Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47006 * 2 1 4 4 O 1.42907 * 109.46965 * 119.99286 * 2 1 3 5 5 C 1.52996 * 109.47505 * 239.99474 * 2 1 3 6 6 C 1.53512 * 114.17288 * 179.97438 * 5 2 1 7 7 N 1.47482 * 87.93131 * 139.86143 * 6 5 2 8 8 C 1.46899 * 111.00172 * 221.29907 * 7 6 5 9 9 C 1.53001 * 109.47476 * 176.33253 * 8 7 6 10 10 C 1.50697 * 115.54806 * 304.75842 * 9 8 7 11 11 H 1.08005 * 119.99874 * 279.35406 * 10 9 8 12 12 C 1.37875 * 120.00426 * 99.62246 * 10 9 8 13 13 N 1.31517 * 120.00236 * 174.06617 * 12 10 9 14 14 Si 1.86806 * 119.99706 * 354.07083 * 12 10 9 15 15 H 1.48502 * 109.46979 * 94.75847 * 14 12 10 16 16 H 1.48495 * 109.46961 * 214.75620 * 14 12 10 17 17 H 1.48495 * 109.47145 * 334.76013 * 14 12 10 18 18 C 1.53001 * 117.51608 * 90.45172 * 9 8 7 19 19 C 1.53000 * 117.50043 * 159.08404 * 9 8 7 20 20 C 1.47483 * 87.83718 * 332.99208 * 7 6 5 21 21 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47798 * 300.00619 * 1 2 3 23 23 H 1.08999 * 109.47103 * 60.00786 * 1 2 3 24 24 H 0.96697 * 113.99615 * 60.00497 * 4 2 1 25 25 H 1.09002 * 113.25827 * 47.05055 * 5 2 1 26 26 H 1.09004 * 113.47364 * 25.10014 * 6 5 2 27 27 H 1.08994 * 113.53225 * 254.64037 * 6 5 2 28 28 H 1.09007 * 109.47278 * 56.32831 * 8 7 6 29 29 H 1.09005 * 109.47141 * 296.33617 * 8 7 6 30 30 H 0.97003 * 119.99654 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49630 * 214.96944 * 18 9 8 32 32 H 1.08999 * 117.50043 * 359.97438 * 18 9 8 33 33 H 1.08999 * 117.50011 * 359.97438 * 19 9 8 34 34 H 1.09002 * 117.49310 * 144.99994 * 19 9 8 35 35 H 1.08998 * 113.47936 * 141.77504 * 20 7 6 36 36 H 1.08999 * 113.47659 * 272.24326 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7213 -1.2491 6 6 3.5700 -0.7837 -1.3583 7 7 3.4251 -2.1659 -1.8516 8 6 4.4453 -3.0444 -1.2639 9 6 4.2074 -4.4833 -1.7265 10 6 2.8326 -5.0356 -1.4509 11 1 2.5892 -5.4130 -0.4687 12 6 1.8873 -5.0644 -2.4541 13 7 0.7283 -5.6513 -2.2490 14 14 2.2527 -4.2699 -4.1048 15 1 2.7728 -5.2961 -5.0438 16 1 1.0068 -3.6799 -4.6568 17 1 3.2691 -3.2021 -3.9260 18 6 4.9077 -4.9385 -3.0084 19 6 5.3873 -5.4542 -1.6500 20 6 2.1613 -2.2439 -1.0954 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7210 -1.5951 1.2331 25 1 1.5403 -0.4032 -2.1641 26 1 4.0771 -0.7171 -0.3957 27 1 3.9816 -0.0989 -2.0997 28 1 4.3827 -2.9973 -0.1766 29 1 5.4345 -2.7182 -1.5853 30 1 0.0634 -5.6718 -2.9550 31 1 4.3741 -5.6377 -3.6522 32 1 5.5378 -4.2128 -3.5226 33 1 6.3332 -5.0679 -1.2705 34 1 5.1691 -6.4926 -1.4003 35 1 1.3780 -2.7964 -1.6144 36 1 2.2924 -2.5670 -0.0627 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719849258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = 17.408512 kcal Electronic energy + Delta-G solvation = -16691.419275 eV Core-core repulsion = 14177.916437 eV Total energy + Delta-G solvation = -2513.502838 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.05421 -37.08327 -35.83219 -32.04765 -31.23296 -28.76198 -25.95791 -25.06767 -24.15575 -21.87193 -21.32584 -18.99926 -18.83867 -16.84897 -15.98485 -15.53601 -15.01864 -14.82272 -14.40517 -13.98649 -13.41035 -12.81718 -12.60651 -12.44423 -12.08692 -12.02167 -11.79340 -11.48568 -11.06587 -10.75327 -10.55720 -10.39340 -10.12543 -9.97658 -9.71573 -9.58105 -9.45219 -8.90759 -8.61983 -8.34867 -7.77691 -6.04208 -4.06983 3.44930 3.56039 3.86324 4.55022 4.60073 4.64391 4.73080 5.08020 5.21088 5.27718 5.35408 5.45936 5.61796 5.71767 5.86545 5.93923 6.03830 6.06003 6.11982 6.13065 6.22071 6.31981 6.40920 6.49720 6.56052 6.66596 6.72874 6.83225 7.01711 7.18252 7.32584 7.81764 7.83916 7.89463 8.53926 8.95252 9.61688 11.05321 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.011282 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.333236 B = 2481.210843 C = 2854.187493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 H 0.094 0.906 4 O -0.568 6.568 5 C -0.167 4.167 6 C -0.001 4.001 7 N -0.450 5.450 8 C 0.063 3.937 9 C 0.012 3.988 10 C -0.488 4.488 11 H 0.072 0.928 12 C 0.085 3.915 13 N -0.902 5.902 14 Si 0.866 3.134 15 H -0.297 1.297 16 H -0.306 1.306 17 H -0.210 1.210 18 C -0.197 4.197 19 C -0.188 4.188 20 C 0.036 3.964 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.378 0.622 25 H 0.099 0.901 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.262 0.738 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 10.138 2.316 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.055 3.945 3 H 0.112 0.888 4 O -0.376 6.376 5 C -0.187 4.187 6 C -0.130 4.130 7 N -0.172 5.172 8 C -0.066 4.066 9 C 0.011 3.989 10 C -0.525 4.525 11 H 0.090 0.910 12 C -0.117 4.117 13 N -0.539 5.539 14 Si 0.695 3.305 15 H -0.225 1.225 16 H -0.234 1.234 17 H -0.131 1.131 18 C -0.234 4.234 19 C -0.226 4.226 20 C -0.092 4.092 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.228 0.772 25 H 0.118 0.882 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.715 10.499 1.642 10.968 hybrid contribution -0.151 -0.276 -0.358 0.476 sum 2.564 10.223 1.284 10.618 Atomic orbital electron populations 1.22456 0.96590 1.03021 1.02023 1.21663 0.92627 0.95854 0.84323 0.88802 1.86506 1.77479 1.29804 1.43773 1.23686 0.97059 0.98868 0.99041 1.23801 0.95476 0.94473 0.99286 1.69032 1.03403 1.00522 1.44226 1.22238 0.93913 0.94255 0.96199 1.19323 0.93494 0.89935 0.96112 1.20142 0.92808 1.40655 0.98914 0.91016 1.24938 0.94501 0.93594 0.98671 1.69945 1.06950 1.42805 1.34188 0.87120 0.78822 0.81721 0.82868 1.22527 1.23368 1.13129 1.22856 1.05110 1.03952 0.91525 1.22902 0.98350 1.00261 1.01102 1.23599 0.95309 0.92179 0.98138 0.91764 0.92318 0.91807 0.77179 0.88248 0.91507 0.91102 0.94599 0.93296 0.92850 0.89884 0.90926 0.91318 0.89682 0.88977 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.23 9.53 37.16 0.35 -1.87 16 2 C 0.11 1.54 3.70 -26.73 -0.10 1.44 16 3 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 4 O -0.57 -8.39 12.56 -35.23 -0.44 -8.83 16 5 C -0.17 -2.60 3.92 -90.09 -0.35 -2.95 16 6 C 0.00 -0.02 7.20 -7.54 -0.05 -0.07 16 7 N -0.45 -8.98 3.88 -244.60 -0.95 -9.92 16 8 C 0.06 1.28 4.81 -3.82 -0.02 1.26 16 9 C 0.01 0.29 1.39 -155.66 -0.22 0.07 16 10 C -0.49 -13.09 7.66 -34.44 -0.26 -13.36 16 11 H 0.07 2.12 8.06 -52.48 -0.42 1.69 16 12 C 0.09 2.37 4.07 -17.82 -0.07 2.30 16 13 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 14 Si 0.87 21.93 22.53 -169.99 -3.83 18.10 16 15 H -0.30 -7.70 6.95 56.52 0.39 -7.30 16 16 H -0.31 -7.92 7.11 56.52 0.40 -7.51 16 17 H -0.21 -5.06 5.24 56.52 0.30 -4.76 16 18 C -0.20 -4.38 7.14 -26.73 -0.19 -4.57 16 19 C -0.19 -3.92 9.95 -26.73 -0.27 -4.19 16 20 C 0.04 0.70 4.74 -7.54 -0.04 0.66 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.38 5.23 6.89 45.56 0.31 5.54 16 25 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 26 H 0.07 1.07 7.53 -51.93 -0.39 0.68 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.72 7.55 -51.92 -0.39 0.32 16 29 H 0.05 0.93 8.10 -51.93 -0.42 0.51 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.08 1.98 6.05 -51.93 -0.31 1.67 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 35 H 0.09 2.09 5.88 -51.93 -0.31 1.79 16 36 H 0.07 1.31 5.38 -51.93 -0.28 1.03 16 LS Contribution 273.37 15.07 4.12 4.12 Total: -1.00 -29.52 273.37 -6.81 -36.33 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.26 Total: 7.47 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.22 Total: -21.28 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.18 Total: -35.90 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -0.44 Total: -8.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -3.83 Total: 18.10 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.52 -6.81 -36.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719849258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.735 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds