Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00168 * 2 1 4 4 H 1.08001 * 119.99420 * 38.96476 * 3 2 1 5 5 C 1.38813 * 119.99927 * 218.96400 * 3 2 1 6 6 N 1.31614 * 120.00235 * 27.07693 * 5 3 2 7 7 Si 1.86801 * 119.99400 * 207.07346 * 5 3 2 8 8 H 1.48489 * 109.47712 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47002 * 239.99732 * 7 5 3 10 10 H 1.48506 * 109.46845 * 120.00512 * 7 5 3 11 11 C 1.46504 * 119.99817 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46961 * 269.99598 * 11 2 1 13 13 H 1.09003 * 109.82547 * 305.70206 * 12 11 2 14 14 C 1.54454 * 109.83211 * 184.81498 * 12 11 2 15 15 C 1.55615 * 102.28995 * 219.18365 * 14 12 11 16 16 C 1.54097 * 100.84551 * 33.10421 * 15 14 12 17 17 C 1.52883 * 115.01806 * 94.68320 * 16 15 14 18 18 C 1.53948 * 86.80968 * 91.88299 * 17 16 15 19 19 C 1.52860 * 115.04122 * 194.80199 * 16 15 14 20 20 O 1.42643 * 106.36039 * 324.77444 * 16 15 14 21 21 H 1.09000 * 109.47534 * 95.13049 * 1 2 3 22 22 H 1.09003 * 109.47232 * 215.12900 * 1 2 3 23 23 H 1.09004 * 109.47054 * 335.12203 * 1 2 3 24 24 H 0.97004 * 119.99930 * 6.08457 * 6 5 3 25 25 H 1.09000 * 109.47430 * 29.99434 * 11 2 1 26 26 H 1.09004 * 109.47150 * 150.00083 * 11 2 1 27 27 H 1.09002 * 110.82540 * 337.34544 * 14 12 11 28 28 H 1.09001 * 110.82954 * 100.91865 * 14 12 11 29 29 H 1.08999 * 111.08817 * 275.22286 * 15 14 12 30 30 H 1.08998 * 111.21038 * 151.03528 * 15 14 12 31 31 H 1.08997 * 113.65669 * 206.36706 * 17 16 15 32 32 H 1.09000 * 113.65687 * 337.40918 * 17 16 15 33 33 H 1.08994 * 113.58868 * 270.17223 * 18 17 16 34 34 H 1.09005 * 113.58515 * 139.34640 * 18 17 16 35 35 H 1.09001 * 113.66024 * 22.61899 * 19 16 15 36 36 H 1.09000 * 113.65780 * 153.65399 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7898 2.0171 0.5882 5 6 3.3062 1.3196 -0.7560 6 7 3.4742 0.5876 -1.8368 7 14 4.6241 2.5384 -0.2391 8 1 4.1970 3.2326 1.0022 9 1 4.8269 3.5362 -1.3201 10 1 5.8965 1.8149 0.0118 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9532 -0.9130 1.9901 14 6 3.3279 -2.9835 1.4527 15 6 2.6926 -3.8128 2.6060 16 6 1.2127 -3.4033 2.4764 17 6 0.3517 -4.3477 1.6372 18 6 0.0243 -5.0788 2.9518 19 6 0.3358 -3.7573 3.6774 20 8 1.2081 -2.0333 2.0794 21 1 -0.3634 -0.0919 -1.0235 22 1 -0.3634 -0.8405 0.5913 23 1 -0.3633 0.9323 0.4323 24 1 2.7547 0.0200 -2.1549 25 1 1.6083 -2.0282 -0.5146 26 1 3.1499 -1.1382 -0.5143 27 1 3.2500 -3.5156 0.5045 28 1 4.3660 -2.7378 1.6765 29 1 3.0995 -3.5160 3.5727 30 1 2.8207 -4.8823 2.4397 31 1 -0.5107 -3.8629 1.1797 32 1 0.9238 -4.9507 0.9321 33 1 0.7218 -5.8819 3.1896 34 1 -1.0186 -5.3853 3.0323 35 1 0.8951 -3.8883 4.6038 36 1 -0.5311 -3.1068 3.7929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712536083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = -11.660618 kcal Electronic energy + Delta-G solvation = -16521.040867 eV Core-core repulsion = 14006.277496 eV Total energy + Delta-G solvation = -2514.763371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.15385 -36.63786 -34.96222 -31.69279 -31.07324 -28.57860 -25.68239 -25.31310 -24.62266 -22.57696 -21.27555 -20.06721 -18.63602 -17.08781 -16.17656 -15.78804 -14.99959 -14.39985 -13.92599 -13.56142 -13.43794 -12.98392 -12.79223 -12.36848 -12.01745 -11.81473 -11.50981 -11.20638 -11.02698 -10.97333 -10.86003 -10.70765 -10.43990 -10.22640 -10.13925 -10.04439 -9.96727 -9.31485 -8.84550 -8.27925 -6.68260 -5.95234 -3.30241 3.52722 3.54252 3.69960 4.23160 4.63784 4.67696 4.70130 4.89799 4.93267 5.18981 5.21521 5.41261 5.50318 5.62813 5.72113 5.81309 5.88108 5.93208 5.95072 6.02500 6.13579 6.21353 6.33612 6.37475 6.50481 6.52955 6.65633 6.86055 6.94437 7.03764 7.15636 7.84109 8.21140 8.65310 9.23555 9.89512 10.40823 11.19885 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.007869 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.992824 B = 3557.461244 C = 3801.712855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.128 3.872 2 N -0.595 5.595 3 C -0.350 4.350 4 H 0.048 0.952 5 C -0.021 4.021 6 N -0.906 5.906 7 Si 1.063 2.937 8 H -0.291 1.291 9 H -0.293 1.293 10 H -0.289 1.289 11 C 0.139 3.861 12 C 0.064 3.936 13 H 0.077 0.923 14 C -0.148 4.148 15 C -0.129 4.129 16 C 0.082 3.918 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.130 4.130 20 O -0.351 6.351 21 H -0.006 1.006 22 H 0.033 0.967 23 H 0.033 0.967 24 H 0.268 0.732 25 H 0.029 0.971 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 -11.051 8.624 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.318 5.318 3 C -0.479 4.479 4 H 0.066 0.934 5 C -0.224 4.224 6 N -0.545 5.545 7 Si 0.893 3.107 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.216 1.216 11 C 0.012 3.988 12 C 0.005 3.995 13 H 0.095 0.905 14 C -0.187 4.187 15 C -0.167 4.167 16 C 0.042 3.958 17 C -0.187 4.187 18 C -0.177 4.177 19 C -0.167 4.167 20 O -0.270 6.270 21 H 0.012 0.988 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.525 -10.299 8.286 13.306 hybrid contribution -1.382 -0.636 0.296 1.550 sum -2.907 -10.935 8.582 14.201 Atomic orbital electron populations 1.21058 0.85590 0.98717 0.96366 1.43679 1.00137 1.01791 1.86211 1.19920 1.10657 0.92008 1.25356 0.93434 1.25939 1.01375 1.02078 0.92995 1.70715 1.37105 1.28438 1.18260 0.83579 0.76097 0.75711 0.75314 1.21682 1.22029 1.21611 1.21239 0.98465 0.87245 0.91864 1.23706 0.83228 0.94955 0.97625 0.90512 1.23187 1.00233 0.96766 0.98482 1.22895 0.94073 1.00200 0.99525 1.22982 0.93991 0.83970 0.94896 1.23325 1.00689 0.97945 0.96722 1.22722 1.01411 0.96463 0.97095 1.23038 1.00148 0.96647 0.96890 1.88399 1.37467 1.23880 1.77264 0.98798 0.94840 0.94817 0.92112 0.95216 0.89994 0.90888 0.90516 0.90635 0.90625 0.89541 0.91535 0.90359 0.91259 0.91341 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.06 10.58 59.85 0.63 3.70 16 2 N -0.60 -15.91 2.55 -181.11 -0.46 -16.37 16 3 C -0.35 -10.17 9.32 -15.06 -0.14 -10.31 16 4 H 0.05 1.42 7.96 -52.49 -0.42 1.00 16 5 C -0.02 -0.60 4.78 -17.43 -0.08 -0.68 16 6 N -0.91 -27.39 12.29 55.49 0.68 -26.70 16 7 Si 1.06 25.65 30.00 -169.99 -5.10 20.55 16 8 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 C 0.14 3.34 4.47 -4.04 -0.02 3.32 16 12 C 0.06 1.34 3.78 -25.97 -0.10 1.24 16 13 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 14 C -0.15 -2.44 6.57 -24.58 -0.16 -2.60 16 15 C -0.13 -1.80 6.21 -24.77 -0.15 -1.95 16 16 C 0.08 1.27 1.45 -90.19 -0.13 1.14 16 17 C -0.15 -2.05 7.58 -26.30 -0.20 -2.25 16 18 C -0.14 -1.55 7.90 -25.75 -0.20 -1.76 16 19 C -0.13 -1.68 7.64 -26.31 -0.20 -1.88 16 20 O -0.35 -7.06 9.68 -35.23 -0.34 -7.41 16 21 H -0.01 -0.14 8.14 -51.93 -0.42 -0.57 16 22 H 0.03 0.74 7.10 -51.93 -0.37 0.37 16 23 H 0.03 0.79 8.00 -51.93 -0.42 0.37 16 24 H 0.27 8.25 7.46 -40.82 -0.30 7.95 16 25 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 26 H 0.08 2.17 5.74 -51.93 -0.30 1.87 16 27 H 0.07 1.17 7.85 -51.93 -0.41 0.77 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 287.68 15.07 4.34 4.34 Total: -1.00 -31.09 287.68 -7.71 -38.80 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -6.07 Total: -1.15 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -0.76 Total: -12.05 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.22 Total: -43.08 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -0.34 Total: -7.41 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.10 Total: 20.55 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.09 -7.71 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712536083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds