Wall clock time and date at job start Mon Mar 30 2020 02:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46804 * 2 1 4 4 N 1.46502 * 109.47056 * 120.00179 * 2 1 3 5 5 C 1.33349 * 117.94690 * 299.99879 * 4 2 1 6 6 O 1.21285 * 118.24736 * 2.20231 * 5 4 2 7 7 C 1.50179 * 123.50881 * 182.22356 * 5 4 2 8 8 C 1.53064 * 109.89065 * 342.41994 * 7 5 4 9 9 C 1.53353 * 108.42581 * 48.90000 * 8 7 5 10 10 H 1.09000 * 109.60369 * 52.38456 * 9 8 7 11 11 C 1.50694 * 109.60517 * 172.71257 * 9 8 7 12 12 H 1.08000 * 120.00563 * 119.99899 * 11 9 8 13 13 C 1.37885 * 119.99902 * 300.00063 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.45749 * 117.94406 * 120.00553 * 4 2 1 20 20 H 1.09002 * 109.30404 * 40.60807 * 19 4 2 21 21 C 1.53004 * 109.29872 * 281.22929 * 19 4 2 22 22 H 1.08996 * 109.47330 * 299.99437 * 1 2 3 23 23 H 1.09003 * 109.47338 * 59.99947 * 1 2 3 24 24 H 1.09001 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47283 * 240.00313 * 2 1 3 26 26 H 1.09006 * 109.47012 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47317 * 300.00033 * 3 2 1 28 28 H 1.09005 * 109.46944 * 60.00106 * 3 2 1 29 29 H 1.08998 * 109.39948 * 222.29331 * 7 5 4 30 30 H 1.09004 * 109.32627 * 102.50777 * 7 5 4 31 31 H 1.09005 * 109.67755 * 289.16659 * 8 7 5 32 32 H 1.08999 * 109.67353 * 168.62973 * 8 7 5 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 34 34 H 1.08990 * 109.47435 * 298.96726 * 21 19 4 35 35 H 1.09002 * 109.46646 * 58.97312 * 21 19 4 36 36 H 1.09006 * 109.47126 * 178.96150 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.6714 -0.2000 2.3866 6 8 0.9383 0.7657 2.4178 7 6 2.1402 -0.7788 3.6906 8 6 2.6685 -2.1984 3.4702 9 6 3.6414 -2.1750 2.2850 10 1 4.3942 -1.4031 2.4451 11 6 4.3133 -3.5176 2.1558 12 1 4.2016 -4.0923 1.2483 13 6 5.0708 -4.0124 3.1963 14 7 5.2073 -3.3124 4.3013 15 14 5.9031 -5.6771 3.0363 16 1 4.9869 -6.7378 3.5269 17 1 6.2348 -5.9298 1.6111 18 1 7.1493 -5.6869 3.8439 19 6 2.8531 -1.8709 1.0104 20 1 3.5487 -1.6948 0.1899 21 6 1.9656 -3.0690 0.6670 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.3080 -0.8074 4.3940 30 1 2.9365 -0.1550 4.0967 31 1 1.8379 -2.8691 3.2499 32 1 3.1887 -2.5394 4.3653 33 1 5.7398 -3.6607 5.0334 34 1 1.2736 -3.2558 1.4880 35 1 1.4023 -2.8552 -0.2415 36 1 2.5886 -3.9494 0.5093 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709967681.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:59 Heat of formation + Delta-G solvation = -61.767907 kcal Electronic energy + Delta-G solvation = -16790.419917 eV Core-core repulsion = 14273.483731 eV Total energy + Delta-G solvation = -2516.936186 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71671 -38.06791 -36.52272 -34.24607 -32.42131 -31.35583 -28.48229 -27.96950 -25.90104 -24.20184 -23.65410 -21.45954 -18.80881 -18.20578 -17.41950 -17.08033 -16.38615 -16.25967 -15.35238 -14.94691 -14.64646 -14.51168 -14.46847 -13.92544 -13.61306 -13.13645 -12.97818 -12.84329 -12.71294 -12.60175 -12.42091 -12.24213 -12.10333 -12.08530 -11.91006 -11.36607 -11.09709 -10.79418 -10.42518 -10.13359 -9.51879 -8.05247 -6.17468 1.47028 1.49716 1.57421 1.75342 2.20704 2.49822 3.24005 3.75457 4.09599 4.18645 4.21454 4.26584 4.38172 4.41952 4.61181 4.69245 4.73053 4.79093 4.81622 4.96343 5.01627 5.08149 5.13583 5.20471 5.31743 5.39719 5.44602 5.47527 5.67051 5.88510 5.93327 6.06729 6.31272 6.70673 6.92449 7.33553 7.50559 8.99926 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.042738 B = 0.008541 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.991484 B = 3277.658203 C = 3581.614265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 C -0.162 4.162 4 N -0.587 5.587 5 C 0.519 3.481 6 O -0.590 6.590 7 C -0.132 4.132 8 C -0.107 4.107 9 C 0.043 3.957 10 H -0.001 1.001 11 C -0.518 4.518 12 H 0.071 0.929 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.951 3.049 16 H -0.278 1.278 17 H -0.265 1.265 18 H -0.292 1.292 19 C 0.146 3.854 20 H 0.076 0.924 21 C -0.141 4.141 22 H 0.056 0.944 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.259 0.741 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.607 2.421 -7.852 9.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 C -0.220 4.220 4 N -0.318 5.318 5 C 0.308 3.692 6 O -0.474 6.474 7 C -0.171 4.171 8 C -0.145 4.145 9 C 0.024 3.976 10 H 0.017 0.983 11 C -0.556 4.556 12 H 0.089 0.911 13 C -0.184 4.184 14 N -0.556 5.556 15 Si 0.778 3.222 16 H -0.204 1.204 17 H -0.189 1.189 18 H -0.218 1.218 19 C 0.044 3.956 20 H 0.094 0.906 21 C -0.199 4.199 22 H 0.075 0.925 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.869 2.878 -7.680 10.085 hybrid contribution 0.781 -0.823 0.524 1.250 sum -5.088 2.055 -7.156 9.017 Atomic orbital electron populations 1.22139 0.94547 1.01871 1.03222 1.21265 0.95221 0.93494 0.87476 1.22127 1.00384 0.96241 1.03210 1.47702 1.49828 1.28546 1.05702 1.20319 0.79500 0.82912 0.86423 1.90515 1.39061 1.29369 1.88441 1.21669 1.01927 0.99209 0.94314 1.21613 0.97820 0.92499 1.02618 1.18864 0.92381 0.95986 0.90367 0.98307 1.21443 1.29518 1.03322 1.01300 0.91058 1.25678 0.97052 1.00429 0.95267 1.70003 1.40749 1.39078 1.05750 0.85658 0.77755 0.80554 0.78280 1.20441 1.18934 1.21798 1.21127 0.91294 0.83769 0.99449 0.90637 1.22084 0.99360 0.98069 1.00427 0.92475 0.89979 0.93025 0.88050 0.93513 0.89647 0.92772 0.88975 0.89944 0.93673 0.90631 0.93150 0.93789 0.92109 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 9.08 71.98 0.65 -3.76 16 2 C 0.13 3.75 3.03 44.99 0.14 3.89 16 3 C -0.16 -4.62 9.08 71.98 0.65 -3.97 16 4 N -0.59 -21.02 2.40 -778.67 -1.87 -22.89 16 5 C 0.52 20.72 6.88 87.72 0.60 21.32 16 6 O -0.59 -25.03 12.47 -3.04 -0.04 -25.07 16 7 C -0.13 -5.30 6.03 29.71 0.18 -5.12 16 8 C -0.11 -4.78 5.12 30.73 0.16 -4.62 16 9 C 0.04 1.96 1.97 -11.45 -0.02 1.94 16 10 H 0.00 -0.06 8.12 -2.39 -0.02 -0.08 16 11 C -0.52 -25.37 7.82 25.60 0.20 -25.17 16 12 H 0.07 3.32 6.07 -2.91 -0.02 3.30 16 13 C 0.01 0.74 5.29 84.66 0.45 1.19 16 14 N -0.92 -49.83 11.31 21.45 0.24 -49.59 16 15 Si 0.95 40.79 29.54 68.60 2.03 42.81 16 16 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 19 C 0.15 5.44 2.59 45.11 0.12 5.56 16 20 H 0.08 2.68 8.03 -2.39 -0.02 2.66 16 21 C -0.14 -4.72 8.82 71.98 0.63 -4.08 16 22 H 0.06 1.91 5.84 -2.39 -0.01 1.90 16 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.10 2.52 7.79 -2.38 -0.02 2.50 16 26 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.85 6.00 -2.38 -0.01 1.83 16 29 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 30 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 31 H 0.04 1.95 6.38 -2.38 -0.02 1.93 16 32 H 0.08 3.82 5.96 -2.39 -0.01 3.81 16 33 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.04 1.55 6.51 -2.39 -0.02 1.53 16 35 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 36 H 0.07 2.51 6.08 -2.38 -0.01 2.49 16 Total: -1.00 -56.45 274.77 5.17 -51.28 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 1.05 Total: 16.28 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 3.76 Total: -12.82 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.63 Total: -72.48 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.04 Total: -25.07 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.81 kcal Total: -56.45 5.17 -51.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709967681.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.490 kcal (2) G-P(sol) polarization free energy of solvation -56.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds