Wall clock time and date at job start Mon Mar 30 2020 02:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.48470 * 2 1 4 4 C 1.53302 * 109.48001 * 239.95669 * 2 1 3 5 5 C 1.51432 * 108.24035 * 186.23210 * 4 2 1 6 6 O 1.20762 * 121.10970 * 229.05340 * 5 4 2 7 7 C 1.51430 * 117.78129 * 49.02173 * 5 4 2 8 8 H 1.09001 * 109.74303 * 70.68669 * 7 5 4 9 9 C 1.53004 * 109.71342 * 191.28488 * 7 5 4 10 10 C 1.50701 * 109.47211 * 293.79490 * 9 7 5 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 9 7 12 12 C 1.37871 * 119.99694 * 180.27574 * 10 9 7 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 9 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 9 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 C 1.53296 * 108.24613 * 310.97514 * 7 5 4 19 19 H 1.09006 * 109.48345 * 173.76366 * 18 7 5 20 20 C 1.52995 * 109.48801 * 293.81262 * 18 7 5 21 21 N 1.46827 * 109.48196 * 120.02838 * 2 1 3 22 22 C 1.46895 * 111.00114 * 309.73087 * 21 2 1 23 23 H 1.09001 * 109.46943 * 299.96934 * 1 2 3 24 24 H 1.08994 * 109.47244 * 59.96946 * 1 2 3 25 25 H 1.09005 * 109.47018 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.70559 * 305.91169 * 4 2 1 27 27 H 1.08996 * 109.71082 * 66.50248 * 4 2 1 28 28 H 1.09000 * 109.47211 * 173.78517 * 9 7 5 29 29 H 1.09007 * 109.46376 * 53.79059 * 9 7 5 30 30 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 31 31 H 1.09007 * 109.47062 * 59.99456 * 20 18 7 32 32 H 1.08991 * 109.47816 * 179.97438 * 20 18 7 33 33 H 1.09000 * 109.46686 * 300.00296 * 20 18 7 34 34 H 1.08995 * 109.47295 * 295.31450 * 22 21 2 35 35 H 1.09004 * 109.47320 * 55.31830 * 22 21 2 36 36 H 1.09004 * 109.46852 * 175.31335 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0413 -0.7236 -1.2511 5 6 3.5472 -0.8437 -1.1470 6 8 4.2635 -0.5261 -2.0659 7 6 4.1251 -1.3748 0.1480 8 1 3.9045 -2.4383 0.2409 9 6 5.6397 -1.1590 0.1642 10 6 6.2798 -2.0091 -0.9029 11 1 5.6675 -2.6406 -1.5296 12 6 7.6475 -1.9854 -1.0749 13 7 8.3931 -1.2167 -0.3115 14 14 8.4416 -3.0451 -2.3924 15 1 7.3920 -3.8127 -3.1095 16 1 9.1660 -2.1774 -3.3556 17 1 9.3983 -3.9881 -1.7593 18 6 3.4815 -0.6099 1.3102 19 1 3.7993 -1.0500 2.2554 20 6 3.9149 0.8565 1.2583 21 7 2.0197 -0.6927 1.1984 22 6 1.3689 -0.1743 2.4090 23 1 -0.3633 0.5134 0.8903 24 1 -0.3633 0.5143 -0.8896 25 1 -0.3633 -1.0277 -0.0005 26 1 1.5964 -1.7170 -1.3087 27 1 1.7782 -0.1508 -2.1403 28 1 6.0365 -1.4404 1.1397 29 1 5.8590 -0.1086 -0.0280 30 1 9.3554 -1.2003 -0.4323 31 1 3.5963 1.2963 0.3131 32 1 3.4568 1.4003 2.0843 33 1 5.0001 0.9176 1.3399 34 1 1.6498 0.8688 2.5541 35 1 0.2869 -0.2474 2.2995 36 1 1.6872 -0.7597 3.2716 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709989437.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:55 Heat of formation + Delta-G solvation = -59.147259 kcal Electronic energy + Delta-G solvation = -16557.238553 eV Core-core repulsion = 14040.416008 eV Total energy + Delta-G solvation = -2516.822546 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47955 -38.86580 -35.93842 -34.28028 -32.95489 -30.41310 -29.08807 -27.16942 -26.31923 -24.18646 -22.89162 -21.14920 -19.08040 -18.62193 -16.96360 -16.84792 -16.64589 -16.43219 -15.76164 -15.34855 -14.96231 -14.42911 -14.30420 -13.79652 -13.61549 -13.44612 -13.14333 -12.91486 -12.75202 -12.71136 -12.56150 -12.43104 -12.24215 -12.08764 -11.83856 -11.65239 -11.31306 -11.02939 -10.57321 -10.01980 -9.18944 -8.17675 -6.22463 1.23439 1.34211 1.36252 1.48382 2.40936 2.91104 3.15543 3.30507 3.84973 3.90110 3.93978 4.15650 4.28578 4.37083 4.47107 4.53621 4.66447 4.69088 4.77953 4.87054 4.94193 4.95105 5.04834 5.12401 5.14457 5.17163 5.29195 5.42415 5.45268 5.67375 5.81817 6.10794 6.20480 6.28304 6.83538 6.89439 7.42236 8.94908 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.044078 B = 0.007900 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.089347 B = 3543.354226 C = 3894.736093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.153 4.153 5 C 0.354 3.646 6 O -0.482 6.482 7 C -0.121 4.121 8 H 0.097 0.903 9 C 0.046 3.954 10 C -0.509 4.509 11 H 0.044 0.956 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.956 3.044 15 H -0.269 1.269 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.102 3.898 19 H 0.093 0.907 20 C -0.181 4.181 21 N -0.537 5.537 22 C 0.017 3.983 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.117 0.883 27 H 0.094 0.906 28 H 0.002 0.998 29 H -0.007 1.007 30 H 0.261 0.739 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.030 0.970 35 H 0.095 0.905 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 2.399 4.564 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 H 0.060 0.940 4 C -0.191 4.191 5 C 0.230 3.770 6 O -0.356 6.356 7 C -0.140 4.140 8 H 0.115 0.885 9 C 0.008 3.992 10 C -0.548 4.548 11 H 0.063 0.937 12 C -0.199 4.199 13 N -0.577 5.577 14 Si 0.781 3.219 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.197 1.197 18 C -0.007 4.007 19 H 0.111 0.889 20 C -0.240 4.240 21 N -0.261 5.261 22 C -0.130 4.130 23 H 0.094 0.906 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.021 0.979 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.346 2.121 4.067 17.942 hybrid contribution 1.427 0.411 -0.626 1.612 sum -15.919 2.532 3.441 16.482 Atomic orbital electron populations 1.21923 0.91030 1.03517 1.03191 1.21667 0.97463 0.95025 0.88510 0.93977 1.22486 0.92085 1.04610 0.99933 1.25394 0.92237 0.71813 0.87518 1.90399 1.65581 1.38465 1.41178 1.21983 0.96811 1.01139 0.94116 0.88463 1.18843 0.89655 0.95337 0.95352 1.21445 0.92158 1.24138 1.17020 0.93726 1.25811 0.98237 0.97355 0.98536 1.70073 1.05414 1.41055 1.41176 0.85538 0.78424 0.78739 0.79200 1.19366 1.20881 1.19670 1.21525 0.87430 0.93873 0.97878 0.88904 1.22436 1.01951 0.98018 1.01577 1.62056 1.03898 1.56610 1.03549 1.22578 1.00799 0.98209 0.91403 0.90603 0.90947 0.91016 0.86507 0.88725 0.97921 0.98837 0.93028 0.93734 0.90185 0.93412 0.95161 0.88688 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.63 71.98 0.62 -1.56 16 2 C 0.08 1.93 2.22 45.03 0.10 2.03 16 3 H 0.04 1.08 5.96 -2.39 -0.01 1.06 16 4 C -0.15 -4.34 5.64 30.18 0.17 -4.17 16 5 C 0.35 14.56 5.49 29.57 0.16 14.72 16 6 O -0.48 -24.77 15.79 -1.46 -0.02 -24.80 16 7 C -0.12 -5.06 2.37 -11.21 -0.03 -5.09 16 8 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 9 C 0.05 2.46 3.45 29.85 0.10 2.57 16 10 C -0.51 -30.71 7.68 25.60 0.20 -30.52 16 11 H 0.04 2.68 7.55 -2.91 -0.02 2.66 16 12 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 13 N -0.94 -59.39 13.29 21.45 0.28 -59.11 16 14 Si 0.96 47.69 29.54 68.60 2.03 49.72 16 15 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 18 C 0.10 3.30 2.52 45.03 0.11 3.41 16 19 H 0.09 2.93 8.07 -2.38 -0.02 2.91 16 20 C -0.18 -5.96 7.79 71.98 0.56 -5.40 16 21 N -0.54 -13.50 4.64 -870.98 -4.04 -17.54 16 22 C 0.02 0.32 8.86 127.69 1.13 1.45 16 23 H 0.08 0.96 6.21 -2.39 -0.01 0.95 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.07 8.14 -2.38 -0.02 1.06 16 26 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 29 H -0.01 -0.40 6.65 -2.38 -0.02 -0.42 16 30 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 31 H 0.04 1.52 5.58 -2.38 -0.01 1.51 16 32 H 0.08 2.10 6.68 -2.39 -0.02 2.08 16 33 H 0.05 1.86 6.47 -2.39 -0.02 1.85 16 34 H 0.03 0.54 6.61 -2.39 -0.02 0.53 16 35 H 0.09 1.32 5.90 -2.39 -0.01 1.31 16 36 H 0.07 1.29 8.12 -2.38 -0.02 1.27 16 Total: -1.00 -72.64 275.63 2.90 -69.74 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.05 Total: 4.25 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 3.59 Total: -22.26 kcal Atomic # 7 Polarization: -72.90 SS G_CDS: -3.75 Total: -76.65 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.02 Total: -24.80 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -72.64 2.90 -69.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709989437.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -72.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds