Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47203 * 2 1 4 4 C 1.34422 * 124.34873 * 275.70198 * 3 2 1 5 5 O 1.21280 * 124.94079 * 359.60330 * 4 3 2 6 6 C 1.51277 * 110.11364 * 179.56965 * 4 3 2 7 7 C 1.54623 * 104.19894 * 343.74851 * 6 4 3 8 8 H 1.09004 * 110.97152 * 142.95058 * 7 6 4 9 9 C 1.50704 * 110.97193 * 266.67859 * 7 6 4 10 10 H 1.08000 * 119.99909 * 114.62966 * 9 7 6 11 11 C 1.37879 * 119.99837 * 294.63370 * 9 7 6 12 12 N 1.31518 * 119.99824 * 352.56452 * 11 9 7 13 13 Si 1.86797 * 119.99675 * 172.56810 * 11 9 7 14 14 H 1.48506 * 109.47228 * 265.03736 * 13 11 9 15 15 H 1.48495 * 109.47289 * 25.04044 * 13 11 9 16 16 H 1.48506 * 109.46900 * 145.04193 * 13 11 9 17 17 C 1.46756 * 124.35105 * 95.67775 * 3 2 1 18 18 H 1.09002 * 110.24604 * 316.04182 * 17 3 2 19 19 C 1.53004 * 110.24720 * 78.03536 * 17 3 2 20 20 C 1.53002 * 109.47240 * 289.74742 * 19 17 3 21 21 C 1.53008 * 109.46700 * 49.74650 * 19 17 3 22 22 H 1.09000 * 109.47020 * 184.82443 * 1 2 3 23 23 H 1.09002 * 109.46747 * 304.82600 * 1 2 3 24 24 H 1.09000 * 109.46972 * 64.81969 * 1 2 3 25 25 H 1.08997 * 109.47146 * 240.00097 * 2 1 3 26 26 H 1.09000 * 109.47585 * 119.99743 * 2 1 3 27 27 H 1.09003 * 110.48912 * 225.06589 * 6 4 3 28 28 H 1.09006 * 110.48737 * 102.42760 * 6 4 3 29 29 H 0.96995 * 119.99288 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47062 * 169.74448 * 19 17 3 31 31 H 1.08994 * 109.47127 * 69.37981 * 20 19 17 32 32 H 1.09005 * 109.46788 * 189.38300 * 20 19 17 33 33 H 1.09002 * 109.46445 * 309.37944 * 20 19 17 34 34 H 1.08991 * 109.47331 * 60.00229 * 21 19 17 35 35 H 1.09002 * 109.46600 * 180.02562 * 21 19 17 36 36 H 1.08998 * 109.46707 * 299.99912 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1672 2.1331 -1.1043 5 8 1.9245 1.7640 -2.2338 6 6 2.6809 3.5067 -0.7331 7 6 2.4243 3.6092 0.7882 8 1 3.2330 4.1453 1.2850 9 6 1.0957 4.2631 1.0683 10 1 0.3046 3.6985 1.5392 11 6 0.8901 5.5821 0.7231 12 7 1.8933 6.3113 0.2855 13 14 -0.8133 6.3331 0.8772 14 1 -1.5110 6.2504 -0.4311 15 1 -1.5911 5.5902 1.9010 16 1 -0.6918 7.7562 1.2843 17 6 2.4074 2.1220 1.2057 18 1 1.6776 1.9612 1.9991 19 6 3.7991 1.6863 1.6688 20 6 3.7291 0.2624 2.2245 21 6 4.7661 1.7243 0.4837 22 1 -0.3633 -1.0240 0.0864 23 1 -0.3633 0.5869 0.8436 24 1 -0.3633 0.4372 -0.9300 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1259 4.2785 -1.2665 28 1 3.7469 3.5859 -0.9464 29 1 1.7486 7.2393 0.0430 30 1 4.1514 2.3632 2.4471 31 1 3.5394 -0.4365 1.4100 32 1 4.6754 0.0129 2.7045 33 1 2.9227 0.1968 2.9549 34 1 4.8159 2.7386 0.0879 35 1 5.7574 1.4135 0.8136 36 1 4.4136 1.0475 -0.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709986789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = -50.246344 kcal Electronic energy + Delta-G solvation = -16845.460137 eV Core-core repulsion = 14329.023564 eV Total energy + Delta-G solvation = -2516.436573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02889 -36.42969 -33.90058 -33.41742 -31.64191 -28.76746 -27.23508 -26.25332 -24.86272 -22.71304 -20.61859 -19.92225 -18.07977 -16.71628 -15.74294 -15.17799 -14.94670 -14.43059 -13.98627 -13.46414 -13.15289 -12.80518 -12.77715 -12.33845 -12.15756 -11.84644 -11.79429 -11.38092 -11.28651 -10.96816 -10.83304 -10.73195 -10.64826 -10.43772 -10.23543 -10.14587 -9.33853 -9.04562 -8.87384 -8.39920 -7.87905 -6.13210 -4.16608 3.27381 3.35220 3.37089 3.56122 3.85429 4.36935 5.17838 5.25802 5.30522 5.33736 5.37567 5.64528 5.74551 5.80338 5.89978 5.96320 6.04425 6.10166 6.17909 6.21124 6.31404 6.40197 6.48315 6.52180 6.60287 6.65381 6.73788 6.84677 7.39367 7.48536 7.61040 7.82127 8.03456 8.24755 8.84361 9.14735 9.48717 10.95884 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.010561 C = 0.009662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.208709 B = 2650.539063 C = 2897.243721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.606 5.606 4 C 0.527 3.473 5 O -0.568 6.568 6 C -0.141 4.141 7 C 0.053 3.947 8 H 0.055 0.945 9 C -0.517 4.517 10 H 0.058 0.942 11 C 0.067 3.933 12 N -0.884 5.884 13 Si 0.889 3.111 14 H -0.280 1.280 15 H -0.273 1.273 16 H -0.286 1.286 17 C 0.137 3.863 18 H 0.075 0.925 19 C -0.105 4.105 20 C -0.149 4.149 21 C -0.149 4.149 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.263 0.737 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -9.304 3.689 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.005 4.005 3 N -0.339 5.339 4 C 0.318 3.682 5 O -0.448 6.448 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.073 0.927 9 C -0.555 4.555 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.521 5.521 13 Si 0.717 3.283 14 H -0.206 1.206 15 H -0.198 1.198 16 H -0.212 1.212 17 C 0.034 3.966 18 H 0.093 0.907 19 C -0.125 4.125 20 C -0.206 4.206 21 C -0.206 4.206 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.633 -9.388 3.050 10.216 hybrid contribution -1.004 0.453 0.071 1.103 sum 1.630 -8.935 3.121 9.603 Atomic orbital electron populations 1.22149 0.96530 1.01029 1.02911 1.21333 0.94058 0.83140 1.01920 1.48274 1.64552 1.12446 1.08674 1.21424 0.75241 0.88097 0.83466 1.90573 1.54031 1.77989 1.22207 1.22533 1.00229 0.93199 1.02170 1.19668 0.98673 0.87884 0.90320 0.92675 1.21036 0.97841 0.95995 1.40636 0.92340 1.24939 0.96732 0.96949 0.94947 1.69956 1.30148 1.08117 1.43885 0.86617 0.84749 0.78461 0.78468 1.20625 1.19823 1.21158 1.22044 0.93406 0.94409 0.86754 0.90663 1.21532 0.96425 0.96539 0.97983 1.21993 1.00958 0.97205 1.00426 1.21954 0.97784 1.02731 0.98136 0.92548 0.92178 0.92355 0.91503 0.90483 0.88186 0.90793 0.92741 0.90233 0.92695 0.93341 0.92903 0.91459 0.93704 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.23 37.16 0.38 -2.22 16 2 C 0.12 1.88 6.01 -4.04 -0.02 1.86 16 3 N -0.61 -11.63 1.84 -164.89 -0.30 -11.93 16 4 C 0.53 11.95 6.93 -10.86 -0.08 11.88 16 5 O -0.57 -14.39 17.67 5.56 0.10 -14.29 16 6 C -0.14 -3.26 5.33 -26.75 -0.14 -3.40 16 7 C 0.05 1.21 2.12 -90.14 -0.19 1.02 16 8 H 0.06 1.32 7.84 -51.93 -0.41 0.91 16 9 C -0.52 -13.33 8.52 -34.44 -0.29 -13.62 16 10 H 0.06 1.51 7.62 -52.49 -0.40 1.11 16 11 C 0.07 1.78 5.01 -17.82 -0.09 1.69 16 12 N -0.88 -24.22 12.59 55.43 0.70 -23.52 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 17 C 0.14 2.58 2.59 -67.01 -0.17 2.40 16 18 H 0.08 1.42 7.72 -51.93 -0.40 1.02 16 19 C -0.11 -1.64 2.67 -90.61 -0.24 -1.88 16 20 C -0.15 -1.91 8.19 37.16 0.30 -1.61 16 21 C -0.15 -2.33 7.95 37.16 0.30 -2.03 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 26 H 0.08 1.03 5.41 -51.93 -0.28 0.75 16 27 H 0.10 2.63 7.06 -51.93 -0.37 2.27 16 28 H 0.07 1.59 6.11 -51.93 -0.32 1.27 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.05 0.70 5.91 -51.93 -0.31 0.39 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.07 1.14 5.31 -51.93 -0.28 0.87 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.84 6.93 -51.93 -0.36 0.48 16 LS Contribution 281.63 15.07 4.24 4.24 Total: -1.00 -28.76 281.63 -6.16 -34.92 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.62 Total: 0.66 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -0.25 Total: -5.90 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.39 Total: -35.45 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: 0.10 Total: -14.29 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.76 -6.16 -34.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.328 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds