Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46804 * 2 1 4 4 N 1.46502 * 109.47056 * 120.00179 * 2 1 3 5 5 C 1.33349 * 117.94690 * 299.99879 * 4 2 1 6 6 O 1.21285 * 118.24736 * 2.20231 * 5 4 2 7 7 C 1.50179 * 123.50881 * 182.22356 * 5 4 2 8 8 C 1.53064 * 109.89065 * 342.41994 * 7 5 4 9 9 C 1.53353 * 108.42581 * 48.90000 * 8 7 5 10 10 H 1.09000 * 109.60369 * 52.38456 * 9 8 7 11 11 C 1.50694 * 109.60517 * 172.71257 * 9 8 7 12 12 H 1.08000 * 120.00563 * 119.99899 * 11 9 8 13 13 C 1.37885 * 119.99902 * 300.00063 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.45749 * 117.94406 * 120.00553 * 4 2 1 20 20 H 1.09002 * 109.30404 * 40.60807 * 19 4 2 21 21 C 1.53004 * 109.29872 * 281.22929 * 19 4 2 22 22 H 1.08996 * 109.47330 * 299.99437 * 1 2 3 23 23 H 1.09003 * 109.47338 * 59.99947 * 1 2 3 24 24 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47283 * 240.00313 * 2 1 3 26 26 H 1.09006 * 109.47012 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47317 * 300.00033 * 3 2 1 28 28 H 1.09005 * 109.46944 * 60.00106 * 3 2 1 29 29 H 1.08998 * 109.39948 * 222.29331 * 7 5 4 30 30 H 1.09004 * 109.32627 * 102.50777 * 7 5 4 31 31 H 1.09005 * 109.67755 * 289.16659 * 8 7 5 32 32 H 1.08999 * 109.67353 * 168.62973 * 8 7 5 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08990 * 109.47435 * 298.96726 * 21 19 4 35 35 H 1.09002 * 109.46646 * 58.97312 * 21 19 4 36 36 H 1.09006 * 109.47126 * 178.96150 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6714 -0.2000 2.3866 6 8 0.9383 0.7657 2.4178 7 6 2.1402 -0.7788 3.6906 8 6 2.6685 -2.1984 3.4702 9 6 3.6414 -2.1750 2.2850 10 1 4.3942 -1.4031 2.4451 11 6 4.3133 -3.5176 2.1558 12 1 4.2016 -4.0923 1.2483 13 6 5.0708 -4.0124 3.1963 14 7 5.2073 -3.3124 4.3013 15 14 5.9031 -5.6771 3.0363 16 1 4.9869 -6.7378 3.5269 17 1 6.2348 -5.9298 1.6111 18 1 7.1493 -5.6869 3.8439 19 6 2.8531 -1.8709 1.0104 20 1 3.5487 -1.6948 0.1899 21 6 1.9656 -3.0690 0.6670 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.3080 -0.8074 4.3940 30 1 2.9365 -0.1550 4.0967 31 1 1.8379 -2.8691 3.2499 32 1 3.1887 -2.5394 4.3653 33 1 5.7398 -3.6607 5.0334 34 1 1.2736 -3.2558 1.4880 35 1 1.4023 -2.8552 -0.2415 36 1 2.5886 -3.9494 0.5093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709967681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -47.861942 kcal Electronic energy + Delta-G solvation = -16789.816909 eV Core-core repulsion = 14273.483731 eV Total energy + Delta-G solvation = -2516.333178 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.16469 -36.39420 -35.03780 -32.43061 -30.83745 -29.78190 -26.95906 -26.57984 -24.09696 -22.60097 -22.14797 -19.88478 -17.18695 -16.39320 -15.81618 -15.48362 -14.81934 -14.52834 -13.80591 -13.46106 -13.13090 -13.09246 -12.70814 -12.46964 -12.16051 -11.72161 -11.42680 -11.23266 -11.11720 -10.95108 -10.91119 -10.75197 -10.67135 -10.51078 -10.19183 -9.62812 -9.44051 -8.95512 -8.62101 -8.39823 -8.00482 -6.10596 -4.17687 3.24232 3.32109 3.33582 3.34942 3.69013 4.35316 5.14094 5.19905 5.45980 5.53483 5.61806 5.75767 5.86273 5.92872 6.00599 6.03550 6.15410 6.19709 6.22041 6.28473 6.44626 6.49324 6.63981 6.67202 6.72174 6.90409 7.01330 7.09612 7.36603 7.59610 7.79925 7.92944 8.13713 8.36380 8.83259 8.91671 9.47473 10.95364 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042738 B = 0.008541 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.991484 B = 3277.658203 C = 3581.614265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.137 3.863 3 C -0.167 4.167 4 N -0.590 5.590 5 C 0.523 3.477 6 O -0.578 6.578 7 C -0.135 4.135 8 C -0.118 4.118 9 C 0.045 3.955 10 H 0.033 0.967 11 C -0.512 4.512 12 H 0.063 0.937 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.287 1.287 19 C 0.141 3.859 20 H 0.066 0.934 21 C -0.151 4.151 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.262 0.738 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 2.884 -5.888 8.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.034 3.966 3 C -0.225 4.225 4 N -0.321 5.321 5 C 0.313 3.687 6 O -0.460 6.460 7 C -0.175 4.175 8 C -0.156 4.156 9 C 0.026 3.974 10 H 0.051 0.949 11 C -0.550 4.550 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.213 1.213 19 C 0.038 3.962 20 H 0.084 0.916 21 C -0.209 4.209 22 H 0.102 0.898 23 H 0.071 0.929 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.208 3.345 -5.689 8.407 hybrid contribution 0.574 -1.010 -0.070 1.163 sum -4.634 2.336 -5.758 7.752 Atomic orbital electron populations 1.22227 0.95440 1.01749 1.03132 1.20941 0.94474 0.93200 0.88019 1.22189 1.00723 0.96591 1.03035 1.47686 1.50464 1.28800 1.05162 1.20393 0.79375 0.82897 0.85988 1.90507 1.38415 1.28860 1.88201 1.21734 1.01680 1.00622 0.93453 1.21830 0.98284 0.91338 1.04127 1.18948 0.92575 0.97700 0.88151 0.94868 1.21086 1.29982 1.02667 1.01281 0.91888 1.24954 0.96146 0.97408 0.95355 1.69862 1.39909 1.37619 1.05118 0.86583 0.79032 0.84192 0.78138 1.20672 1.19887 1.21254 1.21275 0.90946 0.82714 1.01221 0.91582 1.22190 0.99844 0.99258 0.99565 0.89814 0.92871 0.93202 0.90474 0.93067 0.92670 0.90153 0.90311 0.89356 0.93916 0.87834 0.92825 0.92760 0.94921 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 9.08 37.16 0.34 -2.22 16 2 C 0.14 2.21 3.03 -67.93 -0.21 2.00 16 3 C -0.17 -2.58 9.08 37.16 0.34 -2.24 16 4 N -0.59 -11.01 2.40 -159.80 -0.38 -11.39 16 5 C 0.52 10.59 6.88 -11.87 -0.08 10.51 16 6 O -0.58 -12.38 12.47 5.55 0.07 -12.31 16 7 C -0.14 -2.70 6.03 -28.10 -0.17 -2.87 16 8 C -0.12 -2.59 5.12 -26.52 -0.14 -2.73 16 9 C 0.05 1.03 1.97 -91.63 -0.18 0.85 16 10 H 0.03 0.84 8.12 -51.93 -0.42 0.42 16 11 C -0.51 -12.64 7.82 -34.44 -0.27 -12.91 16 12 H 0.06 1.51 6.07 -52.49 -0.32 1.19 16 13 C 0.06 1.62 5.29 -17.82 -0.09 1.52 16 14 N -0.89 -23.65 11.31 55.43 0.63 -23.02 16 15 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 19 C 0.14 2.73 2.59 -68.37 -0.18 2.55 16 20 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 21 C -0.15 -2.70 8.82 37.16 0.33 -2.37 16 22 H 0.08 1.48 5.84 -51.93 -0.30 1.17 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.42 6.00 -51.93 -0.31 1.11 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 31 H 0.04 0.92 6.38 -51.93 -0.33 0.59 16 32 H 0.10 2.55 5.96 -51.93 -0.31 2.24 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.05 1.01 6.51 -51.93 -0.34 0.67 16 35 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.08 1.43 6.08 -51.93 -0.32 1.11 16 LS Contribution 274.77 15.07 4.14 4.14 Total: -1.00 -26.54 274.77 -6.44 -32.99 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.56 Total: 2.54 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.31 Total: -7.89 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.24 Total: -34.41 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.07 Total: -12.31 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -26.54 -6.44 -32.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.876 kcal (2) G-P(sol) polarization free energy of solvation -26.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds