Wall clock time and date at job start Mon Mar 30 2020 03:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36945 * 120.00302 * 2 1 4 4 H 1.07999 * 120.00139 * 200.34203 * 3 2 1 5 5 C 1.38814 * 119.99761 * 20.34105 * 3 2 1 6 6 N 1.31624 * 119.99967 * 14.99921 * 5 3 2 7 7 Si 1.86798 * 119.99881 * 195.00305 * 5 3 2 8 8 H 1.48496 * 109.47413 * 85.00109 * 7 5 3 9 9 H 1.48504 * 109.46871 * 205.00079 * 7 5 3 10 10 H 1.48498 * 109.47003 * 324.99775 * 7 5 3 11 11 C 1.46502 * 120.00252 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47077 * 270.00240 * 11 2 1 13 13 H 1.08998 * 110.42235 * 57.68842 * 12 11 2 14 14 C 1.54490 * 110.36938 * 179.97438 * 12 11 2 15 15 C 1.54505 * 104.06037 * 142.80890 * 14 12 11 16 16 C 1.54480 * 104.06868 * 359.97438 * 15 14 12 17 17 H 1.09007 * 110.36913 * 94.84827 * 16 15 14 18 18 C 1.52997 * 110.37715 * 217.19206 * 16 15 14 19 19 C 1.52999 * 117.49848 * 248.62181 * 18 16 15 20 20 C 1.52995 * 117.49752 * 180.02562 * 18 16 15 21 21 O 1.44420 * 110.37139 * 295.37404 * 12 11 2 22 22 H 1.09004 * 109.46962 * 275.09699 * 1 2 3 23 23 H 1.08998 * 109.46721 * 35.09165 * 1 2 3 24 24 H 1.08993 * 109.47051 * 155.09690 * 1 2 3 25 25 H 0.96996 * 119.99732 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.47244 * 149.99858 * 11 2 1 27 27 H 1.09003 * 109.46637 * 29.99772 * 11 2 1 28 28 H 1.09000 * 110.51281 * 24.16406 * 14 12 11 29 29 H 1.08996 * 110.62442 * 261.51066 * 14 12 11 30 30 H 1.09003 * 110.51482 * 118.64290 * 15 14 12 31 31 H 1.09005 * 110.51078 * 241.35239 * 15 14 12 32 32 H 1.08997 * 115.54740 * 34.32840 * 18 16 15 33 33 H 1.08998 * 117.50087 * 359.97438 * 19 18 16 34 34 H 1.09003 * 117.49998 * 145.02070 * 19 18 16 35 35 H 1.09002 * 117.49667 * 214.97746 * 20 18 16 36 36 H 1.08996 * 117.50137 * 359.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1792 1.2151 -0.3251 5 6 1.5206 2.3506 0.4179 6 7 0.3873 2.2838 1.0840 7 14 2.2823 4.0127 0.0348 8 1 1.8683 4.4456 -1.3239 9 1 1.8219 5.0102 1.0340 10 1 3.7623 3.9035 0.0901 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7097 1.4432 13 1 1.5108 -1.8052 1.9838 14 6 3.2243 -3.0478 1.4681 15 6 4.1874 -2.9034 2.6676 16 6 3.8841 -1.4950 3.2253 17 1 3.1617 -1.5568 4.0393 18 6 5.1723 -0.8229 3.7044 19 6 5.3377 -0.6049 5.2097 20 6 5.0583 0.5855 4.2909 21 8 3.3221 -0.7692 2.1102 22 1 -0.3633 0.0913 1.0236 23 1 -0.3633 0.8409 -0.5908 24 1 -0.3633 -0.9321 -0.4327 25 1 -0.0524 3.0977 1.3756 26 1 3.1499 -1.1386 -0.5133 27 1 1.6084 -2.0286 -0.5129 28 1 3.7844 -3.1829 0.5428 29 1 2.5410 -3.8823 1.6251 30 1 3.9787 -3.6651 3.4189 31 1 5.2236 -2.9671 2.3353 32 1 6.0673 -1.0575 3.1281 33 1 4.5286 -0.9399 5.8587 34 1 6.3417 -0.6961 5.6241 35 1 5.8785 1.2778 4.1006 36 1 4.0656 1.0335 4.3351 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715408456.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:30 Heat of formation + Delta-G solvation = -17.497582 kcal Electronic energy + Delta-G solvation = -16284.563283 eV Core-core repulsion = 13769.546802 eV Total energy + Delta-G solvation = -2515.016480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.53257 -37.91531 -36.90350 -33.45182 -32.77271 -30.69374 -27.91009 -27.01182 -24.12512 -23.27538 -22.37581 -21.75361 -21.22874 -18.76185 -17.36466 -17.02773 -16.62878 -16.23228 -15.48482 -15.39901 -14.98056 -14.67902 -14.35672 -13.82457 -13.26736 -12.89229 -12.71872 -12.57955 -12.53766 -12.42879 -12.36722 -12.16499 -12.03044 -11.84029 -11.65072 -11.44674 -11.19251 -10.92283 -10.60976 -10.41337 -8.74461 -7.76250 -5.19218 1.44246 1.45899 1.53994 2.54968 2.67849 3.34109 3.39022 3.58088 3.79585 3.82933 4.01395 4.12848 4.16451 4.20305 4.37512 4.48061 4.61831 4.75057 4.76158 4.79694 4.88425 4.91960 4.96669 5.01647 5.12857 5.21332 5.23735 5.32439 5.33993 5.36110 5.66212 5.74737 6.27820 6.42012 7.22311 7.93900 8.35000 9.28674 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.010131 C = 0.007695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.933668 B = 2763.041344 C = 3638.040497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.615 5.615 3 C -0.230 4.230 4 H 0.062 0.938 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.961 3.039 8 H -0.284 1.284 9 H -0.297 1.297 10 H -0.274 1.274 11 C 0.152 3.848 12 C 0.053 3.947 13 H 0.032 0.968 14 C -0.141 4.141 15 C -0.134 4.134 16 C 0.086 3.914 17 H 0.046 0.954 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.192 4.192 21 O -0.373 6.373 22 H -0.002 1.002 23 H 0.017 0.983 24 H 0.036 0.964 25 H 0.243 0.757 26 H 0.049 0.951 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -11.645 4.549 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.337 5.337 3 C -0.360 4.360 4 H 0.080 0.920 5 C -0.253 4.253 6 N -0.591 5.591 7 Si 0.790 3.210 8 H -0.210 1.210 9 H -0.224 1.224 10 H -0.200 1.200 11 C 0.025 3.975 12 C -0.007 4.007 13 H 0.050 0.950 14 C -0.179 4.179 15 C -0.171 4.171 16 C 0.028 3.972 17 H 0.064 0.936 18 C -0.172 4.172 19 C -0.183 4.183 20 C -0.229 4.229 21 O -0.292 6.292 22 H 0.016 0.984 23 H 0.036 0.964 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.558 -11.297 4.517 14.875 hybrid contribution -0.219 1.227 0.120 1.252 sum 8.339 -10.070 4.637 13.873 Atomic orbital electron populations 1.20547 0.82700 0.96155 0.97390 1.44220 1.02111 1.01849 1.85531 1.19326 0.96282 0.85906 1.34534 0.91997 1.25619 0.98847 1.01320 0.99519 1.70256 1.20450 1.26515 1.41928 0.85354 0.78139 0.80418 0.77050 1.21046 1.22419 1.19951 1.21194 0.96114 0.87459 0.92685 1.23786 0.92162 0.88591 0.96166 0.95024 1.22968 0.98584 0.96698 0.99687 1.22899 1.00753 0.95699 0.97775 1.22654 0.92845 0.91842 0.89851 0.93618 1.22297 0.97971 0.99644 0.97272 1.23051 1.04122 1.00284 0.90820 1.22778 1.02124 0.91995 1.05980 1.89416 1.61542 1.36080 1.42164 0.98410 0.96440 0.94602 0.94808 0.93291 0.90207 0.89822 0.89066 0.88887 0.89685 0.86558 0.88523 0.85892 0.88161 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.18 9.02 127.77 1.15 10.33 16 2 N -0.61 -32.58 2.91 -726.94 -2.12 -34.70 16 3 C -0.23 -13.50 9.23 84.03 0.78 -12.72 16 4 H 0.06 3.64 7.86 -2.91 -0.02 3.62 16 5 C -0.06 -3.57 5.06 84.86 0.43 -3.14 16 6 N -0.94 -59.31 10.67 21.65 0.23 -59.08 16 7 Si 0.96 48.42 29.58 68.60 2.03 50.44 16 8 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 9 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 10 H -0.27 -13.36 7.11 99.48 0.71 -12.66 16 11 C 0.15 6.35 5.36 86.38 0.46 6.81 16 12 C 0.05 2.08 3.54 31.10 0.11 2.19 16 13 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 14 C -0.14 -3.80 6.63 31.61 0.21 -3.59 16 15 C -0.13 -3.33 6.63 31.61 0.21 -3.12 16 16 C 0.09 2.86 3.44 31.10 0.11 2.97 16 17 H 0.05 1.58 7.98 -2.38 -0.02 1.56 16 18 C -0.15 -4.51 5.42 -10.80 -0.06 -4.57 16 19 C -0.15 -3.44 10.19 30.58 0.31 -3.13 16 20 C -0.19 -6.07 10.24 30.57 0.31 -5.76 16 21 O -0.37 -16.70 10.56 -148.98 -1.57 -18.28 16 22 H 0.00 -0.14 7.40 -2.39 -0.02 -0.16 16 23 H 0.02 0.96 7.21 -2.39 -0.02 0.94 16 24 H 0.04 1.53 7.83 -2.39 -0.02 1.51 16 25 H 0.24 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.05 2.05 8.03 -2.39 -0.02 2.03 16 27 H 0.08 2.81 7.86 -2.39 -0.02 2.79 16 28 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.89 7.69 -2.38 -0.02 1.87 16 32 H 0.12 3.08 7.87 -2.39 -0.02 3.07 16 33 H 0.10 2.18 8.09 -2.39 -0.02 2.16 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -70.81 292.65 3.62 -67.19 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.02 Total: 8.13 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 4.02 Total: -13.71 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -1.89 Total: -93.77 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.57 Total: -18.28 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.03 Total: 50.44 kcal Total: -70.81 3.62 -67.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715408456.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.696 kcal (2) G-P(sol) polarization free energy of solvation -70.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds