Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36945 * 120.00302 * 2 1 4 4 H 1.07999 * 120.00139 * 200.34203 * 3 2 1 5 5 C 1.38814 * 119.99761 * 20.34105 * 3 2 1 6 6 N 1.31624 * 119.99967 * 14.99921 * 5 3 2 7 7 Si 1.86798 * 119.99881 * 195.00305 * 5 3 2 8 8 H 1.48496 * 109.47413 * 85.00109 * 7 5 3 9 9 H 1.48504 * 109.46871 * 205.00079 * 7 5 3 10 10 H 1.48498 * 109.47003 * 324.99775 * 7 5 3 11 11 C 1.46502 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47077 * 270.00240 * 11 2 1 13 13 H 1.08998 * 110.42235 * 57.68842 * 12 11 2 14 14 C 1.54490 * 110.36938 * 179.97438 * 12 11 2 15 15 C 1.54505 * 104.06037 * 142.80890 * 14 12 11 16 16 C 1.54480 * 104.06868 * 359.97438 * 15 14 12 17 17 H 1.09007 * 110.36913 * 94.84827 * 16 15 14 18 18 C 1.52997 * 110.37715 * 217.19206 * 16 15 14 19 19 C 1.52999 * 117.49848 * 248.62181 * 18 16 15 20 20 C 1.52995 * 117.49752 * 180.02562 * 18 16 15 21 21 O 1.44420 * 110.37139 * 295.37404 * 12 11 2 22 22 H 1.09004 * 109.46962 * 275.09699 * 1 2 3 23 23 H 1.08998 * 109.46721 * 35.09165 * 1 2 3 24 24 H 1.08993 * 109.47051 * 155.09690 * 1 2 3 25 25 H 0.96996 * 119.99732 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.47244 * 149.99858 * 11 2 1 27 27 H 1.09003 * 109.46637 * 29.99772 * 11 2 1 28 28 H 1.09000 * 110.51281 * 24.16406 * 14 12 11 29 29 H 1.08996 * 110.62442 * 261.51066 * 14 12 11 30 30 H 1.09003 * 110.51482 * 118.64290 * 15 14 12 31 31 H 1.09005 * 110.51078 * 241.35239 * 15 14 12 32 32 H 1.08997 * 115.54740 * 34.32840 * 18 16 15 33 33 H 1.08998 * 117.50087 * 359.97438 * 19 18 16 34 34 H 1.09003 * 117.49998 * 145.02070 * 19 18 16 35 35 H 1.09002 * 117.49667 * 214.97746 * 20 18 16 36 36 H 1.08996 * 117.50137 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1792 1.2151 -0.3251 5 6 1.5206 2.3506 0.4179 6 7 0.3873 2.2838 1.0840 7 14 2.2823 4.0127 0.0348 8 1 1.8683 4.4456 -1.3239 9 1 1.8219 5.0102 1.0340 10 1 3.7623 3.9035 0.0901 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4432 13 1 1.5108 -1.8052 1.9838 14 6 3.2243 -3.0478 1.4681 15 6 4.1874 -2.9034 2.6676 16 6 3.8841 -1.4950 3.2253 17 1 3.1617 -1.5568 4.0393 18 6 5.1723 -0.8229 3.7044 19 6 5.3377 -0.6049 5.2097 20 6 5.0583 0.5855 4.2909 21 8 3.3221 -0.7692 2.1102 22 1 -0.3633 0.0913 1.0236 23 1 -0.3633 0.8409 -0.5908 24 1 -0.3633 -0.9321 -0.4327 25 1 -0.0524 3.0977 1.3756 26 1 3.1499 -1.1386 -0.5133 27 1 1.6084 -2.0286 -0.5129 28 1 3.7844 -3.1829 0.5428 29 1 2.5410 -3.8823 1.6251 30 1 3.9787 -3.6651 3.4189 31 1 5.2236 -2.9671 2.3353 32 1 6.0673 -1.0575 3.1281 33 1 4.5286 -0.9399 5.8587 34 1 6.3417 -0.6961 5.6241 35 1 5.8785 1.2778 4.1006 36 1 4.0656 1.0335 4.3351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715408456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = 1.783065 kcal Electronic energy + Delta-G solvation = -16283.727211 eV Core-core repulsion = 13769.546802 eV Total energy + Delta-G solvation = -2514.180409 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13689 -36.52607 -35.04715 -31.60033 -31.21983 -29.03972 -25.83479 -25.31744 -22.49043 -22.12701 -20.87263 -20.24607 -19.83073 -16.66453 -16.05401 -15.41875 -14.96780 -14.51903 -14.22196 -13.47004 -13.33568 -13.00839 -12.82417 -12.07568 -11.63623 -11.33317 -11.27181 -11.12675 -10.92278 -10.78104 -10.61144 -10.48300 -10.25916 -10.17953 -9.97117 -9.83670 -9.73713 -9.57601 -8.93492 -8.34860 -6.61547 -5.53983 -2.95318 3.50375 3.55633 3.57781 3.90153 4.61664 4.68116 4.81528 5.03122 5.18721 5.28484 5.32080 5.39465 5.63235 5.71884 5.73545 5.80075 5.85268 5.95340 6.07085 6.09722 6.21441 6.30205 6.31653 6.41110 6.49223 6.54027 6.57880 6.80269 6.95518 7.47227 7.73950 7.83278 8.00720 8.56473 9.41679 10.04285 10.51768 11.52779 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.010131 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.933668 B = 2763.041344 C = 3638.040497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.597 5.597 3 C -0.228 4.228 4 H 0.068 0.932 5 C -0.003 4.003 6 N -0.913 5.913 7 Si 0.900 3.100 8 H -0.291 1.291 9 H -0.294 1.294 10 H -0.281 1.281 11 C 0.157 3.843 12 C 0.056 3.944 13 H 0.054 0.946 14 C -0.153 4.153 15 C -0.144 4.144 16 C 0.096 3.904 17 H 0.057 0.943 18 C -0.143 4.143 19 C -0.182 4.182 20 C -0.163 4.163 21 O -0.325 6.325 22 H 0.028 0.972 23 H 0.043 0.957 24 H -0.004 1.004 25 H 0.248 0.752 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.867 -9.761 4.436 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.319 5.319 3 C -0.358 4.358 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.559 5.559 7 Si 0.731 3.269 8 H -0.218 1.218 9 H -0.220 1.220 10 H -0.206 1.206 11 C 0.029 3.971 12 C -0.005 4.005 13 H 0.072 0.928 14 C -0.192 4.192 15 C -0.182 4.182 16 C 0.038 3.962 17 H 0.075 0.925 18 C -0.162 4.162 19 C -0.219 4.219 20 C -0.200 4.200 21 O -0.243 6.243 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.014 0.986 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.785 -9.374 4.412 12.384 hybrid contribution 0.319 0.696 0.150 0.780 sum 7.104 -8.678 4.562 12.107 Atomic orbital electron populations 1.20803 0.82659 0.95332 0.99389 1.43988 1.01750 1.00749 1.85367 1.19139 0.96509 0.84503 1.35641 0.91389 1.24891 0.98021 0.98086 0.98951 1.70086 1.19096 1.26274 1.40494 0.86312 0.78715 0.84497 0.77331 1.21830 1.22004 1.20645 1.20975 0.96242 0.88725 0.91198 1.23954 0.92311 0.86154 0.98107 0.92757 1.23045 0.98476 0.99140 0.98523 1.22925 1.00187 0.97377 0.97747 1.22419 0.92539 0.89999 0.91245 0.92515 1.22189 0.98330 1.00501 0.95136 1.22956 1.02306 1.04284 0.92346 1.22827 1.03661 0.90912 1.02620 1.89468 1.60920 1.33555 1.40351 0.95405 0.93780 0.98595 0.94162 0.93156 0.93214 0.91075 0.91560 0.91521 0.91183 0.87828 0.89045 0.89018 0.89037 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 9.02 59.85 0.54 4.70 16 2 N -0.60 -15.68 2.91 -181.12 -0.53 -16.21 16 3 C -0.23 -6.59 9.23 -15.06 -0.14 -6.72 16 4 H 0.07 1.97 7.86 -52.49 -0.41 1.56 16 5 C 0.00 -0.08 5.06 -17.43 -0.09 -0.17 16 6 N -0.91 -27.78 10.67 55.49 0.59 -27.19 16 7 Si 0.90 23.05 29.58 -169.99 -5.03 18.02 16 8 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 9 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.16 3.35 5.36 -4.04 -0.02 3.33 16 12 C 0.06 1.11 3.54 -25.95 -0.09 1.02 16 13 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.15 -2.30 6.63 -25.16 -0.17 -2.47 16 15 C -0.14 -2.04 6.63 -25.16 -0.17 -2.21 16 16 C 0.10 1.65 3.44 -25.96 -0.09 1.56 16 17 H 0.06 0.98 7.98 -51.92 -0.41 0.57 16 18 C -0.14 -2.21 5.42 -90.62 -0.49 -2.70 16 19 C -0.18 -2.36 10.19 -26.76 -0.27 -2.63 16 20 C -0.16 -2.58 10.24 -26.76 -0.27 -2.86 16 21 O -0.32 -7.21 10.56 -35.23 -0.37 -7.58 16 22 H 0.03 0.77 7.40 -51.93 -0.38 0.38 16 23 H 0.04 1.20 7.21 -51.93 -0.37 0.83 16 24 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 25 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 27 H 0.05 0.93 7.86 -51.93 -0.41 0.53 16 28 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 32 H 0.10 1.50 7.87 -51.93 -0.41 1.09 16 33 H 0.09 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 LS Contribution 292.65 15.07 4.41 4.41 Total: -1.00 -31.76 292.65 -8.31 -40.07 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -6.13 Total: -2.39 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.26 Total: -9.13 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.06 Total: -43.40 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.37 Total: -7.58 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.03 Total: 18.02 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.76 -8.31 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715408456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.853 kcal (2) G-P(sol) polarization free energy of solvation -31.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds