Wall clock time and date at job start Mon Mar 30 2020 03:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50698 * 109.46937 * 120.00389 * 2 1 3 5 5 H 1.07997 * 119.99922 * 120.00113 * 4 2 1 6 6 C 1.37873 * 119.99936 * 299.99705 * 4 2 1 7 7 N 1.31513 * 120.00365 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46954 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00126 * 8 6 4 11 11 H 1.48492 * 109.47293 * 240.00446 * 8 6 4 12 12 N 1.46902 * 109.47246 * 240.00666 * 2 1 3 13 13 C 1.47016 * 110.99529 * 306.04442 * 12 2 1 14 14 C 1.53102 * 109.25606 * 177.60836 * 13 12 2 15 15 O 1.43016 * 109.25864 * 56.84869 * 14 13 12 16 16 C 1.43018 * 113.73600 * 301.32949 * 15 14 13 17 17 H 1.08998 * 109.54459 * 298.71157 * 16 15 14 18 18 C 1.53009 * 109.50565 * 178.60359 * 16 15 14 19 19 C 1.53001 * 117.49637 * 128.83941 * 18 16 15 20 20 C 1.52993 * 117.49686 * 60.21838 * 18 16 15 21 21 C 1.47014 * 111.00085 * 182.41094 * 12 2 1 22 22 H 1.09003 * 109.47388 * 59.99782 * 1 2 3 23 23 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47462 * 299.99667 * 1 2 3 25 25 H 0.96997 * 120.00497 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.50576 * 297.53813 * 13 12 2 27 27 H 1.09000 * 109.51010 * 57.67872 * 13 12 2 28 28 H 1.08997 * 109.50964 * 176.78330 * 14 13 12 29 29 H 1.08997 * 109.50814 * 296.91371 * 14 13 12 30 30 H 1.09002 * 115.54908 * 274.54988 * 18 16 15 31 31 H 1.08999 * 117.50242 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49607 * 145.02301 * 19 18 16 33 33 H 1.09000 * 117.50104 * 214.97837 * 20 18 16 34 34 H 1.09007 * 117.50227 * 0.02562 * 20 18 16 35 35 H 1.09004 * 109.50527 * 302.32353 * 21 12 2 36 36 H 1.09002 * 109.50515 * 62.45521 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1483 -2.2858 3.6036 10 1 3.1472 -0.1860 4.8160 11 1 1.1678 -1.5869 4.8163 12 7 2.0197 -0.6924 -1.1995 13 6 1.4339 -2.0364 -1.3080 14 6 1.9232 -2.6977 -2.5992 15 8 3.3530 -2.7286 -2.6009 16 6 3.9568 -1.4363 -2.4972 17 1 3.6639 -0.8272 -3.3524 18 6 5.4795 -1.5843 -2.4730 19 6 6.2876 -0.7341 -3.4553 20 6 6.1448 -2.2400 -3.6846 21 6 3.4882 -0.7622 -1.2050 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 0.7082 1.1607 3.4844 26 1 1.7411 -2.6375 -0.4522 27 1 0.3468 -1.9591 -1.3281 28 1 1.5371 -3.7155 -2.6559 29 1 1.5705 -2.1258 -3.4574 30 1 5.9178 -1.7753 -1.4934 31 1 5.7346 -0.0690 -4.1186 32 1 7.2578 -0.3655 -3.1221 33 1 7.0211 -2.8622 -3.5023 34 1 5.4979 -2.5656 -4.4992 35 1 3.9007 0.2453 -1.1497 36 1 3.8281 -1.3429 -0.3475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709864413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:46 Heat of formation + Delta-G solvation = -15.923972 kcal Electronic energy + Delta-G solvation = -16359.396863 eV Core-core repulsion = 13844.448619 eV Total energy + Delta-G solvation = -2514.948243 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.26774 -36.80933 -35.47215 -32.51493 -30.48198 -29.29421 -25.96688 -25.13551 -23.38549 -22.16203 -21.38400 -20.03988 -19.17611 -16.34650 -16.16066 -15.56962 -15.03340 -14.61965 -14.50741 -13.98565 -13.45775 -13.17916 -12.99031 -12.28340 -11.58834 -11.45321 -11.36131 -11.13727 -10.87912 -10.79080 -10.66461 -10.46111 -10.37393 -10.17850 -10.03861 -9.83098 -9.58437 -9.27354 -8.87009 -8.41783 -7.20059 -6.01401 -4.14234 3.24473 3.33127 3.37301 3.72238 4.37712 4.38644 4.75125 5.05558 5.14452 5.23415 5.24583 5.49519 5.69830 5.70922 5.72967 5.81285 5.90106 5.97188 6.13185 6.19976 6.21901 6.39894 6.55180 6.70804 6.82078 6.89136 7.00138 7.12214 7.53560 7.66990 7.69024 7.91329 8.10257 8.28407 8.38575 8.94955 9.53604 10.98850 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.008191 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.165131 B = 3417.693599 C = 3800.664754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.206 3.794 3 H 0.040 0.960 4 C -0.542 4.542 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.887 5.887 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.537 5.537 13 C 0.021 3.979 14 C 0.064 3.936 15 O -0.386 6.386 16 C 0.123 3.877 17 H 0.057 0.943 18 C -0.144 4.144 19 C -0.174 4.174 20 C -0.169 4.169 21 C 0.038 3.962 22 H 0.015 0.985 23 H 0.028 0.972 24 H 0.085 0.915 25 H 0.261 0.739 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -4.031 -9.723 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.100 3.900 3 H 0.058 0.942 4 C -0.581 4.581 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.262 5.262 13 C -0.108 4.108 14 C -0.013 4.013 15 O -0.305 6.305 16 C 0.066 3.934 17 H 0.075 0.925 18 C -0.163 4.163 19 C -0.211 4.211 20 C -0.206 4.206 21 C -0.091 4.091 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.218 -3.795 -10.005 11.905 hybrid contribution 0.346 -0.663 1.828 1.976 sum 5.564 -4.459 -8.176 10.848 Atomic orbital electron populations 1.21852 0.97746 0.99171 1.00415 1.19297 0.92278 0.94164 0.84283 0.94178 1.21741 1.31762 1.12881 0.91673 0.92477 1.24905 0.94815 0.94835 0.98897 1.69885 1.36490 1.22807 1.23379 0.86611 0.78739 0.79801 0.83326 1.19894 1.20960 1.20955 1.62765 1.04999 1.16003 1.42391 1.22622 1.00250 0.91461 0.96439 1.22686 0.80769 1.00265 0.97530 1.87895 1.19381 1.28616 1.94623 1.21681 0.89643 0.84330 0.97789 0.92521 1.22193 0.93044 1.05391 0.95625 1.22972 1.01411 0.94005 1.02743 1.22796 1.02520 0.94946 1.00338 1.22476 0.90340 1.00496 0.95763 0.96622 0.95305 0.89650 0.92931 0.93609 0.90245 0.89583 0.93407 0.87392 0.88751 0.88683 0.89092 0.88726 0.90877 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.54 37.16 0.32 -2.92 16 2 C 0.21 5.18 2.48 -68.86 -0.17 5.01 16 3 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.54 -14.65 7.12 -34.44 -0.25 -14.90 16 5 H 0.06 1.58 5.79 -52.49 -0.30 1.28 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 N -0.54 -11.71 4.77 -227.71 -1.09 -12.79 16 13 C 0.02 0.42 4.91 -3.71 -0.02 0.40 16 14 C 0.06 1.08 7.01 37.21 0.26 1.34 16 15 O -0.39 -7.00 10.38 -35.23 -0.37 -7.36 16 16 C 0.12 2.12 3.00 -26.68 -0.08 2.04 16 17 H 0.06 0.96 7.90 -51.93 -0.41 0.55 16 18 C -0.14 -2.12 5.40 -90.62 -0.49 -2.60 16 19 C -0.17 -2.09 10.18 -26.73 -0.27 -2.36 16 20 C -0.17 -2.09 10.16 -26.74 -0.27 -2.37 16 21 C 0.04 0.77 4.54 -3.71 -0.02 0.76 16 22 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 23 H 0.03 0.66 6.27 -51.93 -0.33 0.33 16 24 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.05 1.02 6.93 -51.93 -0.36 0.66 16 27 H 0.08 1.55 6.08 -51.93 -0.32 1.23 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.62 8.11 -51.93 -0.42 1.20 16 31 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.05 1.12 6.42 -51.93 -0.33 0.79 16 LS Contribution 281.03 15.07 4.24 4.24 Total: -1.00 -28.36 281.03 -8.41 -36.78 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.72 Total: 1.13 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -1.08 Total: -13.82 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.46 Total: -37.24 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.37 Total: -7.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.36 -8.41 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709864413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.851 kcal (2) G-P(sol) polarization free energy of solvation -28.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds