Wall clock time and date at job start Mon Mar 30 2020 03:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.47711 * 109.47056 * 2 1 4 4 C 1.32926 * 117.30440 * 89.99874 * 3 2 1 5 5 O 1.21856 * 118.93777 * 6.95562 * 4 3 2 6 6 C 1.51828 * 122.53810 * 186.97420 * 4 3 2 7 7 C 1.53288 * 107.53071 * 287.40726 * 6 4 3 8 8 C 1.51375 * 111.02887 * 80.90645 * 7 6 4 9 9 C 1.50139 * 117.27865 * 294.24416 * 8 7 6 10 10 H 1.10297 * 108.40231 * 303.17448 * 9 8 7 11 11 C 1.51414 * 109.06071 * 187.09244 * 9 8 7 12 12 H 1.08004 * 119.99545 * 240.00075 * 11 9 8 13 13 C 1.37877 * 120.00252 * 59.99761 * 11 9 8 14 14 N 1.31515 * 119.99903 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 120.00111 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47031 * 60.00128 * 15 13 11 17 17 H 1.48502 * 109.47244 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47304 * 300.00351 * 15 13 11 19 19 C 1.46380 * 117.88833 * 269.09757 * 3 2 1 20 20 H 1.11358 * 106.64086 * 356.08573 * 19 3 2 21 21 C 1.52226 * 112.38816 * 112.74942 * 19 3 2 22 22 H 1.08998 * 109.47138 * 60.00023 * 1 2 3 23 23 H 1.09000 * 109.47313 * 299.99801 * 1 2 3 24 24 H 1.08999 * 109.46846 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47138 * 119.99977 * 2 1 3 26 26 H 1.09003 * 109.47005 * 240.00607 * 2 1 3 27 27 H 1.07862 * 111.66281 * 49.51027 * 6 4 3 28 28 H 1.09576 * 108.59109 * 169.92255 * 6 4 3 29 29 H 1.09073 * 108.97316 * 201.48237 * 7 6 4 30 30 H 1.09063 * 108.97080 * 320.32806 * 7 6 4 31 31 H 1.09343 * 108.42781 * 59.48590 * 8 7 6 32 32 H 1.10319 * 107.08069 * 172.95189 * 8 7 6 33 33 H 0.96999 * 120.00242 * 179.97438 * 14 13 11 34 34 H 1.09003 * 109.46927 * 66.85392 * 21 19 3 35 35 H 1.09000 * 109.46957 * 186.84751 * 21 19 3 36 36 H 1.08994 * 109.46980 * 306.85160 * 21 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3926 0.0000 4 6 2.2256 1.9675 1.1812 5 8 2.1239 1.2927 2.1907 6 6 2.5802 3.4369 1.3240 7 6 4.0293 3.6098 0.8551 8 6 4.1062 3.6871 -0.6547 9 6 3.7232 2.4578 -1.4270 10 1 4.3570 1.6216 -1.0872 11 6 4.0326 2.6784 -2.8927 12 1 3.2402 2.6301 -3.6250 13 6 5.3257 2.9409 -3.2925 14 7 6.2906 2.9992 -2.4008 15 14 5.7075 3.2122 -5.1008 16 1 4.9340 4.3772 -5.6006 17 1 7.1598 3.4739 -5.2663 18 1 5.3321 2.0007 -5.8732 19 6 2.2698 2.0314 -1.2936 20 1 2.0862 1.2566 -2.0721 21 6 1.3007 3.1719 -1.5719 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.9113 4.0649 0.7569 28 1 2.5183 3.7098 2.3834 29 1 4.4345 4.5262 1.2861 30 1 4.6189 2.7616 1.2052 31 1 3.5078 4.5393 -0.9881 32 1 5.1487 3.9381 -0.9137 33 1 7.2005 3.1835 -2.6820 34 1 1.4849 3.9847 -0.8693 35 1 1.4464 3.5321 -2.5903 36 1 0.2773 2.8156 -1.4553 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709993063.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:35 Heat of formation + Delta-G solvation = -68.927697 kcal Electronic energy + Delta-G solvation = -16782.461864 eV Core-core repulsion = 14265.215207 eV Total energy + Delta-G solvation = -2517.246657 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35607 -38.10465 -36.23232 -34.53871 -32.83561 -31.33374 -29.58449 -27.47797 -25.13554 -24.71155 -23.18888 -20.95004 -19.23367 -18.42667 -17.81290 -17.06067 -16.49605 -15.89353 -15.14759 -15.13672 -14.83753 -14.71531 -14.27834 -14.07869 -13.52619 -13.40307 -13.08140 -12.82077 -12.80113 -12.67504 -12.43044 -12.34074 -12.07436 -11.82643 -11.64083 -11.27382 -10.93165 -10.79068 -10.61745 -10.31395 -9.56527 -8.04239 -6.20755 1.46825 1.47204 1.54094 1.71077 2.15989 2.47764 3.22164 3.62620 3.99147 4.12431 4.19102 4.26422 4.31477 4.47001 4.56285 4.58901 4.70456 4.75311 4.82469 4.93915 4.97760 5.03091 5.08127 5.22382 5.28655 5.33432 5.44892 5.58438 5.64658 5.72618 5.92808 6.17652 6.38463 6.68335 6.92369 7.25246 7.48291 8.97955 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.032951 B = 0.009421 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.533835 B = 2971.503516 C = 3383.436080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.091 3.909 3 N -0.592 5.592 4 C 0.511 3.489 5 O -0.612 6.612 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.112 4.112 9 C 0.049 3.951 10 H -0.021 1.021 11 C -0.520 4.520 12 H 0.067 0.933 13 C 0.012 3.988 14 N -0.917 5.917 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.293 1.293 18 H -0.273 1.273 19 C 0.154 3.846 20 H 0.073 0.927 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.259 0.741 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.626 0.373 1.140 9.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 N -0.321 5.321 4 C 0.300 3.700 5 O -0.497 6.497 6 C -0.166 4.166 7 C -0.138 4.138 8 C -0.150 4.150 9 C 0.029 3.971 10 H -0.003 1.003 11 C -0.559 4.559 12 H 0.085 0.915 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.779 3.221 16 H -0.192 1.192 17 H -0.219 1.219 18 H -0.198 1.198 19 C 0.052 3.948 20 H 0.091 0.909 21 C -0.204 4.204 22 H 0.084 0.916 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.472 0.072 1.608 9.608 hybrid contribution 0.946 -0.041 -0.837 1.264 sum -8.526 0.032 0.772 8.561 Atomic orbital electron populations 1.21982 0.93755 1.03197 1.01807 1.21891 0.96017 0.82522 1.02665 1.48047 1.63068 1.14802 1.06191 1.21095 0.74822 0.91422 0.82613 1.90749 1.55746 1.65925 1.37258 1.22095 0.98852 0.91508 1.04143 1.21169 0.94047 1.01196 0.97361 1.20786 1.03987 0.98566 0.91703 1.18359 0.90178 0.93451 0.95065 1.00281 1.21597 0.93673 1.48015 0.92575 0.91527 1.25704 0.96483 0.95358 1.01111 1.69988 1.00801 1.50143 1.34765 0.85694 0.76683 0.78892 0.80872 1.19179 1.21856 1.19830 1.21195 0.95904 0.96370 0.81374 0.90901 1.21916 0.97763 0.97810 1.02896 0.91583 0.93845 0.89643 0.91640 0.89875 0.87215 0.88584 0.90104 0.95281 0.93691 0.91780 0.93204 0.91976 0.90808 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 10.23 71.98 0.74 -3.00 16 2 C 0.09 2.90 5.95 86.15 0.51 3.42 16 3 N -0.59 -21.62 2.44 -795.51 -1.94 -23.56 16 4 C 0.51 19.96 6.61 88.30 0.58 20.55 16 5 O -0.61 -27.29 16.20 -4.85 -0.08 -27.37 16 6 C -0.13 -4.23 5.50 30.30 0.17 -4.06 16 7 C -0.10 -3.79 5.70 30.16 0.17 -3.62 16 8 C -0.11 -4.94 3.94 29.14 0.11 -4.83 16 9 C 0.05 2.25 1.57 -12.55 -0.02 2.23 16 10 H -0.02 -1.17 8.24 -1.69 -0.01 -1.18 16 11 C -0.52 -25.90 7.96 25.83 0.21 -25.70 16 12 H 0.07 3.14 7.33 -2.91 -0.02 3.11 16 13 C 0.01 0.62 5.26 84.65 0.45 1.06 16 14 N -0.92 -51.07 11.20 21.45 0.24 -50.83 16 15 Si 0.95 41.19 29.54 68.60 2.03 43.21 16 16 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 C 0.15 5.70 2.02 44.45 0.09 5.79 16 20 H 0.07 2.69 7.35 -1.11 -0.01 2.68 16 21 C -0.15 -4.48 8.85 71.73 0.63 -3.85 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.07 2.29 7.07 -2.39 -0.02 2.28 16 26 H 0.08 2.46 7.66 -2.39 -0.02 2.44 16 27 H 0.11 3.20 5.54 -2.98 -0.02 3.18 16 28 H 0.10 2.90 8.14 -2.08 -0.02 2.89 16 29 H 0.08 2.68 8.15 -2.35 -0.02 2.66 16 30 H 0.03 1.23 7.90 -2.35 -0.02 1.21 16 31 H 0.04 1.84 7.15 -2.20 -0.02 1.83 16 32 H 0.06 3.31 5.71 -1.68 -0.01 3.30 16 33 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 34 H 0.06 1.84 4.47 -2.39 -0.01 1.83 16 35 H 0.07 2.31 7.45 -2.39 -0.02 2.29 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -61.05 277.31 4.96 -56.09 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.07 Total: 14.48 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 3.64 Total: -12.01 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.70 Total: -74.39 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.08 Total: -27.37 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -61.05 4.96 -56.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709993063.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.840 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds