Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47106 * 2 1 4 4 C 1.52997 * 109.47071 * 119.99958 * 2 1 3 5 5 C 1.53002 * 109.47110 * 184.99834 * 4 2 1 6 6 C 1.54264 * 110.03274 * 292.17273 * 5 4 2 7 7 C 1.54892 * 104.19275 * 217.10248 * 6 5 4 8 8 C 1.54894 * 102.74882 * 37.94071 * 7 6 5 9 9 C 1.53873 * 110.03422 * 174.99907 * 5 4 2 10 10 N 1.46496 * 109.47004 * 240.00284 * 2 1 3 11 11 C 1.34777 * 120.00345 * 85.00252 * 10 2 1 12 12 O 1.21691 * 119.99927 * 359.71664 * 11 10 2 13 13 C 1.46376 * 120.00409 * 180.02562 * 11 10 2 14 14 H 1.08000 * 119.99344 * 359.71922 * 13 11 10 15 15 C 1.40047 * 119.99962 * 179.72389 * 13 11 10 16 16 N 1.30669 * 120.00136 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99668 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47477 * 89.99602 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99875 * 17 15 13 20 20 H 1.48499 * 109.47134 * 329.99497 * 17 15 13 21 21 H 1.09003 * 109.46853 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47148 * 299.99742 * 1 2 3 23 23 H 1.09003 * 109.46845 * 59.99780 * 1 2 3 24 24 H 1.09000 * 109.47462 * 305.00462 * 4 2 1 25 25 H 1.09008 * 109.46930 * 65.00352 * 4 2 1 26 26 H 1.09000 * 110.01080 * 53.61459 * 5 4 2 27 27 H 1.08998 * 110.48455 * 335.77626 * 6 5 4 28 28 H 1.08995 * 110.48639 * 98.42981 * 6 5 4 29 29 H 1.09002 * 110.75830 * 279.62892 * 7 6 5 30 30 H 1.09003 * 110.91541 * 156.32897 * 7 6 5 31 31 H 1.09001 * 110.48759 * 203.37661 * 8 7 6 32 32 H 1.08998 * 110.48721 * 80.73732 * 8 7 6 33 33 H 1.09000 * 110.03815 * 238.57357 * 9 5 4 34 34 H 1.09002 * 110.02812 * 359.95868 * 9 5 4 35 35 H 0.97004 * 120.00003 * 264.99474 * 10 2 1 36 36 H 0.96999 * 119.99949 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 6 4.2011 -1.4273 0.1681 7 6 5.4772 -2.0377 0.7992 8 6 5.0138 -2.3898 2.2346 9 6 4.0816 -1.2252 2.6275 10 7 2.0183 -0.6905 -1.1962 11 6 2.1471 -0.0182 -2.3571 12 8 1.8529 1.1613 -2.4130 13 6 2.6345 -0.7083 -3.5525 14 1 2.8952 -1.7552 -3.5029 15 6 2.7628 -0.0110 -4.7602 16 7 2.4469 1.2556 -4.8201 17 14 3.3854 -0.8915 -6.2854 18 1 2.2360 -1.4688 -7.0277 19 1 4.1025 0.0741 -7.1564 20 1 4.3128 -1.9799 -5.8847 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.6054 -0.2618 2.1370 25 1 1.7517 -1.7716 1.2055 26 1 3.8682 0.4313 1.2437 27 1 3.5242 -2.2154 -0.1615 28 1 4.4623 -0.7743 -0.6646 29 1 6.2846 -1.3058 0.8226 30 1 5.7862 -2.9345 0.2621 31 1 5.8680 -2.4392 2.9099 32 1 4.4681 -3.3333 2.2387 33 1 4.6364 -0.4779 3.1948 34 1 3.2459 -1.5984 3.2196 35 1 2.2491 -1.6317 -1.1526 36 1 2.5355 1.7384 -5.6567 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712552184.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -89.235104 kcal Electronic energy + Delta-G solvation = -16138.431555 eV Core-core repulsion = 13620.304302 eV Total energy + Delta-G solvation = -2518.127253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.25322 -38.69138 -36.08466 -34.52088 -32.27047 -30.44216 -29.42015 -28.13081 -25.89731 -22.89360 -21.63446 -21.03259 -20.43006 -19.00480 -17.44753 -17.02341 -16.23239 -15.93878 -15.80057 -14.86314 -14.55149 -14.28604 -14.13125 -13.93804 -13.49034 -13.22921 -12.86513 -12.77967 -12.70924 -12.58559 -12.02584 -11.95946 -11.88426 -11.76051 -11.50571 -11.39932 -11.27518 -11.13261 -10.91660 -9.77528 -9.28910 -8.25763 -6.81334 1.38651 1.40476 1.55128 2.25068 2.51999 3.22261 3.66473 3.72183 3.82386 3.86100 4.17670 4.40164 4.43882 4.61479 4.63792 4.72208 4.78201 4.83431 4.87516 4.93936 5.03473 5.09329 5.16717 5.19759 5.25652 5.31795 5.33891 5.45798 5.49326 5.56314 5.63286 5.93931 6.30681 6.43434 6.90238 7.65307 8.56240 8.74030 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.028266 B = 0.008073 C = 0.006685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.350717 B = 3467.440092 C = 4187.404625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.145 3.855 3 H 0.033 0.967 4 C -0.102 4.102 5 C -0.091 4.091 6 C -0.112 4.112 7 C -0.128 4.128 8 C -0.117 4.117 9 C -0.114 4.114 10 N -0.743 5.743 11 C 0.543 3.457 12 O -0.635 6.635 13 C -0.574 4.574 14 H 0.083 0.917 15 C 0.029 3.971 16 N -0.825 5.825 17 Si 0.993 3.007 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.249 1.249 21 H 0.065 0.935 22 H 0.078 0.922 23 H 0.016 0.984 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.392 0.608 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.353 -9.461 12.453 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.052 0.948 4 C -0.140 4.140 5 C -0.109 4.109 6 C -0.150 4.150 7 C -0.166 4.166 8 C -0.154 4.154 9 C -0.151 4.151 10 N -0.398 5.398 11 C 0.346 3.654 12 O -0.522 6.522 13 C -0.611 4.611 14 H 0.102 0.898 15 C -0.186 4.186 16 N -0.454 5.454 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.172 1.172 21 H 0.084 0.916 22 H 0.097 0.903 23 H 0.035 0.965 24 H 0.108 0.892 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.228 0.772 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.116 -8.450 12.358 15.292 hybrid contribution 0.186 -0.030 -1.073 1.090 sum 3.303 -8.480 11.285 14.497 Atomic orbital electron populations 1.22101 0.96294 1.01837 1.00718 1.20697 0.93390 0.95845 0.86144 0.94849 1.21913 0.94882 1.01206 0.95977 1.21732 0.95002 0.98595 0.95617 1.22454 0.97125 0.98554 0.96896 1.22553 0.96888 1.00248 0.96878 1.22331 0.99180 0.98403 0.95488 1.22188 0.99524 0.97694 0.95707 1.46048 1.71667 1.13084 1.09043 1.18495 0.77404 0.85927 0.83549 1.90543 1.56967 1.18890 1.85844 1.21426 1.47298 0.98155 0.94189 0.89843 1.26933 0.92875 0.95090 1.03688 1.70201 1.37107 1.10628 1.27501 0.85090 0.79067 0.78558 0.76013 1.18639 1.19907 1.17230 0.91571 0.90320 0.96489 0.89151 0.90106 0.93787 0.91496 0.95072 0.92476 0.91235 0.90698 0.90823 0.91739 0.90186 0.77245 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.48 71.98 0.68 -4.71 16 2 C 0.14 5.60 2.57 44.99 0.12 5.72 16 3 H 0.03 1.55 7.58 -2.39 -0.02 1.53 16 4 C -0.10 -2.78 4.07 30.59 0.12 -2.66 16 5 C -0.09 -2.55 2.93 -10.07 -0.03 -2.58 16 6 C -0.11 -3.48 4.63 31.67 0.15 -3.34 16 7 C -0.13 -3.15 6.91 31.89 0.22 -2.93 16 8 C -0.12 -2.25 6.83 31.67 0.22 -2.04 16 9 C -0.11 -2.34 6.46 31.32 0.20 -2.14 16 10 N -0.74 -33.42 3.40 -446.82 -1.52 -34.95 16 11 C 0.54 31.91 7.71 86.36 0.67 32.58 16 12 O -0.63 -43.47 14.68 -4.32 -0.06 -43.53 16 13 C -0.57 -33.14 9.54 24.83 0.24 -32.90 16 14 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 15 C 0.03 1.64 5.50 85.30 0.47 2.11 16 16 N -0.82 -51.80 11.83 21.83 0.26 -51.54 16 17 Si 0.99 41.95 29.56 68.60 2.03 43.98 16 18 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 21 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 22 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 23 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 25 H 0.08 1.94 8.00 -2.38 -0.02 1.92 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.07 2.00 5.93 -2.39 -0.01 1.99 16 28 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 35 H 0.39 15.46 6.24 -92.71 -0.58 14.89 16 36 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -75.40 288.23 4.22 -71.18 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 0.47 Total: 27.74 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 3.05 Total: -12.88 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.26 Total: -86.48 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.06 Total: -43.53 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -75.40 4.22 -71.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712552184.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.057 kcal (2) G-P(sol) polarization free energy of solvation -75.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds