Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47106 * 2 1 4 4 C 1.52997 * 109.47071 * 119.99958 * 2 1 3 5 5 C 1.53002 * 109.47110 * 184.99834 * 4 2 1 6 6 C 1.54264 * 110.03274 * 292.17273 * 5 4 2 7 7 C 1.54892 * 104.19275 * 217.10248 * 6 5 4 8 8 C 1.54894 * 102.74882 * 37.94071 * 7 6 5 9 9 C 1.53873 * 110.03422 * 174.99907 * 5 4 2 10 10 N 1.46496 * 109.47004 * 240.00284 * 2 1 3 11 11 C 1.34777 * 120.00345 * 85.00252 * 10 2 1 12 12 O 1.21691 * 119.99927 * 359.71664 * 11 10 2 13 13 C 1.46376 * 120.00409 * 180.02562 * 11 10 2 14 14 H 1.08000 * 119.99344 * 359.71922 * 13 11 10 15 15 C 1.40047 * 119.99962 * 179.72389 * 13 11 10 16 16 N 1.30669 * 120.00136 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99668 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47477 * 89.99602 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99875 * 17 15 13 20 20 H 1.48499 * 109.47134 * 329.99497 * 17 15 13 21 21 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47148 * 299.99742 * 1 2 3 23 23 H 1.09003 * 109.46845 * 59.99780 * 1 2 3 24 24 H 1.09000 * 109.47462 * 305.00462 * 4 2 1 25 25 H 1.09008 * 109.46930 * 65.00352 * 4 2 1 26 26 H 1.09000 * 110.01080 * 53.61459 * 5 4 2 27 27 H 1.08998 * 110.48455 * 335.77626 * 6 5 4 28 28 H 1.08995 * 110.48639 * 98.42981 * 6 5 4 29 29 H 1.09002 * 110.75830 * 279.62892 * 7 6 5 30 30 H 1.09003 * 110.91541 * 156.32897 * 7 6 5 31 31 H 1.09001 * 110.48759 * 203.37661 * 8 7 6 32 32 H 1.08998 * 110.48721 * 80.73732 * 8 7 6 33 33 H 1.09000 * 110.03815 * 238.57357 * 9 5 4 34 34 H 1.09002 * 110.02812 * 359.95868 * 9 5 4 35 35 H 0.97004 * 120.00003 * 264.99474 * 10 2 1 36 36 H 0.96999 * 119.99949 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.2011 -1.4273 0.1681 7 6 5.4772 -2.0377 0.7992 8 6 5.0138 -2.3898 2.2346 9 6 4.0816 -1.2252 2.6275 10 7 2.0183 -0.6905 -1.1962 11 6 2.1471 -0.0182 -2.3571 12 8 1.8529 1.1613 -2.4130 13 6 2.6345 -0.7083 -3.5525 14 1 2.8952 -1.7552 -3.5029 15 6 2.7628 -0.0110 -4.7602 16 7 2.4469 1.2556 -4.8201 17 14 3.3854 -0.8915 -6.2854 18 1 2.2360 -1.4688 -7.0277 19 1 4.1025 0.0741 -7.1564 20 1 4.3128 -1.9799 -5.8847 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7517 -1.7716 1.2055 26 1 3.8682 0.4313 1.2437 27 1 3.5242 -2.2154 -0.1615 28 1 4.4623 -0.7743 -0.6646 29 1 6.2846 -1.3058 0.8226 30 1 5.7862 -2.9345 0.2621 31 1 5.8680 -2.4392 2.9099 32 1 4.4681 -3.3333 2.2387 33 1 4.6364 -0.4779 3.1948 34 1 3.2459 -1.5984 3.2196 35 1 2.2491 -1.6317 -1.1526 36 1 2.5355 1.7384 -5.6567 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712552184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -68.355677 kcal Electronic energy + Delta-G solvation = -16137.526155 eV Core-core repulsion = 13620.304302 eV Total energy + Delta-G solvation = -2517.221853 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78833 -36.95862 -34.36772 -32.35432 -30.56459 -29.07040 -28.30256 -26.01142 -24.64013 -21.12703 -20.44183 -19.53725 -19.00299 -17.01744 -15.69202 -15.34993 -14.92824 -14.49667 -14.02077 -13.36045 -13.07086 -12.84159 -12.55194 -12.28083 -11.88125 -11.62094 -11.53495 -11.03813 -10.98541 -10.92597 -10.64137 -10.56880 -10.40844 -10.31531 -10.24067 -10.12213 -10.03576 -9.85385 -8.80518 -7.52091 -7.33498 -6.12598 -4.57740 3.16432 3.23374 3.26523 4.14774 4.65405 4.80732 4.90271 4.92563 4.99400 5.37574 5.58658 5.65434 5.70736 5.84387 5.87100 5.94237 6.00346 6.02325 6.07035 6.14475 6.19145 6.25826 6.33952 6.42385 6.45452 6.52658 6.69932 6.81981 6.87569 6.97718 7.48405 8.02940 8.23585 8.41700 9.08516 9.64949 10.67051 10.87925 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.008073 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.350717 B = 3467.440092 C = 4187.404625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.123 4.123 9 C -0.121 4.121 10 N -0.759 5.759 11 C 0.557 3.443 12 O -0.582 6.582 13 C -0.546 4.546 14 H 0.065 0.935 15 C 0.088 3.912 16 N -0.769 5.769 17 Si 0.904 3.096 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.265 1.265 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.379 0.621 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -6.821 11.186 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.154 4.154 5 C -0.107 4.107 6 C -0.148 4.148 7 C -0.167 4.167 8 C -0.161 4.161 9 C -0.158 4.158 10 N -0.416 5.416 11 C 0.360 3.640 12 O -0.465 6.465 13 C -0.583 4.583 14 H 0.083 0.917 15 C -0.131 4.131 16 N -0.398 5.398 17 Si 0.729 3.271 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.190 1.190 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.212 0.788 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.656 -5.762 11.038 12.731 hybrid contribution 0.343 -0.885 -0.740 1.203 sum 2.999 -6.647 10.298 12.618 Atomic orbital electron populations 1.22186 0.97476 1.00750 1.01301 1.20495 0.92458 0.97395 0.85275 0.90921 1.21984 0.94957 1.00589 0.97847 1.21732 0.94954 0.99864 0.94136 1.22524 0.95378 0.99157 0.97735 1.22566 0.98414 1.00275 0.95444 1.22345 0.98575 0.98262 0.96925 1.22239 0.98690 0.97440 0.97478 1.46386 1.72891 1.12728 1.09566 1.18160 0.77742 0.86348 0.81726 1.90590 1.54706 1.16654 1.84582 1.20894 1.46921 0.97129 0.93392 0.91656 1.25682 0.93372 0.94412 0.99622 1.70023 1.35549 1.08246 1.26017 0.86442 0.79344 0.79813 0.81545 1.19839 1.20538 1.18959 0.93621 0.93575 0.92066 0.91886 0.92142 0.91319 0.91636 0.90424 0.92007 0.91993 0.92482 0.92026 0.92436 0.92140 0.78753 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.48 37.16 0.35 -2.51 16 2 C 0.15 2.87 2.57 -67.93 -0.17 2.70 16 3 H 0.07 1.60 7.58 -51.93 -0.39 1.21 16 4 C -0.12 -1.70 4.07 -26.73 -0.11 -1.81 16 5 C -0.09 -1.28 2.93 -89.50 -0.26 -1.55 16 6 C -0.11 -1.72 4.63 -25.07 -0.12 -1.83 16 7 C -0.13 -1.69 6.91 -24.73 -0.17 -1.86 16 8 C -0.12 -1.41 6.83 -25.07 -0.17 -1.58 16 9 C -0.12 -1.44 6.46 -25.62 -0.17 -1.61 16 10 N -0.76 -16.65 3.40 -55.22 -0.19 -16.83 16 11 C 0.56 15.66 7.71 -12.99 -0.10 15.56 16 12 O -0.58 -18.78 14.68 5.20 0.08 -18.71 16 13 C -0.55 -15.41 9.54 -35.63 -0.34 -15.75 16 14 H 0.07 1.70 7.85 -52.49 -0.41 1.28 16 15 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 16 N -0.77 -23.27 11.83 55.55 0.66 -22.62 16 17 Si 0.90 20.33 29.56 -169.99 -5.02 15.31 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.84 8.00 -51.92 -0.42 0.42 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.07 1.01 5.93 -51.93 -0.31 0.70 16 28 H 0.08 1.47 7.82 -51.93 -0.41 1.06 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.38 7.48 6.24 -40.82 -0.25 7.22 16 36 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 288.23 15.07 4.34 4.34 Total: -1.00 -32.58 288.23 -7.44 -40.02 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.95 Total: 6.34 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -1.35 Total: -7.85 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.47 Total: -39.45 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.71 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.58 -7.44 -40.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.338 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds