Wall clock time and date at job start Mon Mar 30 2020 03:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.47711 * 109.47056 * 2 1 4 4 C 1.32926 * 117.30440 * 89.99874 * 3 2 1 5 5 O 1.21856 * 118.93777 * 6.95562 * 4 3 2 6 6 C 1.51828 * 122.53810 * 186.97420 * 4 3 2 7 7 C 1.53288 * 107.53071 * 287.40726 * 6 4 3 8 8 C 1.51375 * 111.02887 * 80.90645 * 7 6 4 9 9 C 1.50139 * 117.27865 * 294.24416 * 8 7 6 10 10 H 1.10297 * 108.40231 * 303.17448 * 9 8 7 11 11 C 1.51414 * 109.06071 * 187.09244 * 9 8 7 12 12 H 1.08004 * 119.99545 * 240.00075 * 11 9 8 13 13 C 1.37877 * 120.00252 * 59.99761 * 11 9 8 14 14 N 1.31515 * 119.99903 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00111 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47031 * 60.00128 * 15 13 11 17 17 H 1.48502 * 109.47244 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47304 * 300.00351 * 15 13 11 19 19 C 1.46380 * 117.88833 * 269.09757 * 3 2 1 20 20 H 1.11358 * 106.64086 * 356.08573 * 19 3 2 21 21 C 1.52226 * 112.38816 * 112.74942 * 19 3 2 22 22 H 1.08998 * 109.47138 * 60.00023 * 1 2 3 23 23 H 1.09000 * 109.47313 * 299.99801 * 1 2 3 24 24 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47138 * 119.99977 * 2 1 3 26 26 H 1.09003 * 109.47005 * 240.00607 * 2 1 3 27 27 H 1.07862 * 111.66281 * 49.51027 * 6 4 3 28 28 H 1.09576 * 108.59109 * 169.92255 * 6 4 3 29 29 H 1.09073 * 108.97316 * 201.48237 * 7 6 4 30 30 H 1.09063 * 108.97080 * 320.32806 * 7 6 4 31 31 H 1.09343 * 108.42781 * 59.48590 * 8 7 6 32 32 H 1.10319 * 107.08069 * 172.95189 * 8 7 6 33 33 H 0.96999 * 120.00242 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.46927 * 66.85392 * 21 19 3 35 35 H 1.09000 * 109.46957 * 186.84751 * 21 19 3 36 36 H 1.08994 * 109.46980 * 306.85160 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3926 0.0000 4 6 2.2256 1.9675 1.1812 5 8 2.1239 1.2927 2.1907 6 6 2.5802 3.4369 1.3240 7 6 4.0293 3.6098 0.8551 8 6 4.1062 3.6871 -0.6547 9 6 3.7232 2.4578 -1.4270 10 1 4.3570 1.6216 -1.0872 11 6 4.0326 2.6784 -2.8927 12 1 3.2402 2.6301 -3.6250 13 6 5.3257 2.9409 -3.2925 14 7 6.2906 2.9992 -2.4008 15 14 5.7075 3.2122 -5.1008 16 1 4.9340 4.3772 -5.6006 17 1 7.1598 3.4739 -5.2663 18 1 5.3321 2.0007 -5.8732 19 6 2.2698 2.0314 -1.2936 20 1 2.0862 1.2566 -2.0721 21 6 1.3007 3.1719 -1.5719 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.9113 4.0649 0.7569 28 1 2.5183 3.7098 2.3834 29 1 4.4345 4.5262 1.2861 30 1 4.6189 2.7616 1.2052 31 1 3.5078 4.5393 -0.9881 32 1 5.1487 3.9381 -0.9137 33 1 7.2005 3.1835 -2.6820 34 1 1.4849 3.9847 -0.8693 35 1 1.4464 3.5321 -2.5903 36 1 0.2773 2.8156 -1.4553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709993063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:36 Heat of formation + Delta-G solvation = -53.198056 kcal Electronic energy + Delta-G solvation = -16781.779776 eV Core-core repulsion = 14265.215207 eV Total energy + Delta-G solvation = -2516.564569 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.80021 -36.41389 -34.70604 -32.70849 -31.32490 -29.80059 -28.08187 -25.70956 -23.47201 -23.23524 -21.71996 -19.28652 -17.64330 -16.61995 -16.21405 -15.42756 -14.70506 -14.31561 -13.69271 -13.56361 -13.43077 -13.14800 -12.71554 -12.41341 -12.07095 -12.00931 -11.73448 -11.31016 -11.06838 -10.96588 -10.85527 -10.75619 -10.54740 -10.34932 -9.88025 -9.49926 -9.29277 -9.03875 -8.91910 -8.37676 -7.99167 -6.07177 -4.17254 3.25409 3.27528 3.31383 3.32550 3.62395 4.35365 5.09952 5.20770 5.42443 5.52231 5.54988 5.63608 5.71630 5.75887 5.92690 6.02319 6.08487 6.16596 6.23626 6.29143 6.41764 6.45437 6.55195 6.59410 6.79088 6.84798 6.97234 7.16803 7.47562 7.59265 7.81711 8.01702 8.19599 8.35709 8.79408 8.87308 9.48287 10.96555 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.009421 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.533835 B = 2971.503516 C = 3383.436080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.592 5.592 4 C 0.521 3.479 5 O -0.582 6.582 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.121 4.121 9 C 0.044 3.956 10 H 0.029 0.971 11 C -0.512 4.512 12 H 0.058 0.942 13 C 0.062 3.938 14 N -0.886 5.886 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.147 3.853 20 H 0.072 0.928 21 C -0.153 4.153 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.100 0.900 33 H 0.262 0.738 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -0.270 1.895 8.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.322 5.322 4 C 0.310 3.690 5 O -0.464 6.464 6 C -0.175 4.175 7 C -0.145 4.145 8 C -0.159 4.159 9 C 0.025 3.975 10 H 0.047 0.953 11 C -0.551 4.551 12 H 0.076 0.924 13 C -0.140 4.140 14 N -0.525 5.525 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C 0.045 3.955 20 H 0.090 0.910 21 C -0.211 4.211 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.594 -0.566 2.384 7.979 hybrid contribution 0.333 0.218 -1.074 1.146 sum -7.260 -0.348 1.309 7.386 Atomic orbital electron populations 1.22080 0.96389 1.01518 1.01950 1.21696 0.93870 0.83778 1.03018 1.47970 1.63680 1.13925 1.06633 1.20650 0.75157 0.90483 0.82751 1.90765 1.54279 1.65042 1.36363 1.22105 1.00100 0.92657 1.02624 1.21279 0.92810 1.01116 0.99250 1.20936 1.06154 0.98838 0.89934 1.18415 0.88375 0.94831 0.95914 0.95282 1.21210 0.93490 1.49047 0.91319 0.92397 1.24948 0.96349 0.95232 0.97458 1.69816 1.00693 1.48934 1.33043 0.86643 0.77253 0.78713 0.85307 1.20238 1.21311 1.20288 1.21378 0.97691 0.95270 0.81144 0.90982 1.21982 0.97268 0.98916 1.02936 0.92637 0.92706 0.92132 0.90020 0.90734 0.89392 0.90342 0.92473 0.92681 0.94789 0.88224 0.92778 0.92421 0.90681 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.23 37.16 0.38 -1.84 16 2 C 0.10 1.63 5.95 -3.38 -0.02 1.61 16 3 N -0.59 -11.10 2.44 -165.12 -0.40 -11.50 16 4 C 0.52 10.41 6.61 -11.25 -0.07 10.33 16 5 O -0.58 -13.07 16.20 5.05 0.08 -12.99 16 6 C -0.13 -2.39 5.50 -27.18 -0.15 -2.54 16 7 C -0.11 -2.06 5.70 -27.40 -0.16 -2.21 16 8 C -0.12 -2.66 3.94 -28.97 -0.11 -2.77 16 9 C 0.04 1.01 1.57 -93.33 -0.15 0.86 16 10 H 0.03 0.77 8.24 -51.19 -0.42 0.35 16 11 C -0.51 -12.81 7.96 -34.09 -0.27 -13.08 16 12 H 0.06 1.40 7.33 -52.48 -0.38 1.02 16 13 C 0.06 1.60 5.26 -17.82 -0.09 1.51 16 14 N -0.89 -24.07 11.20 55.43 0.62 -23.45 16 15 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.15 2.82 2.02 -68.87 -0.14 2.69 16 20 H 0.07 1.38 7.35 -50.57 -0.37 1.01 16 21 C -0.15 -2.58 8.85 36.76 0.33 -2.26 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.43 7.07 -51.93 -0.37 1.06 16 26 H 0.07 1.14 7.66 -51.93 -0.40 0.74 16 27 H 0.09 1.43 5.54 -52.56 -0.29 1.13 16 28 H 0.08 1.28 8.14 -51.60 -0.42 0.86 16 29 H 0.06 0.99 8.15 -51.89 -0.42 0.56 16 30 H 0.05 1.15 7.90 -51.89 -0.41 0.74 16 31 H 0.03 0.72 7.15 -51.73 -0.37 0.35 16 32 H 0.10 2.52 5.71 -51.18 -0.29 2.23 16 33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.06 0.95 4.47 -51.93 -0.23 0.72 16 35 H 0.07 1.29 7.45 -51.93 -0.39 0.90 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 277.31 15.07 4.18 4.18 Total: -1.00 -28.10 277.31 -6.59 -34.69 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.59 Total: 1.63 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.46 Total: -7.70 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.22 Total: -34.95 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.08 Total: -12.99 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -28.10 -6.59 -34.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.508 kcal (2) G-P(sol) polarization free energy of solvation -28.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds