Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 N 1.46495 * 109.47422 * 120.00611 * 2 1 3 5 5 C 1.33354 * 117.94368 * 300.00037 * 4 2 1 6 6 O 1.21284 * 118.24616 * 357.48962 * 5 4 2 7 7 C 1.50178 * 123.50625 * 177.78051 * 5 4 2 8 8 C 1.53052 * 109.89434 * 17.57866 * 7 5 4 9 9 C 1.53347 * 108.43719 * 311.11386 * 8 7 5 10 10 H 1.08998 * 109.60228 * 307.76057 * 9 8 7 11 11 C 1.50703 * 109.60203 * 187.27489 * 9 8 7 12 12 H 1.07999 * 119.99856 * 240.81382 * 11 9 8 13 13 C 1.37879 * 120.00121 * 60.81392 * 11 9 8 14 14 N 1.31514 * 119.99827 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99839 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47558 * 59.99946 * 15 13 11 17 17 H 1.48497 * 109.46820 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46948 * 299.99500 * 15 13 11 19 19 C 1.45746 * 117.94843 * 120.01718 * 4 2 1 20 20 H 1.08993 * 109.30377 * 319.38947 * 19 4 2 21 21 C 1.53002 * 109.30068 * 78.76390 * 19 4 2 22 22 H 1.09003 * 109.46747 * 299.99236 * 1 2 3 23 23 H 1.08997 * 109.47317 * 59.99891 * 1 2 3 24 24 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46280 * 240.00508 * 2 1 3 26 26 H 1.08999 * 109.46964 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47137 * 300.00219 * 3 2 1 28 28 H 1.09004 * 109.46990 * 60.00278 * 3 2 1 29 29 H 1.09001 * 109.40210 * 137.70989 * 7 5 4 30 30 H 1.09006 * 109.39463 * 257.44785 * 7 5 4 31 31 H 1.09004 * 109.67845 * 191.36733 * 8 7 5 32 32 H 1.09000 * 109.68397 * 70.86545 * 8 7 5 33 33 H 0.96997 * 119.99902 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.47291 * 59.99775 * 21 19 4 35 35 H 1.08998 * 109.47525 * 180.02562 * 21 19 4 36 36 H 1.09003 * 109.46906 * 299.99744 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 1.6715 -0.2000 2.3865 6 8 1.0102 0.8162 2.4179 7 6 2.0611 -0.8351 3.6905 8 6 3.2233 -1.8062 3.4701 9 6 2.8774 -2.7155 2.2847 10 1 1.8976 -3.1662 2.4432 11 6 3.9197 -3.7963 2.1555 12 1 4.5080 -3.8740 1.2532 13 6 4.1222 -4.6859 3.1893 14 7 3.4061 -4.5910 4.2883 15 14 5.4147 -6.0250 3.0293 16 1 6.7480 -5.4043 2.8239 17 1 5.4349 -6.8439 4.2680 18 1 5.0881 -6.8920 1.8688 19 6 2.8534 -1.8708 1.0103 20 1 2.4559 -2.4679 0.1897 21 6 4.2787 -1.4329 0.6670 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 2.3653 -0.0601 4.3940 30 1 1.2080 -1.3777 4.0980 31 1 3.3715 -2.4105 4.3651 32 1 4.1326 -1.2468 3.2504 33 1 3.5488 -5.2166 5.0156 34 1 4.6786 -0.8273 1.4803 35 1 4.9056 -2.3134 0.5270 36 1 4.2672 -0.8458 -0.2514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709967673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = -47.888846 kcal Electronic energy + Delta-G solvation = -16788.091324 eV Core-core repulsion = 14271.756980 eV Total energy + Delta-G solvation = -2516.334344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.16587 -36.39440 -35.03689 -32.42888 -30.84277 -29.78420 -26.95703 -26.57900 -24.09856 -22.60378 -22.14835 -19.88540 -17.18759 -16.39453 -15.81765 -15.48282 -14.81841 -14.53288 -13.80423 -13.46276 -13.13111 -13.09159 -12.70233 -12.46988 -12.16411 -11.72017 -11.42928 -11.23547 -11.12267 -10.93227 -10.91423 -10.75690 -10.68695 -10.51813 -10.18450 -9.62474 -9.44109 -8.96205 -8.62059 -8.39964 -8.00452 -6.10592 -4.17555 3.25603 3.31442 3.32773 3.34746 3.68994 4.35416 5.14022 5.20144 5.45995 5.53461 5.61694 5.75833 5.86078 5.92872 6.00460 6.03459 6.15389 6.19549 6.22164 6.28402 6.44465 6.49174 6.63747 6.67104 6.72195 6.90424 7.01060 7.09389 7.36564 7.59225 7.79941 7.92094 8.13381 8.36262 8.83199 8.91559 9.47561 10.95715 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042693 B = 0.008536 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.683555 B = 3279.405318 C = 3581.909362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 C -0.168 4.168 4 N -0.590 5.590 5 C 0.523 3.477 6 O -0.578 6.578 7 C -0.135 4.135 8 C -0.117 4.117 9 C 0.046 3.954 10 H 0.033 0.967 11 C -0.513 4.513 12 H 0.063 0.937 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.141 3.859 20 H 0.066 0.934 21 C -0.151 4.151 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 5.649 -5.858 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 C -0.226 4.226 4 N -0.321 5.321 5 C 0.314 3.686 6 O -0.460 6.460 7 C -0.175 4.175 8 C -0.155 4.155 9 C 0.027 3.973 10 H 0.052 0.948 11 C -0.551 4.551 12 H 0.081 0.919 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.038 3.962 20 H 0.084 0.916 21 C -0.209 4.209 22 H 0.098 0.902 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.396 6.048 -5.652 8.395 hybrid contribution 0.755 -0.885 -0.084 1.167 sum -0.641 5.163 -5.736 7.744 Atomic orbital electron populations 1.22188 0.95488 1.01829 1.03026 1.20941 0.94317 0.93354 0.88019 1.22230 1.00593 0.96596 1.03141 1.47685 1.50167 1.29100 1.05161 1.20386 0.78496 0.83778 0.85979 1.90507 1.41449 1.25818 1.88197 1.21730 1.02158 1.00152 0.93462 1.21814 0.93889 0.95757 1.04032 1.18940 0.98149 0.92097 0.88119 0.94846 1.21050 1.19713 1.12474 1.01885 0.91919 1.24951 0.96086 0.97447 0.95337 1.69859 1.39951 1.37080 1.05621 0.86644 0.82025 0.81839 0.77430 1.20234 1.21303 1.20272 1.21276 0.89278 0.84379 1.01242 0.91574 1.22196 0.97489 1.01724 0.99484 0.90178 0.92661 0.93062 0.90475 0.93206 0.92879 0.89790 0.90311 0.89349 0.87999 0.93900 0.92762 0.92804 0.90349 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.08 37.16 0.34 -2.24 16 2 C 0.14 2.21 3.05 -67.93 -0.21 2.00 16 3 C -0.17 -2.56 9.08 37.16 0.34 -2.22 16 4 N -0.59 -11.01 2.40 -159.81 -0.38 -11.39 16 5 C 0.52 10.59 6.88 -11.87 -0.08 10.51 16 6 O -0.58 -12.38 12.47 5.55 0.07 -12.31 16 7 C -0.14 -2.70 6.03 -28.11 -0.17 -2.87 16 8 C -0.12 -2.57 5.12 -26.52 -0.14 -2.70 16 9 C 0.05 1.04 1.95 -91.63 -0.18 0.86 16 10 H 0.03 0.85 8.12 -51.93 -0.42 0.43 16 11 C -0.51 -12.67 7.82 -34.44 -0.27 -12.94 16 12 H 0.06 1.50 6.03 -52.49 -0.32 1.18 16 13 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 14 N -0.89 -23.67 11.37 55.43 0.63 -23.04 16 15 Si 0.89 19.99 29.54 -169.99 -5.02 14.96 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.14 2.73 2.59 -68.38 -0.18 2.55 16 20 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 21 C -0.15 -2.70 8.82 37.16 0.33 -2.38 16 22 H 0.08 1.41 6.01 -51.93 -0.31 1.10 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.48 5.83 -51.93 -0.30 1.18 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.10 2.50 6.02 -51.93 -0.31 2.19 16 32 H 0.04 0.92 6.40 -51.93 -0.33 0.59 16 33 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.05 1.00 6.55 -51.93 -0.34 0.66 16 35 H 0.08 1.45 6.03 -51.93 -0.31 1.13 16 36 H 0.03 0.51 8.09 -51.93 -0.42 0.09 16 LS Contribution 274.89 15.07 4.14 4.14 Total: -1.00 -26.54 274.89 -6.44 -32.97 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.56 Total: 2.54 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -0.31 Total: -7.88 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.25 Total: -34.44 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.54 -6.44 -32.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.914 kcal (2) G-P(sol) polarization free energy of solvation -26.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds