Wall clock time and date at job start Mon Mar 30 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46635 * 2 1 4 4 C 1.46894 * 110.99916 * 199.94685 * 3 2 1 5 5 C 1.50705 * 109.46792 * 72.20151 * 4 3 2 6 6 H 1.07998 * 119.99994 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99868 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99610 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00033 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47085 * 89.99306 * 9 7 5 11 11 H 1.48498 * 109.46945 * 209.99100 * 9 7 5 12 12 H 1.48492 * 109.47123 * 329.99634 * 9 7 5 13 13 C 1.46904 * 110.99840 * 75.99860 * 3 2 1 14 14 C 1.53003 * 109.47183 * 200.17147 * 13 3 2 15 15 C 1.55597 * 119.36902 * 69.05962 * 14 13 3 16 16 C 1.56038 * 80.83952 * 161.75428 * 15 14 13 17 17 C 1.54830 * 119.62370 * 166.64908 * 14 13 3 18 18 C 1.56797 * 105.81537 * 57.19817 * 16 15 14 19 19 O 1.45496 * 99.22260 * 318.90529 * 18 16 15 20 20 H 1.08991 * 109.47338 * 302.62069 * 1 2 3 21 21 H 1.09006 * 109.47250 * 62.62597 * 1 2 3 22 22 H 1.09001 * 109.46645 * 182.62225 * 1 2 3 23 23 H 1.08995 * 109.47113 * 240.00393 * 2 1 3 24 24 H 1.08994 * 109.47122 * 119.99853 * 2 1 3 25 25 H 1.08999 * 109.47635 * 192.20209 * 4 3 2 26 26 H 1.09000 * 109.47671 * 312.20545 * 4 3 2 27 27 H 0.97001 * 119.99294 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47141 * 80.16722 * 13 3 2 29 29 H 1.09002 * 109.46869 * 320.17158 * 13 3 2 30 30 H 1.09005 * 114.62776 * 274.73312 * 15 14 13 31 31 H 1.08990 * 114.63736 * 48.76413 * 15 14 13 32 32 H 1.08998 * 121.16924 * 196.22377 * 16 15 14 33 33 H 1.08995 * 114.55179 * 311.41418 * 17 14 13 34 34 H 1.08992 * 114.55300 * 85.14987 * 17 14 13 35 35 H 1.08999 * 111.44749 * 201.40022 * 18 16 15 36 36 H 1.09005 * 111.44010 * 76.40490 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4104 1.4518 -0.4678 5 6 3.4537 1.1973 -1.9526 6 1 2.5393 1.0057 -2.4945 7 6 4.6605 1.2102 -2.6194 8 7 4.6982 0.9877 -3.9151 9 14 6.2419 1.5424 -1.6823 10 1 6.8075 0.2586 -1.1950 11 1 7.2204 2.2047 -2.5817 12 1 5.9549 2.4277 -0.5252 13 6 1.8822 1.9920 1.3307 14 6 1.9114 3.5162 1.2016 15 6 0.7182 4.2474 0.5213 16 6 1.3530 5.4567 1.2760 17 6 1.4782 4.3944 2.4010 18 6 2.8351 5.5447 0.7720 19 8 3.1587 4.1263 0.7508 20 1 -0.3633 0.5539 0.8655 21 1 -0.3634 0.4725 -0.9126 22 1 -0.3633 -1.0266 0.0470 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.8179 2.4404 -0.2566 26 1 4.0039 0.6966 0.0475 27 1 5.5472 0.9964 -4.3841 28 1 2.7056 1.6652 1.9659 29 1 0.9360 1.6830 1.7750 30 1 0.7814 4.3063 -0.5653 31 1 -0.2648 3.9496 0.8860 32 1 0.7962 6.3812 1.4294 33 1 0.5318 4.1036 2.8567 34 1 2.2677 4.5922 3.1259 35 1 3.4646 6.0866 1.4777 36 1 2.8916 5.9813 -0.2252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716117826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:17 Heat of formation + Delta-G solvation = 22.982329 kcal Electronic energy + Delta-G solvation = -16493.592315 eV Core-core repulsion = 13980.331175 eV Total energy + Delta-G solvation = -2513.261140 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14334 -36.77242 -33.26392 -32.41798 -30.53876 -29.06466 -26.84163 -25.09741 -24.52543 -21.97990 -20.71350 -20.04861 -19.38705 -16.70917 -16.11574 -15.26271 -14.82796 -14.73445 -14.24953 -13.92334 -13.42586 -12.96715 -12.46407 -12.26494 -12.08645 -11.96774 -11.69638 -11.67922 -11.15984 -11.09834 -10.97989 -10.63041 -10.48775 -10.19329 -10.02822 -9.85110 -9.66159 -9.15121 -8.94918 -8.42879 -7.29624 -5.92995 -3.87651 3.38220 3.45510 3.55043 3.98043 4.35209 4.45746 4.55807 4.57837 4.91021 5.15613 5.30288 5.41238 5.60331 5.68532 5.73772 5.74987 5.83696 5.89520 5.94876 5.95696 5.99852 6.07182 6.22254 6.25530 6.33542 6.40828 6.70483 6.77886 6.95332 7.08763 7.22568 7.85085 8.02095 8.18864 8.79656 9.16417 9.70741 11.20420 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.010853 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.124837 B = 2579.279677 C = 3338.447285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 N -0.521 5.521 4 C 0.153 3.847 5 C -0.499 4.499 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.906 5.906 9 Si 0.869 3.131 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.261 1.261 13 C 0.090 3.910 14 C 0.092 3.908 15 C -0.138 4.138 16 C -0.164 4.164 17 C -0.171 4.171 18 C 0.049 3.951 19 O -0.342 6.342 20 H 0.043 0.957 21 H 0.060 0.940 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.017 0.983 25 H 0.055 0.945 26 H -0.022 1.022 27 H 0.261 0.739 28 H 0.034 0.966 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 5.908 12.573 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 N -0.245 5.245 4 C 0.027 3.973 5 C -0.537 4.537 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.546 5.546 9 Si 0.697 3.303 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.185 1.185 13 C -0.039 4.039 14 C 0.052 3.948 15 C -0.176 4.176 16 C -0.182 4.182 17 C -0.210 4.210 18 C -0.028 4.028 19 O -0.261 6.261 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.036 0.964 25 H 0.073 0.927 26 H -0.004 1.004 27 H 0.071 0.929 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.715 6.036 12.029 15.513 hybrid contribution 1.335 -0.057 1.002 1.671 sum -6.380 5.980 13.032 15.694 Atomic orbital electron populations 1.21775 0.96373 1.00092 1.01705 1.22017 0.94572 0.89919 1.00951 1.61917 1.24739 1.16887 1.20913 1.20428 0.83311 0.97083 0.96443 1.21041 0.94834 1.46977 0.90852 0.90383 1.24859 0.98696 0.95120 0.94693 1.69905 1.25906 1.50968 1.07781 0.86924 0.83893 0.78867 0.80631 1.20649 1.21384 1.18508 1.21555 1.00370 0.89584 0.92416 1.23874 0.84668 0.93086 0.93190 1.24208 0.97646 0.94477 1.01233 1.24940 0.97080 0.97414 0.98738 1.24508 1.01881 0.97968 0.96597 1.23855 0.93128 0.84959 1.00847 1.89855 1.30842 1.17114 1.88282 0.93805 0.92058 0.93387 0.89360 0.96435 0.92696 1.00441 0.92920 0.94822 0.90193 0.90086 0.88579 0.87257 0.88977 0.91346 0.90839 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.05 37.16 0.37 -1.82 16 2 C 0.05 1.02 5.52 -3.82 -0.02 1.00 16 3 N -0.52 -11.12 4.30 -236.07 -1.02 -12.13 16 4 C 0.15 3.92 3.61 -4.98 -0.02 3.90 16 5 C -0.50 -14.68 8.90 -34.44 -0.31 -14.99 16 6 H 0.08 2.49 7.96 -52.49 -0.42 2.07 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 9 Si 0.87 22.68 27.47 -169.99 -4.67 18.01 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 13 C 0.09 1.59 5.14 -3.82 -0.02 1.57 16 14 C 0.09 1.56 2.07 -96.74 -0.20 1.36 16 15 C -0.14 -2.05 7.74 -30.08 -0.23 -2.28 16 16 C -0.16 -2.11 6.47 -94.23 -0.61 -2.71 16 17 C -0.17 -2.22 7.39 -30.94 -0.23 -2.45 16 18 C 0.05 0.74 7.92 39.21 0.31 1.05 16 19 O -0.34 -6.85 9.49 -35.23 -0.33 -7.18 16 20 H 0.04 0.60 6.72 -51.93 -0.35 0.25 16 21 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 1.92 7.06 -51.93 -0.37 1.56 16 24 H 0.02 0.31 7.99 -51.93 -0.42 -0.10 16 25 H 0.06 1.48 4.47 -51.93 -0.23 1.24 16 26 H -0.02 -0.57 7.48 -51.93 -0.39 -0.96 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.03 0.61 7.99 -51.93 -0.42 0.20 16 29 H 0.08 1.18 6.48 -51.93 -0.34 0.85 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.20 7.83 -51.93 -0.41 0.80 16 32 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.09 1.00 7.83 -51.93 -0.41 0.59 16 34 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 283.34 15.07 4.27 4.27 Total: -1.00 -32.48 283.34 -7.88 -40.37 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.86 Total: -2.03 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.05 Total: -13.46 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: -0.24 Total: -39.97 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.33 Total: -7.18 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.67 Total: 18.01 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.48 -7.88 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716117826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.348 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds