Wall clock time and date at job start Mon Mar 30 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46902 * 109.46635 * 2 1 4 4 C 1.46894 * 110.99916 * 199.94685 * 3 2 1 5 5 C 1.50705 * 109.46792 * 72.20151 * 4 3 2 6 6 H 1.07998 * 119.99994 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99868 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99610 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00033 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47085 * 89.99306 * 9 7 5 11 11 H 1.48498 * 109.46945 * 209.99100 * 9 7 5 12 12 H 1.48492 * 109.47123 * 329.99634 * 9 7 5 13 13 C 1.46904 * 110.99840 * 75.99860 * 3 2 1 14 14 C 1.53003 * 109.47183 * 200.17147 * 13 3 2 15 15 C 1.55597 * 119.36902 * 69.05962 * 14 13 3 16 16 C 1.56038 * 80.83952 * 161.75428 * 15 14 13 17 17 C 1.54830 * 119.62370 * 166.64908 * 14 13 3 18 18 C 1.56797 * 105.81537 * 57.19817 * 16 15 14 19 19 O 1.45496 * 99.22260 * 318.90529 * 18 16 15 20 20 H 1.08991 * 109.47338 * 302.62069 * 1 2 3 21 21 H 1.09006 * 109.47250 * 62.62597 * 1 2 3 22 22 H 1.09001 * 109.46645 * 182.62225 * 1 2 3 23 23 H 1.08995 * 109.47113 * 240.00393 * 2 1 3 24 24 H 1.08994 * 109.47122 * 119.99853 * 2 1 3 25 25 H 1.08999 * 109.47635 * 192.20209 * 4 3 2 26 26 H 1.09000 * 109.47671 * 312.20545 * 4 3 2 27 27 H 0.97001 * 119.99294 * 180.02562 * 8 7 5 28 28 H 1.09001 * 109.47141 * 80.16722 * 13 3 2 29 29 H 1.09002 * 109.46869 * 320.17158 * 13 3 2 30 30 H 1.09005 * 114.62776 * 274.73312 * 15 14 13 31 31 H 1.08990 * 114.63736 * 48.76413 * 15 14 13 32 32 H 1.08998 * 121.16924 * 196.22377 * 16 15 14 33 33 H 1.08995 * 114.55179 * 311.41418 * 17 14 13 34 34 H 1.08992 * 114.55300 * 85.14987 * 17 14 13 35 35 H 1.08999 * 111.44749 * 201.40022 * 18 16 15 36 36 H 1.09005 * 111.44010 * 76.40490 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4104 1.4518 -0.4678 5 6 3.4537 1.1973 -1.9526 6 1 2.5393 1.0057 -2.4945 7 6 4.6605 1.2102 -2.6194 8 7 4.6982 0.9877 -3.9151 9 14 6.2419 1.5424 -1.6823 10 1 6.8075 0.2586 -1.1950 11 1 7.2204 2.2047 -2.5817 12 1 5.9549 2.4277 -0.5252 13 6 1.8822 1.9920 1.3307 14 6 1.9114 3.5162 1.2016 15 6 0.7182 4.2474 0.5213 16 6 1.3530 5.4567 1.2760 17 6 1.4782 4.3944 2.4010 18 6 2.8351 5.5447 0.7720 19 8 3.1587 4.1263 0.7508 20 1 -0.3633 0.5539 0.8655 21 1 -0.3634 0.4725 -0.9126 22 1 -0.3633 -1.0266 0.0470 23 1 1.8934 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.8179 2.4404 -0.2566 26 1 4.0039 0.6966 0.0475 27 1 5.5472 0.9964 -4.3841 28 1 2.7056 1.6652 1.9659 29 1 0.9360 1.6830 1.7750 30 1 0.7814 4.3063 -0.5653 31 1 -0.2648 3.9496 0.8860 32 1 0.7962 6.3812 1.4294 33 1 0.5318 4.1036 2.8567 34 1 2.2677 4.5922 3.1259 35 1 3.4646 6.0866 1.4777 36 1 2.8916 5.9813 -0.2252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716117826.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:17 Heat of formation + Delta-G solvation = -0.010755 kcal Electronic energy + Delta-G solvation = -16494.589370 eV Core-core repulsion = 13980.331175 eV Total energy + Delta-G solvation = -2514.258195 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.30443 -38.41719 -34.78014 -34.43868 -31.99293 -30.76950 -28.42823 -26.23090 -25.95020 -23.84108 -22.12272 -21.27098 -20.78354 -18.95837 -17.38597 -16.68404 -16.49771 -16.18657 -15.69931 -15.63610 -14.94141 -14.55503 -14.29154 -14.02123 -13.46760 -13.21244 -13.00507 -12.90933 -12.72036 -12.61393 -12.46487 -12.12730 -12.05275 -11.83203 -11.65536 -11.52004 -11.13489 -11.11817 -10.77597 -10.21508 -8.97540 -8.28166 -6.27712 1.28434 1.32059 1.46275 2.34053 2.82409 3.03233 3.08589 3.35201 3.46447 3.75932 3.85583 4.13189 4.26207 4.44684 4.54455 4.58697 4.65133 4.70246 4.73970 4.80083 4.87410 4.90751 4.93366 4.99350 5.06746 5.17327 5.21787 5.23857 5.32746 5.45693 5.66357 5.79575 6.02925 6.48988 6.68542 6.77100 7.34725 8.88789 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.010853 C = 0.008385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.124837 B = 2579.279677 C = 3338.447285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.168 3.832 5 C -0.502 4.502 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.258 1.258 13 C 0.089 3.911 14 C 0.057 3.943 15 C -0.139 4.139 16 C -0.143 4.143 17 C -0.147 4.147 18 C 0.035 3.965 19 O -0.393 6.393 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.033 0.967 25 H 0.046 0.954 26 H -0.029 1.029 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.116 0.884 30 H 0.044 0.956 31 H 0.127 0.873 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 6.837 15.538 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 N -0.259 5.259 4 C 0.041 3.959 5 C -0.541 4.541 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.591 5.591 9 Si 0.764 3.236 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.182 1.182 13 C -0.039 4.039 14 C 0.017 3.983 15 C -0.177 4.177 16 C -0.161 4.161 17 C -0.185 4.185 18 C -0.041 4.041 19 O -0.313 6.313 20 H 0.088 0.912 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.052 0.948 25 H 0.064 0.936 26 H -0.011 1.011 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.748 6.964 15.009 18.716 hybrid contribution 1.575 -0.373 0.025 1.618 sum -7.173 6.591 15.033 17.914 Atomic orbital electron populations 1.21677 0.93073 1.01960 1.02017 1.22055 0.97240 0.88715 0.99721 1.61830 1.21786 1.18375 1.23897 1.20081 0.86138 0.96013 0.93699 1.21262 0.93412 1.46403 0.93022 0.94513 1.25736 1.02484 0.94988 0.95588 1.70046 1.27084 1.52408 1.09519 0.85814 0.79349 0.79218 0.79226 1.19236 1.20478 1.18215 1.21729 1.01842 0.90326 0.90039 1.24230 0.84503 0.92919 0.96619 1.24328 0.98455 0.95673 0.99220 1.24898 0.95193 0.98267 0.97718 1.24432 1.03186 0.95656 0.95181 1.24119 0.95705 0.83150 1.01168 1.89772 1.32984 1.19597 1.88996 0.91171 0.93720 0.91005 0.93381 0.94830 0.93646 1.01096 0.92598 0.95572 0.86595 0.93752 0.85526 0.83717 0.85713 0.91098 0.88836 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 10.05 71.98 0.72 -3.04 16 2 C 0.05 1.93 5.52 86.30 0.48 2.40 16 3 N -0.53 -22.93 4.30 -900.78 -3.88 -26.81 16 4 C 0.17 8.79 3.61 85.56 0.31 9.10 16 5 C -0.50 -30.96 8.90 25.60 0.23 -30.73 16 6 H 0.04 2.50 7.96 -2.91 -0.02 2.47 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -62.02 13.96 21.45 0.30 -61.72 16 9 Si 0.94 47.92 27.47 68.60 1.88 49.80 16 10 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 12 H -0.26 -12.95 6.54 99.48 0.65 -12.30 16 13 C 0.09 2.97 5.14 86.30 0.44 3.42 16 14 C 0.06 1.82 2.07 -14.76 -0.03 1.79 16 15 C -0.14 -3.83 7.74 28.42 0.22 -3.61 16 16 C -0.14 -3.20 6.47 -13.13 -0.08 -3.28 16 17 C -0.15 -3.19 7.39 27.87 0.21 -2.98 16 18 C 0.03 1.01 7.92 73.31 0.58 1.59 16 19 O -0.39 -15.67 9.49 -148.98 -1.41 -17.08 16 20 H 0.07 1.66 6.72 -2.39 -0.02 1.65 16 21 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.05 2.19 7.06 -2.39 -0.02 2.17 16 24 H 0.03 1.16 7.99 -2.39 -0.02 1.14 16 25 H 0.05 2.49 4.47 -2.39 -0.01 2.48 16 26 H -0.03 -1.51 7.48 -2.39 -0.02 -1.52 16 27 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 28 H 0.03 0.91 7.99 -2.39 -0.02 0.89 16 29 H 0.12 2.97 6.48 -2.39 -0.02 2.96 16 30 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.13 2.65 7.83 -2.39 -0.02 2.63 16 32 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.12 1.93 7.83 -2.39 -0.02 1.91 16 34 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -74.37 283.34 1.41 -72.96 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.98 Total: 7.19 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.53 Total: -24.35 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -3.58 Total: -88.53 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -1.41 Total: -17.08 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 1.88 Total: 49.80 kcal Total: -74.37 1.41 -72.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716117826.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal (2) G-P(sol) polarization free energy of solvation -74.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds