Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47034 * 2 1 4 4 N 1.46489 * 109.47702 * 120.00185 * 2 1 3 5 5 C 1.33357 * 117.94882 * 299.51821 * 4 2 1 6 6 O 1.21280 * 118.24120 * 2.22307 * 5 4 2 7 7 C 1.50170 * 123.51112 * 182.21700 * 5 4 2 8 8 C 1.53076 * 109.89421 * 342.41856 * 7 5 4 9 9 C 1.53345 * 108.41942 * 48.89818 * 8 7 5 10 10 H 1.09002 * 109.60794 * 52.23071 * 9 8 7 11 11 C 1.50701 * 109.59925 * 172.55120 * 9 8 7 12 12 H 1.08005 * 119.99931 * 120.00375 * 11 9 8 13 13 C 1.37873 * 120.00256 * 299.99686 * 11 9 8 14 14 N 1.31517 * 119.99718 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00351 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47047 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47085 * 120.00140 * 15 13 11 18 18 H 1.48508 * 109.47210 * 240.00163 * 15 13 11 19 19 C 1.45758 * 117.95080 * 119.51146 * 4 2 1 20 20 H 1.08995 * 109.30016 * 281.24796 * 19 4 2 21 21 C 1.53011 * 109.12933 * 40.72307 * 19 4 2 22 22 H 1.09001 * 109.46941 * 299.99313 * 1 2 3 23 23 H 1.08994 * 109.47226 * 59.99977 * 1 2 3 24 24 H 1.08996 * 109.46676 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46941 * 240.00686 * 2 1 3 26 26 H 1.08993 * 109.47169 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47025 * 300.00813 * 3 2 1 28 28 H 1.09007 * 109.46959 * 60.00220 * 3 2 1 29 29 H 1.08994 * 109.40492 * 222.28967 * 7 5 4 30 30 H 1.09001 * 109.40144 * 102.54790 * 7 5 4 31 31 H 1.08992 * 109.67324 * 168.63040 * 8 7 5 32 32 H 1.08998 * 109.67268 * 289.13103 * 8 7 5 33 33 H 0.97010 * 119.99910 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.46702 * 173.84415 * 21 19 4 35 35 H 1.09003 * 109.46980 * 293.85189 * 21 19 4 36 36 H 1.08994 * 109.46784 * 53.84514 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0185 -0.6906 1.1960 5 6 1.6797 -0.1942 2.3865 6 8 0.9530 0.7763 2.4179 7 6 2.1497 -0.7727 3.6902 8 6 2.6673 -2.1966 3.4717 9 6 3.6355 -2.1831 2.2826 10 1 4.3927 -1.4141 2.4362 11 6 4.3006 -3.5295 2.1570 12 1 4.1826 -4.1078 1.2524 13 6 5.0599 -4.0231 3.1965 14 7 5.2033 -3.3191 4.2981 15 14 5.8850 -5.6918 3.0405 16 1 5.5698 -6.2776 1.7129 17 1 7.3551 -5.5316 3.1751 18 1 5.3853 -6.5930 4.1099 19 6 2.8442 -1.8773 1.0104 20 1 2.2051 -2.7269 0.7705 21 6 3.8179 -1.6349 -0.1448 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9564 0.8901 29 1 1.3203 -0.7935 4.3971 30 1 2.9514 -0.1537 4.0928 31 1 3.1888 -2.5386 4.3656 32 1 1.8312 -2.8622 3.2573 33 1 5.7373 -3.6665 5.0297 34 1 4.5102 -2.4735 -0.2184 35 1 3.2600 -1.5413 -1.0766 36 1 4.3768 -0.7172 0.0377 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709967670.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = -62.997249 kcal Electronic energy + Delta-G solvation = -16750.860150 eV Core-core repulsion = 14233.870656 eV Total energy + Delta-G solvation = -2516.989494 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71042 -37.99401 -36.57943 -34.22608 -32.64203 -31.35484 -28.63380 -28.00886 -25.89798 -24.12061 -23.04095 -21.58652 -19.17864 -18.64355 -17.33017 -17.01331 -16.40477 -16.11766 -15.29802 -15.08489 -14.63132 -14.55701 -14.12022 -13.86717 -13.56066 -13.41623 -13.03759 -12.87715 -12.76590 -12.60563 -12.50101 -12.21177 -12.10061 -11.99159 -11.75115 -11.57917 -11.19785 -10.84313 -10.45279 -10.10592 -9.51231 -8.06810 -6.19540 1.45095 1.49084 1.58140 1.74643 2.20463 2.48779 3.22153 3.74792 4.07426 4.16234 4.21029 4.25859 4.36340 4.44237 4.51658 4.65385 4.73832 4.78179 4.81561 4.94035 5.01995 5.05251 5.12605 5.22062 5.31550 5.36768 5.42881 5.47001 5.64798 5.87019 5.91316 6.03408 6.29392 6.69437 6.90701 7.32792 7.48699 8.98375 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041450 B = 0.008607 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.352221 B = 3252.470240 C = 3636.594780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.123 3.877 3 C -0.161 4.161 4 N -0.589 5.589 5 C 0.517 3.483 6 O -0.590 6.590 7 C -0.130 4.130 8 C -0.110 4.110 9 C 0.045 3.955 10 H 0.003 0.997 11 C -0.518 4.518 12 H 0.065 0.935 13 C 0.016 3.984 14 N -0.915 5.915 15 Si 0.952 3.048 16 H -0.263 1.263 17 H -0.286 1.286 18 H -0.286 1.286 19 C 0.146 3.854 20 H 0.064 0.936 21 C -0.144 4.144 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.049 0.951 25 H 0.108 0.892 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 3.113 -8.217 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.219 4.219 4 N -0.319 5.319 5 C 0.307 3.693 6 O -0.473 6.473 7 C -0.170 4.170 8 C -0.148 4.148 9 C 0.026 3.974 10 H 0.022 0.978 11 C -0.556 4.556 12 H 0.083 0.917 13 C -0.183 4.183 14 N -0.555 5.555 15 Si 0.778 3.222 16 H -0.187 1.187 17 H -0.212 1.212 18 H -0.212 1.212 19 C 0.043 3.957 20 H 0.082 0.918 21 C -0.201 4.201 22 H 0.075 0.925 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.980 3.567 -8.046 10.113 hybrid contribution 0.710 -0.889 0.564 1.270 sum -4.270 2.678 -7.482 9.022 Atomic orbital electron populations 1.22143 0.94791 1.01737 1.03263 1.21346 0.94940 0.93657 0.88015 1.22126 1.00435 0.96145 1.03158 1.47734 1.49968 1.28454 1.05759 1.20335 0.79536 0.83006 0.86423 1.90514 1.39343 1.29045 1.88424 1.21651 1.01988 0.99008 0.94314 1.21614 0.97759 0.92521 1.02935 1.18885 0.92460 0.96037 0.90029 0.97843 1.21358 1.29806 1.03101 1.01371 0.91704 1.25659 0.97039 1.00468 0.95161 1.70003 1.40541 1.39011 1.05911 0.85594 0.77950 0.80324 0.78294 1.18724 1.21212 1.21186 1.21168 0.91511 0.85145 0.97869 0.91805 1.22055 0.99030 1.02212 0.96848 0.92547 0.89837 0.93228 0.87426 0.93402 0.89714 0.92812 0.88917 0.89829 0.90403 0.94278 0.93065 0.91092 0.90679 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 9.09 71.98 0.65 -3.85 16 2 C 0.12 3.61 2.70 45.00 0.12 3.73 16 3 C -0.16 -4.59 9.07 71.98 0.65 -3.93 16 4 N -0.59 -21.24 2.68 -778.68 -2.09 -23.33 16 5 C 0.52 20.80 6.88 87.71 0.60 21.40 16 6 O -0.59 -25.11 12.47 -3.03 -0.04 -25.15 16 7 C -0.13 -5.25 6.03 29.71 0.18 -5.07 16 8 C -0.11 -4.96 5.17 30.74 0.16 -4.80 16 9 C 0.04 2.05 1.60 -11.45 -0.02 2.04 16 10 H 0.00 0.18 8.10 -2.39 -0.02 0.16 16 11 C -0.52 -25.67 7.81 25.60 0.20 -25.47 16 12 H 0.06 3.09 7.38 -2.91 -0.02 3.07 16 13 C 0.02 0.81 5.29 84.65 0.45 1.25 16 14 N -0.92 -49.76 11.31 21.45 0.24 -49.52 16 15 Si 0.95 40.93 29.54 68.60 2.03 42.96 16 16 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 17 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 19 C 0.15 5.46 2.74 45.11 0.12 5.59 16 20 H 0.06 2.39 8.11 -2.39 -0.02 2.38 16 21 C -0.14 -4.61 8.50 71.99 0.61 -4.00 16 22 H 0.06 1.90 5.88 -2.39 -0.01 1.88 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.11 2.67 5.69 -2.39 -0.01 2.66 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.84 5.97 -2.38 -0.01 1.83 16 29 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.08 3.43 8.14 -2.39 -0.02 3.42 16 31 H 0.08 3.96 5.95 -2.39 -0.01 3.94 16 32 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 33 H 0.26 13.58 8.31 -92.70 -0.77 12.81 16 34 H 0.07 2.41 7.09 -2.39 -0.02 2.39 16 35 H 0.07 1.90 6.34 -2.39 -0.02 1.89 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -56.91 276.14 4.93 -51.98 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.05 Total: 16.17 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 3.74 Total: -13.12 kcal Atomic # 7 Polarization: -71.00 SS G_CDS: -1.84 Total: -72.85 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.04 Total: -25.15 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Total: -56.91 4.93 -51.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967670.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.016 kcal (2) G-P(sol) polarization free energy of solvation -56.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds