Wall clock time and date at job start Mon Mar 30 2020 03:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36934 * 120.00730 * 2 1 4 4 H 1.07995 * 120.00394 * 159.38934 * 3 2 1 5 5 C 1.38812 * 119.99309 * 339.11526 * 3 2 1 6 6 N 1.31618 * 120.00641 * 348.35977 * 5 3 2 7 7 Si 1.86810 * 119.99538 * 168.35940 * 5 3 2 8 8 H 1.48494 * 109.47055 * 60.00114 * 7 5 3 9 9 H 1.48500 * 109.46768 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46835 * 299.99812 * 7 5 3 11 11 C 1.46507 * 119.99868 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46978 * 270.00572 * 11 2 1 13 13 H 1.08994 * 110.28014 * 60.63399 * 12 11 2 14 14 C 1.54956 * 110.30604 * 182.83261 * 12 11 2 15 15 C 1.55308 * 100.93808 * 155.35724 * 14 12 11 16 16 C 1.54381 * 102.25649 * 325.86615 * 15 14 12 17 17 H 1.09002 * 109.82896 * 261.84495 * 16 15 14 18 18 C 1.52989 * 109.90702 * 140.91607 * 16 15 14 19 19 C 1.53008 * 117.49997 * 248.98726 * 18 16 15 20 20 C 1.53003 * 59.99910 * 252.51140 * 19 18 16 21 21 O 1.43235 * 107.58780 * 21.35660 * 16 15 14 22 22 H 1.09001 * 109.47167 * 84.89584 * 1 2 3 23 23 H 1.08995 * 109.47401 * 204.89578 * 1 2 3 24 24 H 1.09001 * 109.46818 * 324.90304 * 1 2 3 25 25 H 0.96998 * 120.00134 * 179.97438 * 6 5 3 26 26 H 1.08997 * 109.46839 * 29.99960 * 11 2 1 27 27 H 1.08991 * 109.47499 * 150.00080 * 11 2 1 28 28 H 1.08995 * 111.12108 * 273.27065 * 14 12 11 29 29 H 1.08995 * 111.12297 * 37.43899 * 14 12 11 30 30 H 1.09002 * 110.84678 * 207.67323 * 15 14 12 31 31 H 1.09005 * 111.02236 * 84.13983 * 15 14 12 32 32 H 1.09003 * 115.55357 * 34.69326 * 18 16 15 33 33 H 1.09007 * 117.49425 * 0.02562 * 19 18 16 34 34 H 1.08998 * 117.49794 * 145.01710 * 19 18 16 35 35 H 1.08997 * 117.49584 * 252.50901 * 20 19 18 36 36 H 1.08995 * 117.51833 * 107.48420 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1779 1.2157 0.3292 5 6 1.5241 2.3484 -0.4286 6 7 0.3634 2.2823 -1.0456 7 14 2.3297 4.0072 -0.1295 8 1 3.6532 4.0431 -0.8020 9 1 1.4657 5.0831 -0.6783 10 1 2.5101 4.2139 1.3299 11 6 2.1975 -1.2688 0.0006 12 6 2.4523 -1.7099 1.4433 13 1 1.5072 -1.8548 1.9665 14 6 3.2883 -3.0143 1.4671 15 6 3.9519 -2.9136 2.8676 16 6 4.1643 -1.3921 3.0209 17 1 5.1908 -1.1340 2.7606 18 6 3.8720 -0.9679 4.4615 19 6 2.6286 -0.1107 4.7071 20 6 4.0212 0.5155 4.8052 21 8 3.2569 -0.7363 2.1276 22 1 -0.3633 0.0914 -1.0236 23 1 -0.3634 -0.9321 0.4326 24 1 -0.3633 0.8408 0.5909 25 1 -0.0739 3.0948 -1.3447 26 1 1.6083 -2.0286 -0.5129 27 1 3.1498 -1.1388 -0.5133 28 1 2.6471 -3.8931 1.3985 29 1 4.0383 -3.0147 0.6761 30 1 4.9052 -3.4419 2.8841 31 1 3.2869 -3.2926 3.6436 32 1 4.1440 -1.6922 5.2293 33 1 2.0187 0.1506 3.8423 34 1 2.0823 -0.2712 5.6365 35 1 4.3909 0.7671 5.7992 36 1 4.3279 1.1892 4.0051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715408455.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:29 Heat of formation + Delta-G solvation = 1.307991 kcal Electronic energy + Delta-G solvation = -16414.691395 eV Core-core repulsion = 13900.490385 eV Total energy + Delta-G solvation = -2514.201009 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.39864 -36.28960 -34.97452 -31.73340 -31.32617 -29.10603 -25.85701 -25.39282 -22.47876 -22.03895 -21.11198 -20.40279 -19.36575 -16.86874 -16.19078 -15.48781 -14.82284 -14.71937 -14.37762 -13.57706 -13.05396 -12.79821 -12.71956 -12.23984 -11.77658 -11.38174 -11.25159 -11.11841 -10.94442 -10.78456 -10.66532 -10.54251 -10.43839 -10.13734 -9.92303 -9.81352 -9.68013 -9.61721 -8.87692 -8.34985 -6.58586 -5.54177 -2.97071 3.50698 3.54821 3.57908 4.09521 4.30636 4.66128 4.83188 4.93722 5.13955 5.28176 5.32713 5.42416 5.58953 5.64018 5.73955 5.82464 5.84681 5.97864 5.99069 6.07447 6.19480 6.24625 6.37566 6.39998 6.46337 6.59781 6.72492 6.83910 6.94903 7.52798 7.81346 7.85929 8.04662 8.57756 9.42949 10.05293 10.53017 11.51732 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.025130 B = 0.009886 C = 0.007967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.950245 B = 2831.716968 C = 3513.869732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.597 5.597 3 C -0.227 4.227 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.919 5.919 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.293 1.293 10 H -0.286 1.286 11 C 0.153 3.847 12 C 0.063 3.937 13 H 0.056 0.944 14 C -0.152 4.152 15 C -0.145 4.145 16 C 0.102 3.898 17 H 0.073 0.927 18 C -0.173 4.173 19 C -0.165 4.165 20 C -0.176 4.176 21 O -0.339 6.339 22 H 0.028 0.972 23 H -0.008 1.008 24 H 0.044 0.956 25 H 0.249 0.751 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -9.941 8.754 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.319 5.319 3 C -0.357 4.357 4 H 0.090 0.910 5 C -0.205 4.205 6 N -0.566 5.566 7 Si 0.734 3.266 8 H -0.212 1.212 9 H -0.219 1.219 10 H -0.212 1.212 11 C 0.024 3.976 12 C 0.002 3.998 13 H 0.074 0.926 14 C -0.191 4.191 15 C -0.183 4.183 16 C 0.044 3.956 17 H 0.091 0.909 18 C -0.192 4.192 19 C -0.202 4.202 20 C -0.213 4.213 21 O -0.258 6.258 22 H 0.046 0.954 23 H 0.010 0.990 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.575 -9.552 8.634 14.031 hybrid contribution 0.393 0.691 0.381 0.881 sum 5.969 -8.861 9.015 13.979 Atomic orbital electron populations 1.20798 0.82734 0.95179 0.99266 1.43824 1.01669 1.00676 1.85713 1.19223 0.96907 0.84895 1.34664 0.91012 1.24960 0.97767 0.98248 0.99488 1.70069 1.17379 1.26502 1.42655 0.86342 0.78303 0.84074 0.77902 1.21205 1.21950 1.21226 1.20888 0.96477 0.89006 0.91184 1.23963 0.92817 0.85945 0.97048 0.92623 1.23305 0.99835 0.99160 0.96768 1.23081 1.01106 0.96327 0.97799 1.22137 0.94248 0.90973 0.88262 0.90899 1.22740 1.04977 0.94016 0.97430 1.22901 0.91041 1.03179 1.03080 1.22863 1.01053 0.95360 1.01979 1.88691 1.50882 1.30509 1.55732 0.95371 0.98961 0.93711 0.94072 0.93451 0.93049 0.90764 0.90630 0.90944 0.90966 0.88144 0.86880 0.89975 0.89745 0.88423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.23 8.96 59.85 0.54 4.77 16 2 N -0.60 -15.58 2.89 -181.13 -0.52 -16.10 16 3 C -0.23 -6.51 9.17 -15.06 -0.14 -6.65 16 4 H 0.07 2.07 7.65 -52.49 -0.40 1.67 16 5 C -0.01 -0.25 5.13 -17.43 -0.09 -0.34 16 6 N -0.92 -27.86 10.51 55.49 0.58 -27.27 16 7 Si 0.90 23.09 29.57 -169.99 -5.03 18.06 16 8 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 9 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 11 C 0.15 3.22 5.42 -4.04 -0.02 3.20 16 12 C 0.06 1.15 3.71 -25.70 -0.10 1.05 16 13 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.15 -2.10 6.57 -24.47 -0.16 -2.26 16 15 C -0.15 -1.84 6.54 -24.78 -0.16 -2.00 16 16 C 0.10 1.58 3.88 -26.01 -0.10 1.48 16 17 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 18 C -0.17 -2.48 5.56 -90.62 -0.50 -2.98 16 19 C -0.17 -2.61 9.88 -26.73 -0.26 -2.87 16 20 C -0.18 -2.62 10.21 -26.73 -0.27 -2.89 16 21 O -0.34 -6.73 8.31 -35.23 -0.29 -7.03 16 22 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 23 H -0.01 -0.18 8.03 -51.93 -0.42 -0.60 16 24 H 0.04 1.24 7.15 -51.93 -0.37 0.87 16 25 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.05 1.10 8.04 -51.93 -0.42 0.69 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 32 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 33 H 0.11 2.19 7.07 -51.93 -0.37 1.82 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -31.06 290.38 -8.28 -39.34 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -6.12 Total: -1.87 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -1.27 Total: -9.51 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.06 Total: -43.38 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.29 Total: -7.03 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.03 Total: 18.06 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.06 -8.28 -39.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715408455.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.647 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds