Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46493 * 109.46790 * 2 1 4 4 C 1.32903 * 117.15342 * 86.29105 * 3 2 1 5 5 O 1.21279 * 118.27905 * 5.54051 * 4 3 2 6 6 C 1.50096 * 123.44812 * 185.52569 * 4 3 2 7 7 C 1.53256 * 109.84876 * 308.39713 * 6 4 3 8 8 C 1.52541 * 108.35616 * 91.78925 * 7 6 4 9 9 C 1.53291 * 109.41747 * 327.04355 * 8 7 6 10 10 H 1.09005 * 109.56475 * 59.75826 * 9 8 7 11 11 C 1.50693 * 109.56602 * 180.10468 * 9 8 7 12 12 H 1.08007 * 120.00219 * 113.81828 * 11 9 8 13 13 C 1.37876 * 120.00441 * 293.82217 * 11 9 8 14 14 N 1.31516 * 119.99576 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00446 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46997 * 60.00074 * 15 13 11 17 17 H 1.48502 * 109.47087 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47179 * 300.00118 * 15 13 11 19 19 C 1.45885 * 117.15875 * 266.26095 * 3 2 1 20 20 H 1.08995 * 109.19737 * 269.31196 * 19 3 2 21 21 C 1.52999 * 109.19139 * 28.58975 * 19 3 2 22 22 H 1.09007 * 109.47155 * 54.82848 * 1 2 3 23 23 H 1.09000 * 109.47249 * 174.82365 * 1 2 3 24 24 H 1.08999 * 109.47092 * 294.82787 * 1 2 3 25 25 H 1.09001 * 109.47137 * 240.00202 * 2 1 3 26 26 H 1.08997 * 109.46774 * 120.00222 * 2 1 3 27 27 H 1.09002 * 109.39761 * 68.48633 * 6 4 3 28 28 H 1.08998 * 109.39833 * 188.30736 * 6 4 3 29 29 H 1.09001 * 109.69818 * 211.33971 * 7 6 4 30 30 H 1.09002 * 109.70017 * 331.94220 * 7 6 4 31 31 H 1.08998 * 109.41403 * 207.10632 * 8 7 6 32 32 H 1.08996 * 109.57417 * 87.07593 * 8 7 6 33 33 H 0.97004 * 120.00341 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.47219 * 70.30794 * 21 19 3 35 35 H 1.09007 * 109.47025 * 190.30630 * 21 19 3 36 36 H 1.09001 * 109.47052 * 310.30056 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1483 1.9785 1.1801 5 8 1.9567 1.3211 2.1811 6 6 2.5201 3.4240 1.3392 7 6 3.7839 3.7286 0.5274 8 6 3.3613 4.2034 -0.8593 9 6 2.0677 3.4906 -1.2698 10 1 1.2817 3.7172 -0.5494 11 6 1.6485 3.9554 -2.6405 12 1 1.6565 3.2648 -3.4709 13 6 1.2549 5.2624 -2.8349 14 7 1.2457 6.1036 -1.8240 15 14 0.7359 5.8388 -4.5343 16 1 -0.4297 5.0411 -4.9930 17 1 0.3608 7.2745 -4.4769 18 1 1.8634 5.6588 -5.4838 19 6 2.3200 1.9808 -1.2952 20 1 3.3658 1.7963 -1.5407 21 6 1.4329 1.3405 -2.3648 22 1 -0.3634 0.5920 -0.8401 23 1 -0.3634 -1.0235 -0.0927 24 1 -0.3633 0.4315 0.9327 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7017 4.0496 0.9830 28 1 2.7064 3.6361 2.3919 29 1 4.3582 4.5120 1.0218 30 1 4.3905 2.8272 0.4398 31 1 4.1478 3.9709 -1.5771 32 1 3.1927 5.2801 -0.8409 33 1 0.9684 7.0231 -1.9605 34 1 0.4015 1.6629 -2.2220 35 1 1.7760 1.6475 -3.3529 36 1 1.4893 0.2552 -2.2816 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709993061.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = -51.732402 kcal Electronic energy + Delta-G solvation = -16926.208512 eV Core-core repulsion = 14409.707498 eV Total energy + Delta-G solvation = -2516.501013 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.71925 -38.30779 -36.55658 -34.51259 -32.63049 -31.36347 -29.18648 -27.63677 -25.61886 -23.68879 -23.27840 -20.88142 -20.02258 -18.31307 -17.51354 -17.13262 -16.67906 -16.14636 -15.56033 -15.08765 -14.71217 -14.48916 -14.06836 -13.80558 -13.59953 -13.42083 -13.14582 -13.08126 -12.74777 -12.65531 -12.40447 -12.22242 -11.90068 -11.53105 -11.50013 -11.37109 -11.03249 -10.65734 -10.54914 -10.29873 -9.53613 -8.03957 -6.11847 1.47532 1.48980 1.54313 1.70694 2.22505 2.50795 3.27803 3.71414 4.07246 4.14470 4.19115 4.28103 4.33951 4.47392 4.49979 4.63109 4.66513 4.78606 4.88308 4.96359 5.04743 5.09790 5.14983 5.20327 5.24344 5.36480 5.51547 5.56395 5.70225 5.77822 6.00317 6.10076 6.36510 6.69531 6.97949 7.25230 7.55112 9.03436 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030751 B = 0.010398 C = 0.008676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.321027 B = 2692.217725 C = 3226.443793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.590 5.590 4 C 0.518 3.482 5 O -0.606 6.606 6 C -0.135 4.135 7 C -0.104 4.104 8 C -0.108 4.108 9 C 0.037 3.963 10 H 0.015 0.985 11 C -0.522 4.522 12 H 0.077 0.923 13 C 0.015 3.985 14 N -0.918 5.918 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.295 1.295 18 H -0.270 1.270 19 C 0.146 3.854 20 H 0.066 0.934 21 C -0.140 4.140 22 H 0.058 0.942 23 H 0.089 0.911 24 H 0.030 0.970 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.257 0.743 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.233 -8.150 -0.542 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.320 5.320 4 C 0.307 3.693 5 O -0.490 6.490 6 C -0.175 4.175 7 C -0.142 4.142 8 C -0.146 4.146 9 C 0.019 3.981 10 H 0.033 0.967 11 C -0.560 4.560 12 H 0.095 0.905 13 C -0.184 4.184 14 N -0.558 5.558 15 Si 0.771 3.229 16 H -0.199 1.199 17 H -0.221 1.221 18 H -0.195 1.195 19 C 0.044 3.956 20 H 0.084 0.916 21 C -0.197 4.197 22 H 0.077 0.923 23 H 0.107 0.893 24 H 0.050 0.950 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.114 -8.274 -0.035 8.540 hybrid contribution -0.473 0.979 -0.685 1.285 sum 1.641 -7.294 -0.720 7.511 Atomic orbital electron populations 1.22166 0.95576 1.03124 1.01196 1.21671 0.95029 0.82903 1.03400 1.47653 1.63279 1.14741 1.06279 1.20240 0.75993 0.90355 0.82664 1.90592 1.54730 1.66084 1.37617 1.21832 1.01121 0.92218 1.02321 1.21500 0.95172 1.00976 0.96507 1.21609 0.97633 1.01632 0.93755 1.19199 0.93820 0.88863 0.96251 0.96691 1.21723 1.43307 0.95609 0.95362 0.90503 1.25647 0.95996 0.97387 0.99324 1.70039 1.48908 1.04900 1.31909 0.85820 0.78872 0.76738 0.81430 1.19869 1.22144 1.19541 1.21273 0.98493 0.95056 0.80814 0.91617 1.22223 0.99555 0.99442 0.98464 0.92266 0.89267 0.95036 0.87667 0.91178 0.89435 0.89061 0.90646 0.92149 0.93752 0.92580 0.93416 0.93329 0.90832 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.91 71.98 0.71 -3.93 16 2 C 0.09 2.75 5.17 86.38 0.45 3.20 16 3 N -0.59 -21.25 2.74 -802.66 -2.20 -23.45 16 4 C 0.52 20.81 6.67 87.76 0.59 21.39 16 5 O -0.61 -26.94 16.10 -3.03 -0.05 -26.98 16 6 C -0.14 -5.19 5.39 29.74 0.16 -5.03 16 7 C -0.10 -3.71 5.73 30.53 0.17 -3.54 16 8 C -0.11 -4.57 4.83 30.54 0.15 -4.42 16 9 C 0.04 1.66 1.52 -11.41 -0.02 1.64 16 10 H 0.02 0.77 5.55 -2.38 -0.01 0.76 16 11 C -0.52 -25.24 7.62 25.60 0.19 -25.05 16 12 H 0.08 3.50 5.23 -2.91 -0.02 3.48 16 13 C 0.02 0.78 5.33 84.65 0.45 1.23 16 14 N -0.92 -50.03 11.80 21.45 0.25 -49.77 16 15 Si 0.94 40.91 29.54 68.60 2.03 42.94 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 C 0.15 5.31 2.80 45.14 0.13 5.43 16 20 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 21 C -0.14 -4.51 6.77 71.98 0.49 -4.02 16 22 H 0.06 1.77 5.94 -2.38 -0.01 1.75 16 23 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 2.52 6.04 -2.39 -0.01 2.50 16 26 H 0.07 2.21 7.14 -2.39 -0.02 2.19 16 27 H 0.09 3.80 5.90 -2.39 -0.01 3.78 16 28 H 0.09 3.22 8.09 -2.39 -0.02 3.20 16 29 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.06 2.02 7.82 -2.39 -0.02 2.00 16 31 H 0.04 1.80 8.09 -2.39 -0.02 1.78 16 32 H 0.06 2.72 6.59 -2.39 -0.02 2.71 16 33 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.05 1.73 6.68 -2.39 -0.02 1.71 16 35 H 0.07 2.39 6.23 -2.38 -0.01 2.37 16 36 H 0.07 1.83 5.56 -2.39 -0.01 1.81 16 Total: -1.00 -58.16 268.60 4.57 -53.59 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 1.07 Total: 16.77 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.47 Total: -13.09 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -1.94 Total: -73.22 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -58.16 4.57 -53.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993061.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.858 kcal (2) G-P(sol) polarization free energy of solvation -58.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds