1.71002 1.44759 1.08931 1.32748 0.83609 0.78749 0.70953 0.76316 1.21583 1.16918 1.18975 1.62370 1.59428 1.02177 1.02185 1.22569 0.97215 0.90961 0.99024 1.22694 0.99420 0.95275 0.83164 1.87913 1.79017 1.23873 1.40047 1.21662 0.96989 0.81441 0.92901 0.92453 1.22125 1.00406 1.04873 0.91069 1.23104 0.97612 0.96752 1.02081 1.22884 1.03648 0.97359 0.95954 1.22818 0.98644 0.98703 0.90277 0.93029 0.92704 0.94498 0.93994 0.95264 0.91912 0.92905 0.86707 0.87120 0.88582 0.86522 0.87252 0.89200 0.89657 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.69 8.12 71.98 0.58 -7.10 16 2 C 0.19 8.84 1.93 44.17 0.09 8.93 16 3 H 0.03 1.63 6.76 -2.39 -0.02 1.62 16 4 C -0.59 -33.37 8.29 25.60 0.21 -33.16 16 5 H 0.03 1.60 6.81 -2.91 -0.02 1.58 16 6 C -0.02 -1.16 5.34 84.65 0.45 -0.71 16 7 N -0.94 -58.83 13.70 21.45 0.29 -58.54 16 8 Si 1.08 49.61 26.45 68.60 1.81 51.42 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.24 -9.93 5.54 99.48 0.55 -9.38 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 12 N -0.54 -22.69 4.71 -874.39 -4.12 -26.81 16 13 C 0.03 1.24 4.91 86.31 0.42 1.66 16 14 C 0.07 2.31 7.01 72.01 0.50 2.82 16 15 O -0.39 -12.59 10.38 -148.98 -1.55 -14.14 16 16 C 0.13 3.82 3.00 30.63 0.09 3.91 16 17 H 0.06 1.77 7.90 -2.39 -0.02 1.75 16 18 C -0.17 -3.87 5.40 -10.79 -0.06 -3.92 16 19 C -0.16 -2.86 10.18 30.60 0.31 -2.55 16 20 C -0.16 -3.13 10.16 30.59 0.31 -2.81 16 21 C 0.02 0.82 4.58 86.31 0.40 1.21 16 22 H 0.05 1.93 6.35 -2.39 -0.02 1.91 16 23 H 0.05 2.39 4.88 -2.39 -0.01 2.38 16 24 H 0.04 1.65 6.72 -2.39 -0.02 1.63 16 25 H 0.25 16.01 8.73 -92.70 -0.81 15.20 16 26 H 0.03 1.19 6.53 -2.39 -0.02 1.17 16 27 H 0.06 2.87 6.38 -2.39 -0.02 2.85 16 28 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 30 H 0.11 2.49 8.11 -2.39 -0.02 2.47 16 31 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 32 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.75 8.13 -2.39 -0.02 2.73 16 36 H 0.04 1.27 6.46 -2.39 -0.02 1.25 16 Total: -1.00 -64.89 276.43 0.62 -64.27 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.86 Total: 15.52 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.31 Total: -31.73 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.82 Total: -85.35 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -1.55 Total: -14.14 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.81 Total: 51.42 kcal Total: -64.89 0.62 -64.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709864411.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.003 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds