Wall clock time and date at job start Mon Mar 30 2020 03:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46921 * 2 1 4 4 C 1.50698 * 109.46937 * 120.00389 * 2 1 3 5 5 H 1.07997 * 119.99922 * 120.00113 * 4 2 1 6 6 C 1.37873 * 119.99936 * 299.99705 * 4 2 1 7 7 N 1.31513 * 120.00365 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46954 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00126 * 8 6 4 11 11 H 1.48492 * 109.47293 * 240.00446 * 8 6 4 12 12 N 1.46902 * 109.47246 * 240.00666 * 2 1 3 13 13 C 1.47016 * 110.99529 * 306.04442 * 12 2 1 14 14 C 1.53102 * 109.25606 * 177.60836 * 13 12 2 15 15 O 1.43016 * 109.25864 * 56.84869 * 14 13 12 16 16 C 1.43018 * 113.73600 * 301.32949 * 15 14 13 17 17 H 1.08998 * 109.54459 * 298.71157 * 16 15 14 18 18 C 1.53009 * 109.50565 * 178.60359 * 16 15 14 19 19 C 1.53001 * 117.49637 * 128.83941 * 18 16 15 20 20 C 1.52993 * 117.49686 * 60.21838 * 18 16 15 21 21 C 1.47014 * 111.00085 * 182.41094 * 12 2 1 22 22 H 1.09003 * 109.47388 * 59.99782 * 1 2 3 23 23 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47462 * 299.99667 * 1 2 3 25 25 H 0.96997 * 120.00497 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.50576 * 297.53813 * 13 12 2 27 27 H 1.09000 * 109.51010 * 57.67872 * 13 12 2 28 28 H 1.08997 * 109.50964 * 176.78330 * 14 13 12 29 29 H 1.08997 * 109.50814 * 296.91371 * 14 13 12 30 30 H 1.09002 * 115.54908 * 274.54988 * 18 16 15 31 31 H 1.08999 * 117.50242 * 0.02562 * 19 18 16 32 32 H 1.09004 * 117.49607 * 145.02301 * 19 18 16 33 33 H 1.09000 * 117.50104 * 214.97837 * 20 18 16 34 34 H 1.09007 * 117.50227 * 0.02562 * 20 18 16 35 35 H 1.09004 * 109.50527 * 302.32353 * 21 12 2 36 36 H 1.09002 * 109.50515 * 62.45521 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.1483 -2.2858 3.6036 10 1 3.1472 -0.1860 4.8160 11 1 1.1678 -1.5869 4.8163 12 7 2.0197 -0.6924 -1.1995 13 6 1.4339 -2.0364 -1.3080 14 6 1.9232 -2.6977 -2.5992 15 8 3.3530 -2.7286 -2.6009 16 6 3.9568 -1.4363 -2.4972 17 1 3.6639 -0.8272 -3.3524 18 6 5.4795 -1.5843 -2.4730 19 6 6.2876 -0.7341 -3.4553 20 6 6.1448 -2.2400 -3.6846 21 6 3.4882 -0.7622 -1.2050 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8899 25 1 0.7082 1.1607 3.4844 26 1 1.7411 -2.6375 -0.4522 27 1 0.3468 -1.9591 -1.3281 28 1 1.5371 -3.7155 -2.6559 29 1 1.5705 -2.1258 -3.4574 30 1 5.9178 -1.7753 -1.4934 31 1 5.7346 -0.0690 -4.1186 32 1 7.2578 -0.3655 -3.1221 33 1 7.0211 -2.8622 -3.5023 34 1 5.4979 -2.5656 -4.4992 35 1 3.9007 0.2453 -1.1497 36 1 3.8281 -1.3429 -0.3475 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709864413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:45 Heat of formation + Delta-G solvation = -34.004615 kcal Electronic energy + Delta-G solvation = -16360.180898 eV Core-core repulsion = 13844.448619 eV Total energy + Delta-G solvation = -2515.732279 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.75163 -38.14524 -37.00820 -34.51747 -31.97552 -31.14719 -27.62722 -27.14469 -24.90628 -23.12272 -22.97808 -21.37216 -20.98897 -18.35777 -17.58629 -17.09540 -16.61530 -16.21385 -15.93660 -15.49446 -15.20329 -14.91610 -14.42075 -13.94628 -13.46746 -13.07918 -12.94416 -12.71582 -12.50495 -12.35529 -12.30733 -12.19759 -12.08056 -11.72057 -11.50958 -11.29963 -11.21526 -10.93160 -10.53875 -10.38154 -9.07414 -8.10327 -6.32023 1.32385 1.35379 1.45476 2.35890 2.56462 3.09194 3.17515 3.30208 3.79161 3.97577 4.11877 4.18789 4.31670 4.33795 4.41399 4.45225 4.69110 4.71238 4.82002 4.83594 4.98081 5.04291 5.04890 5.09755 5.14460 5.16656 5.29580 5.32548 5.47363 5.64105 5.92135 6.09618 6.27120 6.29566 6.50551 6.85823 7.38882 8.86848 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.008191 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.165131 B = 3417.693599 C = 3800.664754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.208 3.792 3 H 0.007 0.993 4 C -0.550 4.550 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.277 1.277 12 N -0.536 5.536 13 C 0.022 3.978 14 C 0.069 3.931 15 O -0.395 6.395 16 C 0.133 3.867 17 H 0.065 0.935 18 C -0.174 4.174 19 C -0.158 4.158 20 C -0.156 4.156 21 C 0.042 3.958 22 H 0.032 0.968 23 H 0.034 0.966 24 H 0.061 0.939 25 H 0.263 0.737 26 H 0.017 0.983 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -4.924 -10.925 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H 0.025 0.975 4 C -0.589 4.589 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.550 5.550 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.202 1.202 12 N -0.260 5.260 13 C -0.107 4.107 14 C -0.008 4.008 15 O -0.314 6.314 16 C 0.075 3.925 17 H 0.083 0.917 18 C -0.193 4.193 19 C -0.194 4.194 20 C -0.193 4.193 21 C -0.087 4.087 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.036 0.964 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.915 -4.694 -11.218 13.523 hybrid contribution 0.130 -0.367 2.180 2.214 sum 6.045 -5.061 -9.038 11.993 Atomic orbital electron populations 1.21669 0.96936 0.99373 1.00007 1.19111 0.92890 0.92681 0.85222 0.97462 1.21875 1.31646 1.12558 0.92809 0.93709 1.25601 0.95069 0.95545 1.01542 1.69991 1.37187 1.23760 1.24101 0.85669 0.78309 0.78637 0.80010 1.20071 1.20394 1.20214 1.62716 1.05971 1.17088 1.40236 1.22691 1.00516 0.90043 0.97406 1.22782 0.80239 1.01859 0.95871 1.87901 1.20031 1.29092 1.94400 1.21624 0.91269 0.83825 0.95737 0.91696 1.22123 0.91569 1.09153 0.96435 1.23098 1.01457 0.94016 1.00873 1.22881 1.02410 0.95568 0.98408 1.22482 0.89349 1.00064 0.96813 0.94923 0.94671 0.92057 0.92717 0.96414 0.89762 0.86690 0.91797 0.88462 0.88056 0.86972 0.87522 0.88548 0.91537 0.96132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.54 71.98 0.61 -5.32 16 2 C 0.21 10.72 2.48 44.17 0.11 10.83 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.55 -30.48 7.12 25.60 0.18 -30.30 16 5 H 0.04 2.56 5.79 -2.91 -0.02 2.54 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -52.29 11.32 21.45 0.24 -52.04 16 8 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 N -0.54 -23.54 4.77 -874.35 -4.17 -27.71 16 13 C 0.02 0.87 4.91 86.32 0.42 1.29 16 14 C 0.07 2.18 7.01 72.02 0.50 2.68 16 15 O -0.39 -13.67 10.38 -148.98 -1.55 -15.21 16 16 C 0.13 4.45 3.00 30.63 0.09 4.54 16 17 H 0.07 2.07 7.90 -2.39 -0.02 2.06 16 18 C -0.17 -4.89 5.40 -10.79 -0.06 -4.95 16 19 C -0.16 -3.36 10.18 30.59 0.31 -3.05 16 20 C -0.16 -3.44 10.16 30.59 0.31 -3.13 16 21 C 0.04 1.73 4.54 86.31 0.39 2.12 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.03 1.62 6.27 -2.39 -0.01 1.60 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 25 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 26 H 0.02 0.79 6.93 -2.39 -0.02 0.78 16 27 H 0.08 3.20 6.08 -2.39 -0.01 3.19 16 28 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.91 8.11 -2.39 -0.02 2.89 16 31 H 0.10 2.04 8.05 -2.39 -0.02 2.02 16 32 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 35 H 0.07 2.76 8.14 -2.39 -0.02 2.75 16 36 H 0.02 0.96 6.42 -2.39 -0.02 0.94 16 Total: -1.00 -60.94 281.03 0.92 -60.01 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.04 Total: 12.35 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 3.33 Total: -23.59 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -3.93 Total: -79.76 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.55 Total: -15.21 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -60.94 0.92 -60.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709864413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.006 kcal (2) G-P(sol) polarization free energy of solvation -60.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds