Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47034 * 2 1 4 4 N 1.46489 * 109.47702 * 120.00185 * 2 1 3 5 5 C 1.33357 * 117.94882 * 299.51821 * 4 2 1 6 6 O 1.21280 * 118.24120 * 2.22307 * 5 4 2 7 7 C 1.50170 * 123.51112 * 182.21700 * 5 4 2 8 8 C 1.53076 * 109.89421 * 342.41856 * 7 5 4 9 9 C 1.53345 * 108.41942 * 48.89818 * 8 7 5 10 10 H 1.09002 * 109.60794 * 52.23071 * 9 8 7 11 11 C 1.50701 * 109.59925 * 172.55120 * 9 8 7 12 12 H 1.08005 * 119.99931 * 120.00375 * 11 9 8 13 13 C 1.37873 * 120.00256 * 299.99686 * 11 9 8 14 14 N 1.31517 * 119.99718 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00351 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47085 * 120.00140 * 15 13 11 18 18 H 1.48508 * 109.47210 * 240.00163 * 15 13 11 19 19 C 1.45758 * 117.95080 * 119.51146 * 4 2 1 20 20 H 1.08995 * 109.30016 * 281.24796 * 19 4 2 21 21 C 1.53011 * 109.12933 * 40.72307 * 19 4 2 22 22 H 1.09001 * 109.46941 * 299.99313 * 1 2 3 23 23 H 1.08994 * 109.47226 * 59.99977 * 1 2 3 24 24 H 1.08996 * 109.46676 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46941 * 240.00686 * 2 1 3 26 26 H 1.08993 * 109.47169 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47025 * 300.00813 * 3 2 1 28 28 H 1.09007 * 109.46959 * 60.00220 * 3 2 1 29 29 H 1.08994 * 109.40492 * 222.28967 * 7 5 4 30 30 H 1.09001 * 109.40144 * 102.54790 * 7 5 4 31 31 H 1.08992 * 109.67324 * 168.63040 * 8 7 5 32 32 H 1.08998 * 109.67268 * 289.13103 * 8 7 5 33 33 H 0.97010 * 119.99910 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.46702 * 173.84415 * 21 19 4 35 35 H 1.09003 * 109.46980 * 293.85189 * 21 19 4 36 36 H 1.08994 * 109.46784 * 53.84514 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 1.6797 -0.1942 2.3865 6 8 0.9530 0.7763 2.4179 7 6 2.1497 -0.7727 3.6902 8 6 2.6673 -2.1966 3.4717 9 6 3.6355 -2.1831 2.2826 10 1 4.3927 -1.4141 2.4362 11 6 4.3006 -3.5295 2.1570 12 1 4.1826 -4.1078 1.2524 13 6 5.0599 -4.0231 3.1965 14 7 5.2033 -3.3191 4.2981 15 14 5.8850 -5.6918 3.0405 16 1 5.5698 -6.2776 1.7129 17 1 7.3551 -5.5316 3.1751 18 1 5.3853 -6.5930 4.1099 19 6 2.8442 -1.8773 1.0104 20 1 2.2051 -2.7269 0.7705 21 6 3.8179 -1.6349 -0.1448 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9564 0.8901 29 1 1.3203 -0.7935 4.3971 30 1 2.9514 -0.1537 4.0928 31 1 3.1888 -2.5386 4.3656 32 1 1.8312 -2.8622 3.2573 33 1 5.7373 -3.6665 5.0297 34 1 4.5102 -2.4735 -0.2184 35 1 3.2600 -1.5413 -1.0766 36 1 4.3768 -0.7172 0.0377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709967670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = -48.746853 kcal Electronic energy + Delta-G solvation = -16750.242207 eV Core-core repulsion = 14233.870656 eV Total energy + Delta-G solvation = -2516.371550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15684 -36.32794 -35.05456 -32.40916 -31.08112 -29.77705 -27.00587 -26.72842 -24.07558 -22.58995 -21.48257 -19.98198 -17.55277 -16.86582 -15.73085 -15.41205 -14.67541 -14.48168 -13.77526 -13.51444 -13.24642 -12.85371 -12.73975 -12.24580 -12.13726 -11.92602 -11.60276 -11.23705 -11.19623 -10.99427 -10.82846 -10.75531 -10.55118 -10.41101 -10.24243 -9.81440 -9.50557 -8.99030 -8.61068 -8.39883 -7.98679 -6.11343 -4.18664 3.23097 3.32148 3.34392 3.35257 3.69425 4.34885 5.13909 5.19312 5.46882 5.51000 5.59874 5.75451 5.81268 5.93338 5.94909 6.04174 6.12184 6.15248 6.21508 6.26809 6.42380 6.50274 6.63946 6.67456 6.70460 6.83416 6.99587 7.08625 7.33962 7.59064 7.79274 7.91557 8.13153 8.35841 8.82883 8.91736 9.46708 10.94557 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.008607 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.352221 B = 3252.470240 C = 3636.594780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 C -0.167 4.167 4 N -0.591 5.591 5 C 0.522 3.478 6 O -0.577 6.577 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.045 3.955 10 H 0.035 0.965 11 C -0.511 4.511 12 H 0.060 0.940 13 C 0.063 3.937 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.141 3.859 20 H 0.062 0.938 21 C -0.152 4.152 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.084 0.916 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 3.401 -6.241 8.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.028 3.972 3 C -0.225 4.225 4 N -0.322 5.322 5 C 0.313 3.687 6 O -0.460 6.460 7 C -0.174 4.174 8 C -0.156 4.156 9 C 0.027 3.973 10 H 0.053 0.947 11 C -0.549 4.549 12 H 0.078 0.922 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.038 3.962 20 H 0.080 0.920 21 C -0.209 4.209 22 H 0.101 0.899 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.504 3.857 -6.043 8.467 hybrid contribution 0.574 -1.006 -0.046 1.159 sum -3.930 2.851 -6.090 7.788 Atomic orbital electron populations 1.22217 0.95589 1.01660 1.03121 1.21023 0.94249 0.93337 0.88613 1.22192 1.00697 0.96583 1.02990 1.47711 1.50565 1.28749 1.05198 1.20393 0.79408 0.82969 0.85961 1.90506 1.38731 1.28537 1.88179 1.21725 1.01709 1.00534 0.93467 1.21802 0.98236 0.91290 1.04267 1.18978 0.92705 0.97746 0.87916 0.94707 1.21035 1.30096 1.02365 1.01440 0.92182 1.24940 0.96197 0.97421 0.95278 1.69871 1.39761 1.37559 1.05295 0.86520 0.79214 0.84018 0.78159 1.19741 1.21029 1.21007 1.21330 0.91306 0.84672 0.98859 0.92047 1.22134 0.99509 1.02824 0.96458 0.89909 0.92811 0.93296 0.89791 0.93080 0.92763 0.90150 0.90280 0.89336 0.87719 0.94276 0.92854 0.90256 0.93996 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.09 37.16 0.34 -2.24 16 2 C 0.13 2.12 2.70 -67.93 -0.18 1.93 16 3 C -0.17 -2.58 9.07 37.16 0.34 -2.24 16 4 N -0.59 -11.09 2.68 -159.80 -0.43 -11.52 16 5 C 0.52 10.63 6.88 -11.87 -0.08 10.55 16 6 O -0.58 -12.42 12.47 5.56 0.07 -12.35 16 7 C -0.13 -2.70 6.03 -28.10 -0.17 -2.87 16 8 C -0.12 -2.62 5.17 -26.51 -0.14 -2.75 16 9 C 0.05 1.04 1.60 -91.64 -0.15 0.89 16 10 H 0.03 0.88 8.10 -51.93 -0.42 0.46 16 11 C -0.51 -12.71 7.81 -34.44 -0.27 -12.98 16 12 H 0.06 1.46 7.38 -52.48 -0.39 1.08 16 13 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 14 N -0.89 -23.66 11.31 55.43 0.63 -23.04 16 15 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.14 2.74 2.74 -68.37 -0.19 2.55 16 20 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 21 C -0.15 -2.61 8.50 37.16 0.32 -2.29 16 22 H 0.08 1.46 5.88 -51.93 -0.31 1.16 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.23 5.69 -51.93 -0.30 0.93 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.43 5.97 -51.92 -0.31 1.12 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.10 2.58 5.95 -51.93 -0.31 2.28 16 32 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 34 H 0.08 1.42 7.09 -51.93 -0.37 1.05 16 35 H 0.04 0.61 6.34 -51.93 -0.33 0.28 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 276.14 15.07 4.16 4.16 Total: -1.00 -26.72 276.14 -6.53 -33.25 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.66 Total: 2.41 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -0.28 Total: -7.91 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.20 Total: -34.55 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -26.72 -6.53 -33.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.498 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds