Wall clock time and date at job start Mon Mar 30 2020 03:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47203 * 2 1 4 4 C 1.34422 * 124.34873 * 275.70198 * 3 2 1 5 5 O 1.21280 * 124.94079 * 359.60330 * 4 3 2 6 6 C 1.51277 * 110.11364 * 179.56965 * 4 3 2 7 7 C 1.54623 * 104.19894 * 343.74851 * 6 4 3 8 8 H 1.09004 * 110.97152 * 142.95058 * 7 6 4 9 9 C 1.50704 * 110.97193 * 266.67859 * 7 6 4 10 10 H 1.08000 * 119.99909 * 114.62966 * 9 7 6 11 11 C 1.37879 * 119.99837 * 294.63370 * 9 7 6 12 12 N 1.31518 * 119.99824 * 352.56452 * 11 9 7 13 13 Si 1.86797 * 119.99675 * 172.56810 * 11 9 7 14 14 H 1.48506 * 109.47228 * 265.03736 * 13 11 9 15 15 H 1.48495 * 109.47289 * 25.04044 * 13 11 9 16 16 H 1.48506 * 109.46900 * 145.04193 * 13 11 9 17 17 C 1.46756 * 124.35105 * 95.67775 * 3 2 1 18 18 H 1.09002 * 110.24604 * 316.04182 * 17 3 2 19 19 C 1.53004 * 110.24720 * 78.03536 * 17 3 2 20 20 C 1.53002 * 109.47240 * 289.74742 * 19 17 3 21 21 C 1.53008 * 109.46700 * 49.74650 * 19 17 3 22 22 H 1.09000 * 109.47020 * 184.82443 * 1 2 3 23 23 H 1.09002 * 109.46747 * 304.82600 * 1 2 3 24 24 H 1.09000 * 109.46972 * 64.81969 * 1 2 3 25 25 H 1.08997 * 109.47146 * 240.00097 * 2 1 3 26 26 H 1.09000 * 109.47585 * 119.99743 * 2 1 3 27 27 H 1.09003 * 110.48912 * 225.06589 * 6 4 3 28 28 H 1.09006 * 110.48737 * 102.42760 * 6 4 3 29 29 H 0.96995 * 119.99288 * 180.02562 * 12 11 9 30 30 H 1.08998 * 109.47062 * 169.74448 * 19 17 3 31 31 H 1.08994 * 109.47127 * 69.37981 * 20 19 17 32 32 H 1.09005 * 109.46788 * 189.38300 * 20 19 17 33 33 H 1.09002 * 109.46445 * 309.37944 * 20 19 17 34 34 H 1.08991 * 109.47331 * 60.00229 * 21 19 17 35 35 H 1.09002 * 109.46600 * 180.02562 * 21 19 17 36 36 H 1.08998 * 109.46707 * 299.99912 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1672 2.1331 -1.1043 5 8 1.9245 1.7640 -2.2338 6 6 2.6809 3.5067 -0.7331 7 6 2.4243 3.6092 0.7882 8 1 3.2330 4.1453 1.2850 9 6 1.0957 4.2631 1.0683 10 1 0.3046 3.6985 1.5392 11 6 0.8901 5.5821 0.7231 12 7 1.8933 6.3113 0.2855 13 14 -0.8133 6.3331 0.8772 14 1 -1.5110 6.2504 -0.4311 15 1 -1.5911 5.5902 1.9010 16 1 -0.6918 7.7562 1.2843 17 6 2.4074 2.1220 1.2057 18 1 1.6776 1.9612 1.9991 19 6 3.7991 1.6863 1.6688 20 6 3.7291 0.2624 2.2245 21 6 4.7661 1.7243 0.4837 22 1 -0.3633 -1.0240 0.0864 23 1 -0.3633 0.5869 0.8436 24 1 -0.3633 0.4372 -0.9300 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.1259 4.2785 -1.2665 28 1 3.7469 3.5859 -0.9464 29 1 1.7486 7.2393 0.0430 30 1 4.1514 2.3632 2.4471 31 1 3.5394 -0.4365 1.4100 32 1 4.6754 0.0129 2.7045 33 1 2.9227 0.1968 2.9549 34 1 4.8159 2.7386 0.0879 35 1 5.7574 1.4135 0.8136 36 1 4.4136 1.0475 -0.2946 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709986789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:27 Heat of formation + Delta-G solvation = -66.390027 kcal Electronic energy + Delta-G solvation = -16846.160180 eV Core-core repulsion = 14329.023564 eV Total energy + Delta-G solvation = -2517.136616 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.68448 -38.14980 -35.60289 -34.86886 -33.37588 -30.37564 -28.79388 -27.58614 -26.65338 -24.16234 -22.28073 -21.41799 -19.70589 -18.57009 -17.40639 -16.78431 -16.72819 -16.14646 -15.48239 -14.90228 -14.71568 -14.34733 -14.23158 -13.78626 -13.69835 -13.45742 -13.05641 -12.99825 -12.83384 -12.75747 -12.48905 -12.30080 -12.10568 -12.01329 -11.69756 -11.47018 -11.07480 -10.89336 -10.77121 -10.36040 -9.45063 -8.17006 -6.24870 1.38688 1.42865 1.49920 1.75911 2.31158 2.41172 3.15270 3.76666 3.95862 4.05197 4.16092 4.29146 4.37554 4.51967 4.54554 4.63727 4.70808 4.76965 4.83518 4.92973 4.95876 5.00884 5.11449 5.13798 5.29399 5.31291 5.47314 5.49711 5.54064 5.68195 5.80394 5.94621 6.27571 6.35169 6.82449 7.38948 7.43724 8.91651 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.026181 B = 0.010561 C = 0.009662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.208709 B = 2650.539063 C = 2897.243721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.595 5.595 4 C 0.522 3.478 5 O -0.601 6.601 6 C -0.136 4.136 7 C 0.050 3.950 8 H 0.041 0.959 9 C -0.528 4.528 10 H 0.056 0.944 11 C 0.021 3.979 12 N -0.911 5.911 13 Si 0.942 3.058 14 H -0.287 1.287 15 H -0.264 1.264 16 H -0.281 1.281 17 C 0.144 3.856 18 H 0.080 0.920 19 C -0.101 4.101 20 C -0.143 4.143 21 C -0.146 4.146 22 H 0.094 0.906 23 H 0.053 0.947 24 H 0.027 0.973 25 H 0.067 0.933 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.262 0.738 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.756 -11.215 5.306 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.326 5.326 4 C 0.312 3.688 5 O -0.485 6.485 6 C -0.176 4.176 7 C 0.031 3.969 8 H 0.059 0.941 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.179 4.179 12 N -0.549 5.549 13 Si 0.768 3.232 14 H -0.214 1.214 15 H -0.188 1.188 16 H -0.206 1.206 17 C 0.041 3.959 18 H 0.098 0.902 19 C -0.120 4.120 20 C -0.200 4.200 21 C -0.203 4.203 22 H 0.112 0.888 23 H 0.072 0.928 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.131 0.869 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.643 -11.322 4.713 12.546 hybrid contribution -0.991 1.039 -0.415 1.494 sum 1.653 -10.283 4.298 11.267 Atomic orbital electron populations 1.22115 0.96000 1.03050 1.00970 1.21675 0.94477 0.81121 1.03701 1.48308 1.63208 1.13529 1.07555 1.21273 0.75438 0.88257 0.83807 1.90543 1.55805 1.78547 1.23558 1.22388 1.00362 0.92852 1.02043 1.19574 0.96818 0.90575 0.89888 0.94056 1.21384 0.98991 0.96173 1.39999 0.92592 1.25611 0.99550 0.97681 0.95032 1.70046 1.31663 1.08261 1.44958 0.85783 0.81259 0.78019 0.78103 1.21381 1.18816 1.20643 1.21991 0.95927 0.91688 0.86335 0.90160 1.21491 0.93772 0.98794 0.97986 1.21936 1.02648 0.94661 1.00741 1.21909 0.99328 1.01187 0.97867 0.88775 0.92794 0.95342 0.91490 0.86876 0.92063 0.89782 0.92863 0.89793 0.92366 0.91262 0.91864 0.93605 0.91073 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 10.23 71.98 0.74 -3.95 16 2 C 0.11 3.26 6.01 86.38 0.52 3.78 16 3 N -0.59 -22.09 1.84 -794.17 -1.46 -23.55 16 4 C 0.52 23.91 6.93 87.90 0.61 24.52 16 5 O -0.60 -31.01 17.67 -3.03 -0.05 -31.07 16 6 C -0.14 -6.47 5.33 30.58 0.16 -6.30 16 7 C 0.05 2.31 2.12 -10.48 -0.02 2.29 16 8 H 0.04 2.01 7.84 -2.39 -0.02 1.99 16 9 C -0.53 -27.39 8.52 25.60 0.22 -27.18 16 10 H 0.06 2.87 7.62 -2.91 -0.02 2.85 16 11 C 0.02 1.15 5.01 84.65 0.42 1.57 16 12 N -0.91 -51.05 12.59 21.45 0.27 -50.78 16 13 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 14 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 C 0.14 5.18 2.59 45.45 0.12 5.30 16 18 H 0.08 2.85 7.72 -2.39 -0.02 2.83 16 19 C -0.10 -2.88 2.67 -10.79 -0.03 -2.91 16 20 C -0.14 -3.05 8.19 71.98 0.59 -2.46 16 21 C -0.15 -4.29 7.95 71.98 0.57 -3.71 16 22 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 2.01 8.05 -2.39 -0.02 1.99 16 26 H 0.11 2.53 5.41 -2.39 -0.01 2.52 16 27 H 0.06 3.38 7.06 -2.39 -0.02 3.36 16 28 H 0.08 3.74 6.11 -2.38 -0.01 3.72 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.08 2.36 8.07 -2.39 -0.02 2.35 16 31 H 0.06 1.21 5.91 -2.39 -0.01 1.20 16 32 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.04 1.53 5.31 -2.39 -0.01 1.52 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.04 1.25 6.93 -2.39 -0.02 1.23 16 Total: -1.00 -62.91 281.63 5.73 -57.18 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: 1.05 Total: 12.21 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 3.90 Total: -9.06 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.19 Total: -74.33 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -62.91 5.73 -57.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709986789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.206 kcal (2) G-P(sol) polarization free energy of solvation -62.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds