Wall clock time and date at job start Mon Mar 30 2020 03:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 120.00168 * 2 1 4 4 H 1.08001 * 119.99420 * 38.96476 * 3 2 1 5 5 C 1.38813 * 119.99927 * 218.96400 * 3 2 1 6 6 N 1.31614 * 120.00235 * 27.07693 * 5 3 2 7 7 Si 1.86801 * 119.99400 * 207.07346 * 5 3 2 8 8 H 1.48489 * 109.47712 * 0.02562 * 7 5 3 9 9 H 1.48507 * 109.47002 * 239.99732 * 7 5 3 10 10 H 1.48506 * 109.46845 * 120.00512 * 7 5 3 11 11 C 1.46504 * 119.99817 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46961 * 269.99598 * 11 2 1 13 13 H 1.09003 * 109.82547 * 305.70206 * 12 11 2 14 14 C 1.54454 * 109.83211 * 184.81498 * 12 11 2 15 15 C 1.55615 * 102.28995 * 219.18365 * 14 12 11 16 16 C 1.54097 * 100.84551 * 33.10421 * 15 14 12 17 17 C 1.52883 * 115.01806 * 94.68320 * 16 15 14 18 18 C 1.53948 * 86.80968 * 91.88299 * 17 16 15 19 19 C 1.52860 * 115.04122 * 194.80199 * 16 15 14 20 20 O 1.42643 * 106.36039 * 324.77444 * 16 15 14 21 21 H 1.09000 * 109.47534 * 95.13049 * 1 2 3 22 22 H 1.09003 * 109.47232 * 215.12900 * 1 2 3 23 23 H 1.09004 * 109.47054 * 335.12203 * 1 2 3 24 24 H 0.97004 * 119.99930 * 6.08457 * 6 5 3 25 25 H 1.09000 * 109.47430 * 29.99434 * 11 2 1 26 26 H 1.09004 * 109.47150 * 150.00083 * 11 2 1 27 27 H 1.09002 * 110.82540 * 337.34544 * 14 12 11 28 28 H 1.09001 * 110.82954 * 100.91865 * 14 12 11 29 29 H 1.08999 * 111.08817 * 275.22286 * 15 14 12 30 30 H 1.08998 * 111.21038 * 151.03528 * 15 14 12 31 31 H 1.08997 * 113.65669 * 206.36706 * 17 16 15 32 32 H 1.09000 * 113.65687 * 337.40918 * 17 16 15 33 33 H 1.08994 * 113.58868 * 270.17223 * 18 17 16 34 34 H 1.09005 * 113.58515 * 139.34640 * 18 17 16 35 35 H 1.09001 * 113.66024 * 22.61899 * 19 16 15 36 36 H 1.09000 * 113.65780 * 153.65399 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7898 2.0171 0.5882 5 6 3.3062 1.3196 -0.7560 6 7 3.4742 0.5876 -1.8368 7 14 4.6241 2.5384 -0.2391 8 1 4.1970 3.2326 1.0022 9 1 4.8269 3.5362 -1.3201 10 1 5.8965 1.8149 0.0118 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9532 -0.9130 1.9901 14 6 3.3279 -2.9835 1.4527 15 6 2.6926 -3.8128 2.6060 16 6 1.2127 -3.4033 2.4764 17 6 0.3517 -4.3477 1.6372 18 6 0.0243 -5.0788 2.9518 19 6 0.3358 -3.7573 3.6774 20 8 1.2081 -2.0333 2.0794 21 1 -0.3634 -0.0919 -1.0235 22 1 -0.3634 -0.8405 0.5913 23 1 -0.3633 0.9323 0.4323 24 1 2.7547 0.0200 -2.1549 25 1 1.6083 -2.0282 -0.5146 26 1 3.1499 -1.1382 -0.5143 27 1 3.2500 -3.5156 0.5045 28 1 4.3660 -2.7378 1.6765 29 1 3.0995 -3.5160 3.5727 30 1 2.8207 -4.8823 2.4397 31 1 -0.5107 -3.8629 1.1797 32 1 0.9238 -4.9507 0.9321 33 1 0.7218 -5.8819 3.1896 34 1 -1.0186 -5.3853 3.0323 35 1 0.8951 -3.8883 4.6038 36 1 -0.5311 -3.1068 3.7929 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712536083.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:25 Heat of formation + Delta-G solvation = -29.988430 kcal Electronic energy + Delta-G solvation = -16521.835620 eV Core-core repulsion = 14006.277496 eV Total energy + Delta-G solvation = -2515.558124 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.41237 -38.23453 -36.70048 -33.27944 -33.03477 -30.18308 -27.43791 -26.71015 -26.19900 -23.85737 -22.93935 -21.82423 -19.82044 -19.20714 -17.55952 -17.05759 -16.32591 -16.06127 -15.83671 -15.36318 -15.28089 -14.49809 -14.26892 -13.77326 -13.32316 -13.22908 -13.00508 -12.83754 -12.75241 -12.62686 -12.36494 -12.07545 -11.90858 -11.89787 -11.81563 -11.45986 -11.40418 -11.12600 -10.48047 -10.28295 -8.88913 -8.18078 -5.57450 1.56169 1.63132 1.81951 2.62178 2.92132 3.13744 3.50148 3.65667 3.68003 3.74595 3.89416 3.99831 4.16033 4.23728 4.42755 4.52868 4.68123 4.70535 4.78934 4.82458 4.84614 4.89230 4.91448 4.96452 5.02199 5.06116 5.12237 5.16022 5.26217 5.40975 5.49144 5.89177 6.33546 6.42358 7.08423 7.72735 8.21459 8.89030 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041533 B = 0.007869 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.992824 B = 3557.461244 C = 3801.712855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.133 3.867 2 N -0.615 5.615 3 C -0.365 4.365 4 H 0.033 0.967 5 C -0.063 4.063 6 N -0.923 5.923 7 Si 1.114 2.886 8 H -0.278 1.278 9 H -0.286 1.286 10 H -0.279 1.279 11 C 0.145 3.855 12 C 0.073 3.927 13 H 0.047 0.953 14 C -0.144 4.144 15 C -0.116 4.116 16 C 0.057 3.943 17 C -0.155 4.155 18 C -0.119 4.119 19 C -0.129 4.129 20 O -0.377 6.377 21 H -0.007 1.007 22 H 0.047 0.953 23 H 0.031 0.969 24 H 0.253 0.747 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.326 -12.611 10.074 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.338 5.338 3 C -0.495 4.495 4 H 0.051 0.949 5 C -0.261 4.261 6 N -0.562 5.562 7 Si 0.937 3.063 8 H -0.203 1.203 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.019 3.981 12 C 0.013 3.987 13 H 0.065 0.935 14 C -0.183 4.183 15 C -0.153 4.153 16 C 0.018 3.982 17 C -0.192 4.192 18 C -0.156 4.156 19 C -0.166 4.166 20 O -0.297 6.297 21 H 0.011 0.989 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.027 -11.889 9.748 15.408 hybrid contribution -1.649 -0.173 -0.164 1.666 sum -2.676 -12.062 9.584 15.637 Atomic orbital electron populations 1.21035 0.84488 0.99202 0.96481 1.43942 1.01188 1.02097 1.86592 1.20053 1.11545 0.92746 1.25132 0.94903 1.27334 1.03279 1.03218 0.92309 1.70846 1.36490 1.29445 1.19459 0.82910 0.73860 0.73941 0.75555 1.20308 1.21259 1.20469 1.21175 0.96669 0.86242 0.94027 1.23291 0.84463 0.96331 0.94624 0.93527 1.23141 1.00021 0.95043 1.00050 1.22894 0.92206 1.01484 0.98703 1.23551 0.95825 0.82024 0.96816 1.23334 0.99844 0.98002 0.98061 1.22694 1.02983 0.95854 0.94051 1.23055 0.99313 0.97431 0.96817 1.88358 1.36965 1.27085 1.77290 0.98875 0.93467 0.94972 0.93795 0.95109 0.92713 0.90628 0.89588 0.89633 0.87488 0.91337 0.90869 0.87953 0.89852 0.89662 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.49 10.58 127.77 1.35 7.84 16 2 N -0.61 -33.72 2.55 -726.91 -1.85 -35.57 16 3 C -0.36 -21.72 9.32 84.03 0.78 -20.94 16 4 H 0.03 2.02 7.96 -2.91 -0.02 2.00 16 5 C -0.06 -3.69 4.78 84.86 0.41 -3.28 16 6 N -0.92 -56.78 12.29 21.65 0.27 -56.51 16 7 Si 1.11 51.86 30.00 68.60 2.06 53.92 16 8 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 9 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 11 C 0.15 7.16 4.47 86.38 0.39 7.54 16 12 C 0.07 3.04 3.78 31.09 0.12 3.16 16 13 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 14 C -0.14 -4.55 6.57 31.99 0.21 -4.34 16 15 C -0.12 -2.86 6.21 31.87 0.20 -2.66 16 16 C 0.06 1.66 1.45 -10.51 -0.02 1.65 16 17 C -0.15 -3.94 7.58 30.88 0.23 -3.71 16 18 C -0.12 -2.21 7.90 31.23 0.25 -1.96 16 19 C -0.13 -3.00 7.64 30.87 0.24 -2.77 16 20 O -0.38 -15.14 9.68 -148.98 -1.44 -16.58 16 21 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 22 H 0.05 2.13 7.10 -2.39 -0.02 2.11 16 23 H 0.03 1.53 8.00 -2.39 -0.02 1.51 16 24 H 0.25 16.02 7.46 -92.71 -0.69 15.33 16 25 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 26 H 0.05 3.00 5.74 -2.38 -0.01 2.98 16 27 H 0.08 2.33 7.85 -2.39 -0.02 2.32 16 28 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.11 2.01 8.04 -2.39 -0.02 1.99 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.74 8.11 -2.39 -0.02 1.72 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.03 287.68 4.29 -63.74 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 1.11 Total: 10.48 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 4.15 Total: -19.47 kcal Atomic # 7 Polarization: -90.50 SS G_CDS: -1.59 Total: -92.09 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.44 Total: -16.58 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.06 Total: 53.92 kcal Total: -68.03 4.29 -63.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712536083.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.750 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds