Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47006 * 2 1 4 4 O 1.42907 * 109.46965 * 119.99286 * 2 1 3 5 5 C 1.52996 * 109.47505 * 239.99474 * 2 1 3 6 6 C 1.53512 * 114.17288 * 179.97438 * 5 2 1 7 7 N 1.47482 * 87.93131 * 139.86143 * 6 5 2 8 8 C 1.46899 * 111.00172 * 221.29907 * 7 6 5 9 9 C 1.53001 * 109.47476 * 176.33253 * 8 7 6 10 10 C 1.50697 * 115.54806 * 304.75842 * 9 8 7 11 11 H 1.08005 * 119.99874 * 279.35406 * 10 9 8 12 12 C 1.37875 * 120.00426 * 99.62246 * 10 9 8 13 13 N 1.31517 * 120.00236 * 174.06617 * 12 10 9 14 14 Si 1.86806 * 119.99706 * 354.07083 * 12 10 9 15 15 H 1.48502 * 109.46979 * 94.75847 * 14 12 10 16 16 H 1.48495 * 109.46961 * 214.75620 * 14 12 10 17 17 H 1.48495 * 109.47145 * 334.76013 * 14 12 10 18 18 C 1.53001 * 117.51608 * 90.45172 * 9 8 7 19 19 C 1.53000 * 117.50043 * 159.08404 * 9 8 7 20 20 C 1.47483 * 87.83718 * 332.99208 * 7 6 5 21 21 H 1.08999 * 109.47006 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47798 * 300.00619 * 1 2 3 23 23 H 1.08999 * 109.47103 * 60.00786 * 1 2 3 24 24 H 0.96697 * 113.99615 * 60.00497 * 4 2 1 25 25 H 1.09002 * 113.25827 * 47.05055 * 5 2 1 26 26 H 1.09004 * 113.47364 * 25.10014 * 6 5 2 27 27 H 1.08994 * 113.53225 * 254.64037 * 6 5 2 28 28 H 1.09007 * 109.47278 * 56.32831 * 8 7 6 29 29 H 1.09005 * 109.47141 * 296.33617 * 8 7 6 30 30 H 0.97003 * 119.99654 * 180.02562 * 13 12 10 31 31 H 1.09002 * 117.49630 * 214.96944 * 18 9 8 32 32 H 1.08999 * 117.50043 * 359.97438 * 18 9 8 33 33 H 1.08999 * 117.50011 * 359.97438 * 19 9 8 34 34 H 1.09002 * 117.49310 * 144.99994 * 19 9 8 35 35 H 1.08998 * 113.47936 * 141.77504 * 20 7 6 36 36 H 1.08999 * 113.47659 * 272.24326 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.0401 -0.7213 -1.2491 6 6 3.5700 -0.7837 -1.3583 7 7 3.4251 -2.1659 -1.8516 8 6 4.4453 -3.0444 -1.2639 9 6 4.2074 -4.4833 -1.7265 10 6 2.8326 -5.0356 -1.4509 11 1 2.5892 -5.4130 -0.4687 12 6 1.8873 -5.0644 -2.4541 13 7 0.7283 -5.6513 -2.2490 14 14 2.2527 -4.2699 -4.1048 15 1 2.7728 -5.2961 -5.0438 16 1 1.0068 -3.6799 -4.6568 17 1 3.2691 -3.2021 -3.9260 18 6 4.9077 -4.9385 -3.0084 19 6 5.3873 -5.4542 -1.6500 20 6 2.1613 -2.2439 -1.0954 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.7210 -1.5951 1.2331 25 1 1.5403 -0.4032 -2.1641 26 1 4.0771 -0.7171 -0.3957 27 1 3.9816 -0.0989 -2.0997 28 1 4.3827 -2.9973 -0.1766 29 1 5.4345 -2.7182 -1.5853 30 1 0.0634 -5.6718 -2.9550 31 1 4.3741 -5.6377 -3.6522 32 1 5.5378 -4.2128 -3.5226 33 1 6.3332 -5.0679 -1.2705 34 1 5.1691 -6.4926 -1.4003 35 1 1.3780 -2.7964 -1.6144 36 1 2.2924 -2.5670 -0.0627 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719849258.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -4.568272 kcal Electronic energy + Delta-G solvation = -16692.372260 eV Core-core repulsion = 14177.916437 eV Total energy + Delta-G solvation = -2514.455823 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44087 -38.65291 -37.20303 -34.19463 -32.41798 -30.11793 -27.88361 -26.55988 -25.62063 -23.43722 -22.73530 -20.70086 -20.32042 -18.51534 -17.59663 -16.87870 -16.70386 -16.25118 -15.80529 -15.60719 -14.99710 -14.67193 -14.04458 -13.89263 -13.61289 -13.52070 -13.10441 -12.83723 -12.73660 -12.50169 -12.06487 -11.92744 -11.74542 -11.63712 -11.42568 -11.14576 -10.94080 -10.67814 -10.55069 -10.20068 -9.36993 -8.23361 -6.26569 1.39641 1.48286 1.81552 2.52018 3.03441 3.19606 3.45002 3.49064 3.50684 3.97659 4.08210 4.23542 4.33556 4.39649 4.43886 4.50806 4.58356 4.71868 4.74363 4.84388 4.86750 4.90938 4.93269 5.05826 5.09652 5.15398 5.30764 5.34611 5.40998 5.48683 5.73167 5.81349 6.32040 6.40610 6.71849 6.78870 7.44345 8.90080 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.011282 C = 0.009808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.333236 B = 2481.210843 C = 2854.187493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.118 3.882 3 H 0.117 0.883 4 O -0.577 6.577 5 C -0.150 4.150 6 C 0.008 3.992 7 N -0.475 5.475 8 C 0.071 3.929 9 C -0.013 4.013 10 C -0.475 4.475 11 H 0.030 0.970 12 C 0.046 3.954 13 N -0.948 5.948 14 Si 0.918 3.082 15 H -0.305 1.305 16 H -0.317 1.317 17 H -0.185 1.185 18 C -0.197 4.197 19 C -0.171 4.171 20 C 0.034 3.966 21 H 0.045 0.955 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.379 0.621 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 12.475 2.020 13.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.059 3.941 3 H 0.134 0.866 4 O -0.386 6.386 5 C -0.169 4.169 6 C -0.120 4.120 7 N -0.197 5.197 8 C -0.058 4.058 9 C -0.014 4.014 10 C -0.513 4.513 11 H 0.048 0.952 12 C -0.152 4.152 13 N -0.588 5.588 14 Si 0.746 3.254 15 H -0.234 1.234 16 H -0.246 1.246 17 H -0.106 1.106 18 C -0.234 4.234 19 C -0.209 4.209 20 C -0.095 4.095 21 H 0.064 0.936 22 H 0.089 0.911 23 H 0.095 0.905 24 H 0.229 0.771 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.633 12.847 1.358 13.724 hybrid contribution -0.745 -1.064 -0.182 1.312 sum 3.888 11.783 1.176 12.463 Atomic orbital electron populations 1.22428 0.95797 1.02240 1.03318 1.21775 0.93273 0.96282 0.82778 0.86574 1.86491 1.77767 1.29988 1.44320 1.23626 0.97123 0.95846 1.00340 1.23796 0.95823 0.92384 1.00007 1.68936 1.03314 1.02518 1.44892 1.22109 0.95161 0.92349 0.96142 1.19361 0.92031 0.92143 0.97902 1.20223 0.94972 1.39288 0.96775 0.95178 1.25499 0.94191 0.94069 1.01450 1.70061 1.08252 1.45362 1.35143 0.86355 0.78529 0.81252 0.79271 1.23380 1.24617 1.10560 1.22856 1.05066 1.04041 0.91430 1.22941 0.98805 0.99266 0.99856 1.23444 0.94307 0.94664 0.97130 0.93584 0.91098 0.90473 0.77100 0.87791 0.90884 0.89135 0.94708 0.90961 0.93143 0.92115 0.88360 0.87635 0.90857 0.93183 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 9.53 71.98 0.69 -3.37 16 2 C 0.12 2.87 3.70 30.59 0.11 2.98 16 3 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 4 O -0.58 -16.08 12.56 -148.98 -1.87 -17.95 16 5 C -0.15 -4.34 3.92 -10.45 -0.04 -4.38 16 6 C 0.01 0.25 7.20 83.58 0.60 0.85 16 7 N -0.47 -17.85 3.88 -927.78 -3.60 -21.45 16 8 C 0.07 2.71 4.81 86.30 0.42 3.12 16 9 C -0.01 -0.59 1.39 -52.93 -0.07 -0.67 16 10 C -0.48 -26.05 7.66 25.60 0.20 -25.85 16 11 H 0.03 1.86 8.06 -2.91 -0.02 1.83 16 12 C 0.05 2.60 4.07 84.65 0.34 2.95 16 13 N -0.95 -58.58 13.96 21.45 0.30 -58.28 16 14 Si 0.92 45.83 22.53 68.60 1.55 47.37 16 15 H -0.31 -15.51 6.95 99.48 0.69 -14.82 16 16 H -0.32 -16.30 7.11 99.48 0.71 -15.59 16 17 H -0.18 -8.42 5.24 99.48 0.52 -7.90 16 18 C -0.20 -8.24 7.14 30.60 0.22 -8.03 16 19 C -0.17 -6.70 9.95 30.60 0.30 -6.40 16 20 C 0.03 1.28 4.74 83.58 0.40 1.68 16 21 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 24 H 0.38 10.36 6.89 -74.06 -0.51 9.85 16 25 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 26 H 0.07 2.07 7.53 -2.38 -0.02 2.05 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.03 1.32 7.55 -2.38 -0.02 1.30 16 29 H 0.07 2.42 8.10 -2.38 -0.02 2.40 16 30 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 31 H 0.06 2.82 6.05 -2.39 -0.01 2.80 16 32 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 33 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 34 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 35 H 0.05 2.33 5.88 -2.39 -0.01 2.31 16 36 H 0.06 2.43 5.38 -2.39 -0.01 2.42 16 Total: -1.00 -64.34 273.37 -0.12 -64.46 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.34 Total: 22.95 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.16 Total: -37.11 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -3.30 Total: -79.73 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -1.87 Total: -17.95 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.55 Total: 47.37 kcal Total: -64.34 -0.12 -64.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719849258.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.893 kcal (2) G-P(sol) polarization free energy of solvation -64.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds