Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46878 * 2 1 4 4 O 1.42897 * 109.47123 * 240.00202 * 2 1 3 5 5 C 1.52998 * 109.47679 * 119.99625 * 2 1 3 6 6 C 1.53508 * 114.17616 * 184.99816 * 5 2 1 7 7 N 1.47479 * 87.93724 * 220.33308 * 6 5 2 8 8 C 1.46895 * 111.00112 * 138.70460 * 7 6 5 9 9 C 1.52994 * 109.46948 * 165.66067 * 8 7 6 10 10 C 1.50702 * 115.55055 * 278.84233 * 9 8 7 11 11 H 1.07999 * 120.00514 * 116.08639 * 10 9 8 12 12 C 1.37881 * 119.99779 * 296.08580 * 10 9 8 13 13 N 1.31517 * 119.99961 * 354.67850 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 174.68071 * 12 10 9 15 15 H 1.48500 * 109.47197 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47242 * 119.99772 * 14 12 10 17 17 H 1.48492 * 109.47206 * 239.99593 * 14 12 10 18 18 C 1.53008 * 117.49994 * 133.13441 * 9 8 7 19 19 C 1.53001 * 59.99851 * 252.50735 * 18 9 8 20 20 C 1.47479 * 87.83223 * 27.00914 * 7 6 5 21 21 H 1.09005 * 109.47251 * 299.99717 * 1 2 3 22 22 H 1.08997 * 109.47556 * 59.99897 * 1 2 3 23 23 H 1.09006 * 109.47040 * 180.02562 * 1 2 3 24 24 H 0.96703 * 114.00108 * 299.99596 * 4 2 1 25 25 H 1.09002 * 113.25400 * 317.95976 * 5 2 1 26 26 H 1.09001 * 113.47316 * 105.56256 * 6 5 2 27 27 H 1.09001 * 113.47529 * 335.10251 * 6 5 2 28 28 H 1.08997 * 109.47127 * 45.66058 * 8 7 6 29 29 H 1.08997 * 109.47127 * 285.66051 * 8 7 6 30 30 H 0.97003 * 119.99950 * 180.02562 * 13 12 10 31 31 H 1.08994 * 117.49191 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.49608 * 145.02002 * 18 9 8 33 33 H 1.08998 * 117.49969 * 252.51023 * 19 18 9 34 34 H 1.09001 * 117.49956 * 107.48901 * 19 18 9 35 35 H 1.09000 * 113.47587 * 87.75792 * 20 7 6 36 36 H 1.08999 * 113.47838 * 218.22154 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7211 1.2492 6 6 3.5650 -0.6792 1.4207 7 7 3.5002 -2.0840 1.8649 8 6 4.6034 -2.8681 1.2939 9 6 4.7209 -4.1998 2.0378 10 6 5.4619 -4.1487 3.3491 11 1 4.9454 -4.3735 4.2705 12 6 6.7996 -3.8150 3.3724 13 7 7.4543 -3.6438 2.2448 14 14 7.6817 -3.6062 5.0057 15 1 6.7290 -3.8524 6.1179 16 1 8.8024 -4.5769 5.0906 17 1 8.2152 -2.2242 5.1069 18 6 4.8611 -5.4696 1.1956 19 6 3.5490 -5.1772 1.9263 20 6 2.2763 -2.2254 1.0542 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 1.4823 -0.4671 2.1507 26 1 3.8956 0.0077 2.1997 27 1 4.1038 -0.5448 0.4828 28 1 5.5352 -2.3118 1.3955 29 1 4.4065 -3.0575 0.2387 30 1 8.3955 -3.4094 2.2612 31 1 4.8700 -5.3559 0.1117 32 1 5.4896 -6.2681 1.5899 33 1 3.3143 -5.7834 2.8012 34 1 2.6943 -4.8714 1.3230 35 1 2.4713 -2.5036 0.0185 36 1 1.5148 -2.8489 1.5225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719849260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = 7.641098 kcal Electronic energy + Delta-G solvation = -16146.032281 eV Core-core repulsion = 13632.105896 eV Total energy + Delta-G solvation = -2513.926385 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12767 -36.95084 -35.72776 -31.92542 -31.36080 -28.66562 -25.75426 -25.38890 -24.15283 -21.72192 -20.97310 -19.27917 -18.90631 -16.85066 -15.86737 -15.66796 -15.17638 -14.59471 -14.50232 -13.94103 -13.23585 -13.12264 -12.76353 -12.45468 -12.07338 -12.03535 -11.71117 -11.04328 -10.93769 -10.92898 -10.79200 -10.45965 -10.26865 -10.15813 -10.07227 -9.74845 -9.22949 -8.82872 -8.47700 -8.07635 -7.89174 -5.96610 -3.97603 3.33077 3.41120 3.46255 4.38140 4.47052 4.49628 4.61421 5.00336 5.12261 5.26546 5.28022 5.42957 5.51352 5.68161 5.83633 5.85882 5.94448 5.99841 6.10053 6.13842 6.20753 6.29171 6.46542 6.55421 6.66506 6.78482 6.92355 7.08160 7.32002 7.47159 7.63487 7.67799 7.95650 8.01244 8.56517 9.01096 9.64643 11.12876 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036697 B = 0.007301 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.823706 B = 3833.995699 C = 4147.196019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.110 3.890 3 H 0.099 0.901 4 O -0.563 6.563 5 C -0.155 4.155 6 C 0.005 3.995 7 N -0.446 5.446 8 C 0.069 3.931 9 C 0.067 3.933 10 C -0.473 4.473 11 H 0.058 0.942 12 C 0.066 3.934 13 N -0.886 5.886 14 Si 0.889 3.111 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.284 1.284 18 C -0.183 4.183 19 C -0.204 4.204 20 C 0.001 3.999 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.373 0.627 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.015 0.985 30 H 0.258 0.742 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.992 5.837 -4.382 13.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.051 3.949 3 H 0.116 0.884 4 O -0.371 6.371 5 C -0.174 4.174 6 C -0.124 4.124 7 N -0.167 5.167 8 C -0.059 4.059 9 C 0.066 3.934 10 C -0.511 4.511 11 H 0.077 0.923 12 C -0.136 4.136 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.222 4.222 19 C -0.241 4.241 20 C -0.128 4.128 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.222 0.778 25 H 0.122 0.878 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.033 0.967 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.484 6.262 -3.838 12.801 hybrid contribution 0.431 -0.363 0.079 0.569 sum -10.053 5.898 -3.759 12.247 Atomic orbital electron populations 1.22462 0.96603 1.02507 1.02327 1.21763 0.92502 0.96365 0.84294 0.88360 1.86585 1.77409 1.29239 1.43834 1.23568 0.97867 0.97019 0.98960 1.23755 0.94335 0.94440 0.99895 1.68933 1.02923 1.01681 1.43161 1.22224 0.94255 0.96568 0.92884 1.18682 0.93880 0.85521 0.95274 1.20488 0.93583 1.45885 0.91169 0.92343 1.24954 0.97318 0.95233 0.96079 1.69996 1.09171 1.47944 1.25341 0.86577 0.79561 0.77634 0.84487 1.19742 1.21232 1.21057 1.22791 0.99164 1.04298 0.95914 1.22787 0.91569 1.07760 1.01992 1.23886 0.96734 0.95035 0.97189 0.91601 0.92211 0.92276 0.77786 0.87817 0.90555 0.91526 0.89357 0.96724 0.93252 0.92209 0.90411 0.90869 0.91960 0.91892 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.52 37.15 0.35 -1.34 16 2 C 0.11 1.28 3.69 -26.74 -0.10 1.18 16 3 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 4 O -0.56 -7.42 12.64 -35.23 -0.45 -7.86 16 5 C -0.16 -2.11 3.95 -90.09 -0.36 -2.47 16 6 C 0.01 0.09 7.15 -7.56 -0.05 0.03 16 7 N -0.45 -8.99 6.29 -244.67 -1.54 -10.53 16 8 C 0.07 1.60 4.70 -3.83 -0.02 1.58 16 9 C 0.07 1.69 1.53 -155.66 -0.24 1.46 16 10 C -0.47 -13.27 8.84 -34.44 -0.30 -13.57 16 11 H 0.06 1.67 7.82 -52.49 -0.41 1.26 16 12 C 0.07 1.84 5.27 -17.82 -0.09 1.74 16 13 N -0.89 -25.46 12.31 55.43 0.68 -24.78 16 14 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C -0.18 -4.38 9.88 -26.73 -0.26 -4.64 16 19 C -0.20 -4.55 9.74 -26.73 -0.26 -4.81 16 20 C 0.00 0.01 5.93 -7.56 -0.04 -0.03 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.37 4.08 6.96 45.56 0.32 4.40 16 25 H 0.10 1.34 8.12 -51.93 -0.42 0.92 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 28 H 0.09 2.33 6.90 -51.93 -0.36 1.97 16 29 H 0.01 0.33 7.03 -51.93 -0.36 -0.04 16 30 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 32 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 34 H 0.06 1.25 7.18 -51.93 -0.37 0.88 16 35 H 0.06 0.96 5.14 -51.93 -0.27 0.69 16 36 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 LS Contribution 290.63 15.07 4.38 4.38 Total: -1.00 -29.79 290.63 -8.53 -38.33 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.21 Total: 4.72 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: -1.38 Total: -20.87 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: -0.86 Total: -35.31 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.45 Total: -7.86 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.79 -8.53 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719849260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.967 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds