Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47076 * 2 1 4 4 N 1.46495 * 109.47422 * 120.00611 * 2 1 3 5 5 C 1.33354 * 117.94368 * 300.00037 * 4 2 1 6 6 O 1.21284 * 118.24616 * 357.48962 * 5 4 2 7 7 C 1.50178 * 123.50625 * 177.78051 * 5 4 2 8 8 C 1.53052 * 109.89434 * 17.57866 * 7 5 4 9 9 C 1.53347 * 108.43719 * 311.11386 * 8 7 5 10 10 H 1.08998 * 109.60228 * 307.76057 * 9 8 7 11 11 C 1.50703 * 109.60203 * 187.27489 * 9 8 7 12 12 H 1.07999 * 119.99856 * 240.81382 * 11 9 8 13 13 C 1.37879 * 120.00121 * 60.81392 * 11 9 8 14 14 N 1.31514 * 119.99827 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99839 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47558 * 59.99946 * 15 13 11 17 17 H 1.48497 * 109.46820 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.46948 * 299.99500 * 15 13 11 19 19 C 1.45746 * 117.94843 * 120.01718 * 4 2 1 20 20 H 1.08993 * 109.30377 * 319.38947 * 19 4 2 21 21 C 1.53002 * 109.30068 * 78.76390 * 19 4 2 22 22 H 1.09003 * 109.46747 * 299.99236 * 1 2 3 23 23 H 1.08997 * 109.47317 * 59.99891 * 1 2 3 24 24 H 1.08998 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46280 * 240.00508 * 2 1 3 26 26 H 1.08999 * 109.46964 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47137 * 300.00219 * 3 2 1 28 28 H 1.09004 * 109.46990 * 60.00278 * 3 2 1 29 29 H 1.09001 * 109.40210 * 137.70989 * 7 5 4 30 30 H 1.09006 * 109.39463 * 257.44785 * 7 5 4 31 31 H 1.09004 * 109.67845 * 191.36733 * 8 7 5 32 32 H 1.09000 * 109.68397 * 70.86545 * 8 7 5 33 33 H 0.96997 * 119.99902 * 180.02562 * 14 13 11 34 34 H 1.08997 * 109.47291 * 59.99775 * 21 19 4 35 35 H 1.08998 * 109.47525 * 180.02562 * 21 19 4 36 36 H 1.09003 * 109.46906 * 299.99744 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 1.6715 -0.2000 2.3865 6 8 1.0102 0.8162 2.4179 7 6 2.0611 -0.8351 3.6905 8 6 3.2233 -1.8062 3.4701 9 6 2.8774 -2.7155 2.2847 10 1 1.8976 -3.1662 2.4432 11 6 3.9197 -3.7963 2.1555 12 1 4.5080 -3.8740 1.2532 13 6 4.1222 -4.6859 3.1893 14 7 3.4061 -4.5910 4.2883 15 14 5.4147 -6.0250 3.0293 16 1 6.7480 -5.4043 2.8239 17 1 5.4349 -6.8439 4.2680 18 1 5.0881 -6.8920 1.8688 19 6 2.8534 -1.8708 1.0103 20 1 2.4559 -2.4679 0.1897 21 6 4.2787 -1.4329 0.6670 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 3.1301 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6768 1.9563 0.8900 29 1 2.3653 -0.0601 4.3940 30 1 1.2080 -1.3777 4.0980 31 1 3.3715 -2.4105 4.3651 32 1 4.1326 -1.2468 3.2504 33 1 3.5488 -5.2166 5.0156 34 1 4.6786 -0.8273 1.4803 35 1 4.9056 -2.3134 0.5270 36 1 4.2672 -0.8458 -0.2514 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709967673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = -61.790306 kcal Electronic energy + Delta-G solvation = -16788.694137 eV Core-core repulsion = 14271.756980 eV Total energy + Delta-G solvation = -2516.937157 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71755 -38.06756 -36.52121 -34.24619 -32.42551 -31.35804 -28.47892 -27.96968 -25.90268 -24.20407 -23.65477 -21.45984 -18.80867 -18.20716 -17.42079 -17.07886 -16.38501 -16.26363 -15.35007 -14.94874 -14.64293 -14.51157 -14.46412 -13.92490 -13.62134 -13.13917 -12.97182 -12.82479 -12.72246 -12.60059 -12.44503 -12.24768 -12.09966 -12.08431 -11.90969 -11.36174 -11.09715 -10.80009 -10.42225 -10.13522 -9.51846 -8.05368 -6.17410 1.48709 1.49617 1.55871 1.75213 2.20698 2.49913 3.24184 3.75348 4.09587 4.18707 4.21334 4.26387 4.38050 4.41953 4.61101 4.69199 4.72944 4.79130 4.81628 4.96329 5.01613 5.08061 5.13333 5.20368 5.31586 5.39440 5.44648 5.47373 5.66988 5.88549 5.93181 6.05896 6.30898 6.70613 6.92391 7.33472 7.50612 9.00057 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042693 B = 0.008536 C = 0.007815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.683555 B = 3279.405318 C = 3581.909362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.160 4.160 4 N -0.588 5.588 5 C 0.519 3.481 6 O -0.590 6.590 7 C -0.132 4.132 8 C -0.106 4.106 9 C 0.043 3.957 10 H -0.001 1.001 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.951 3.049 16 H -0.270 1.270 17 H -0.292 1.292 18 H -0.272 1.272 19 C 0.146 3.854 20 H 0.076 0.924 21 C -0.142 4.142 22 H 0.053 0.947 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.101 0.899 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.045 0.955 33 H 0.259 0.741 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.379 6.122 -7.815 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.218 4.218 4 N -0.318 5.318 5 C 0.309 3.691 6 O -0.474 6.474 7 C -0.171 4.171 8 C -0.145 4.145 9 C 0.025 3.975 10 H 0.017 0.983 11 C -0.557 4.557 12 H 0.090 0.910 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.777 3.223 16 H -0.195 1.195 17 H -0.218 1.218 18 H -0.197 1.197 19 C 0.043 3.957 20 H 0.094 0.906 21 C -0.200 4.200 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.721 6.524 -7.636 10.070 hybrid contribution 0.506 -1.021 0.505 1.246 sum -0.215 5.503 -7.131 9.010 Atomic orbital electron populations 1.22126 0.95048 1.01577 1.03204 1.21265 0.94766 0.93946 0.87478 1.22140 1.00616 0.95800 1.03230 1.47700 1.49641 1.28736 1.05702 1.20313 0.78686 0.83727 0.86415 1.90515 1.42109 1.26310 1.88437 1.21666 1.01138 1.00011 0.94320 1.21597 0.94745 0.95599 1.02509 1.18856 0.95841 0.92497 0.90345 0.98304 1.21420 1.19742 1.12645 1.01910 0.91026 1.25677 0.97893 0.99575 0.95244 1.70002 1.41472 1.37861 1.06258 0.85719 0.80027 0.79432 0.77104 1.19532 1.21832 1.19732 1.21127 0.90668 0.84392 0.99467 0.90638 1.22089 0.95818 1.01657 1.00409 0.92791 0.89638 0.93510 0.88054 0.93034 0.89989 0.92450 0.88964 0.89938 0.90803 0.93637 0.93137 0.93805 0.90869 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.62 9.08 71.98 0.65 -3.96 16 2 C 0.13 3.75 3.05 45.00 0.14 3.89 16 3 C -0.16 -4.41 9.08 71.98 0.65 -3.76 16 4 N -0.59 -21.02 2.40 -778.69 -1.87 -22.89 16 5 C 0.52 20.71 6.88 87.71 0.60 21.32 16 6 O -0.59 -25.01 12.47 -3.04 -0.04 -25.05 16 7 C -0.13 -5.30 6.03 29.70 0.18 -5.12 16 8 C -0.11 -4.73 5.12 30.73 0.16 -4.57 16 9 C 0.04 1.99 1.95 -11.45 -0.02 1.96 16 10 H 0.00 -0.06 8.12 -2.39 -0.02 -0.08 16 11 C -0.52 -25.44 7.82 25.60 0.20 -25.24 16 12 H 0.07 3.32 6.03 -2.91 -0.02 3.30 16 13 C 0.02 0.77 5.29 84.66 0.45 1.22 16 14 N -0.92 -49.91 11.37 21.45 0.24 -49.67 16 15 Si 0.95 40.77 29.54 68.60 2.03 42.80 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 19 C 0.15 5.44 2.59 45.11 0.12 5.55 16 20 H 0.08 2.68 8.03 -2.39 -0.02 2.67 16 21 C -0.14 -4.73 8.82 71.98 0.63 -4.09 16 22 H 0.05 1.84 6.01 -2.39 -0.01 1.83 16 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.10 2.52 7.79 -2.39 -0.02 2.50 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.92 5.83 -2.38 -0.01 1.90 16 29 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 31 H 0.07 3.73 6.02 -2.39 -0.01 3.71 16 32 H 0.04 1.96 6.40 -2.39 -0.02 1.94 16 33 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.04 1.54 6.55 -2.39 -0.02 1.52 16 35 H 0.07 2.52 6.03 -2.39 -0.01 2.51 16 36 H 0.06 1.68 8.09 -2.39 -0.02 1.67 16 Total: -1.00 -56.45 274.89 5.17 -51.28 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.05 Total: 16.34 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 3.76 Total: -12.81 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -1.63 Total: -72.56 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.04 Total: -25.05 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -56.45 5.17 -51.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.512 kcal (2) G-P(sol) polarization free energy of solvation -56.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds