Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.46878 * 2 1 4 4 O 1.42897 * 109.47123 * 240.00202 * 2 1 3 5 5 C 1.52998 * 109.47679 * 119.99625 * 2 1 3 6 6 C 1.53508 * 114.17616 * 184.99816 * 5 2 1 7 7 N 1.47479 * 87.93724 * 220.33308 * 6 5 2 8 8 C 1.46895 * 111.00112 * 138.70460 * 7 6 5 9 9 C 1.52994 * 109.46948 * 165.66067 * 8 7 6 10 10 C 1.50702 * 115.55055 * 278.84233 * 9 8 7 11 11 H 1.07999 * 120.00514 * 116.08639 * 10 9 8 12 12 C 1.37881 * 119.99779 * 296.08580 * 10 9 8 13 13 N 1.31517 * 119.99961 * 354.67850 * 12 10 9 14 14 Si 1.86797 * 119.99963 * 174.68071 * 12 10 9 15 15 H 1.48500 * 109.47197 * 0.02562 * 14 12 10 16 16 H 1.48509 * 109.47242 * 119.99772 * 14 12 10 17 17 H 1.48492 * 109.47206 * 239.99593 * 14 12 10 18 18 C 1.53008 * 117.49994 * 133.13441 * 9 8 7 19 19 C 1.53001 * 59.99851 * 252.50735 * 18 9 8 20 20 C 1.47479 * 87.83223 * 27.00914 * 7 6 5 21 21 H 1.09005 * 109.47251 * 299.99717 * 1 2 3 22 22 H 1.08997 * 109.47556 * 59.99897 * 1 2 3 23 23 H 1.09006 * 109.47040 * 180.02562 * 1 2 3 24 24 H 0.96703 * 114.00108 * 299.99596 * 4 2 1 25 25 H 1.09002 * 113.25400 * 317.95976 * 5 2 1 26 26 H 1.09001 * 113.47316 * 105.56256 * 6 5 2 27 27 H 1.09001 * 113.47529 * 335.10251 * 6 5 2 28 28 H 1.08997 * 109.47127 * 45.66058 * 8 7 6 29 29 H 1.08997 * 109.47127 * 285.66051 * 8 7 6 30 30 H 0.97003 * 119.99950 * 180.02562 * 13 12 10 31 31 H 1.08994 * 117.49191 * 0.02562 * 18 9 8 32 32 H 1.08998 * 117.49608 * 145.02002 * 18 9 8 33 33 H 1.08998 * 117.49969 * 252.51023 * 19 18 9 34 34 H 1.09001 * 117.49956 * 107.48901 * 19 18 9 35 35 H 1.09000 * 113.47587 * 87.75792 * 20 7 6 36 36 H 1.08999 * 113.47838 * 218.22154 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7211 1.2492 6 6 3.5650 -0.6792 1.4207 7 7 3.5002 -2.0840 1.8649 8 6 4.6034 -2.8681 1.2939 9 6 4.7209 -4.1998 2.0378 10 6 5.4619 -4.1487 3.3491 11 1 4.9454 -4.3735 4.2705 12 6 6.7996 -3.8150 3.3724 13 7 7.4543 -3.6438 2.2448 14 14 7.6817 -3.6062 5.0057 15 1 6.7290 -3.8524 6.1179 16 1 8.8024 -4.5769 5.0906 17 1 8.2152 -2.2242 5.1069 18 6 4.8611 -5.4696 1.1956 19 6 3.5490 -5.1772 1.9263 20 6 2.2763 -2.2254 1.0542 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 1.4823 -0.4671 2.1507 26 1 3.8956 0.0077 2.1997 27 1 4.1038 -0.5448 0.4828 28 1 5.5352 -2.3118 1.3955 29 1 4.4065 -3.0575 0.2387 30 1 8.3955 -3.4094 2.2612 31 1 4.8700 -5.3559 0.1117 32 1 5.4896 -6.2681 1.5899 33 1 3.3143 -5.7834 2.8012 34 1 2.6943 -4.8714 1.3230 35 1 2.4713 -2.5036 0.0185 36 1 1.5148 -2.8489 1.5225 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719849260.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -14.060406 kcal Electronic energy + Delta-G solvation = -16146.973329 eV Core-core repulsion = 13632.105896 eV Total energy + Delta-G solvation = -2514.867433 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44071 -38.44453 -37.17345 -34.04365 -32.40010 -30.02269 -27.63113 -26.87716 -25.55504 -23.04955 -22.70482 -20.96181 -20.34964 -18.34052 -17.47791 -16.86246 -16.68472 -16.27157 -15.80116 -15.66595 -14.84204 -14.64877 -13.89642 -13.79008 -13.66492 -13.23435 -12.92129 -12.87329 -12.78561 -12.46439 -12.30460 -12.08560 -11.98246 -11.76448 -11.33741 -11.06994 -10.85644 -10.79209 -10.45045 -9.91913 -9.52443 -8.09299 -6.16089 1.38682 1.41245 1.52350 2.44037 3.11676 3.20577 3.39463 3.49995 3.65488 3.90473 4.20350 4.29232 4.35109 4.41187 4.47520 4.55071 4.58540 4.68040 4.77209 4.78368 4.89432 4.97595 4.98249 5.11222 5.16958 5.21333 5.33117 5.36797 5.59295 5.61179 5.73675 5.91648 6.36591 6.49839 6.78159 6.87534 7.48671 8.99492 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.036697 B = 0.007301 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.823706 B = 3833.995699 C = 4147.196019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.113 3.887 3 H 0.102 0.898 4 O -0.581 6.581 5 C -0.128 4.128 6 C -0.002 4.002 7 N -0.474 5.474 8 C 0.087 3.913 9 C 0.036 3.964 10 C -0.491 4.491 11 H 0.045 0.955 12 C 0.022 3.978 13 N -0.912 5.912 14 Si 0.948 3.052 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.281 1.281 18 C -0.188 4.188 19 C -0.177 4.177 20 C 0.002 3.998 21 H 0.078 0.922 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.381 0.619 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.750 6.387 -4.377 14.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 H 0.120 0.880 4 O -0.389 6.389 5 C -0.147 4.147 6 C -0.131 4.131 7 N -0.196 5.196 8 C -0.042 4.042 9 C 0.036 3.964 10 C -0.529 4.529 11 H 0.063 0.937 12 C -0.177 4.177 13 N -0.551 5.551 14 Si 0.774 3.226 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.207 1.207 18 C -0.227 4.227 19 C -0.214 4.214 20 C -0.127 4.127 21 H 0.097 0.903 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.232 0.768 25 H 0.135 0.865 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.258 6.804 -3.832 14.534 hybrid contribution 0.962 -0.539 0.073 1.105 sum -11.296 6.266 -3.759 13.453 Atomic orbital electron populations 1.22391 0.94322 1.03178 1.03304 1.21817 0.94168 0.95989 0.82656 0.87972 1.86570 1.77958 1.30060 1.44353 1.23471 0.95135 0.95452 1.00596 1.23798 0.97296 0.92768 0.99220 1.68881 1.03390 1.02873 1.44438 1.21854 0.93899 0.95524 0.92886 1.18813 0.95830 0.86888 0.94903 1.20724 0.94195 1.46032 0.91987 0.93687 1.25614 0.98015 0.95065 0.99044 1.70096 1.09313 1.48649 1.27009 0.85663 0.78450 0.77605 0.80876 1.19447 1.20698 1.20711 1.22736 1.00247 1.03190 0.96513 1.22774 0.91426 1.05538 1.01632 1.23939 0.94752 0.96904 0.97092 0.90325 0.91577 0.91772 0.76808 0.86530 0.90951 0.92472 0.93376 0.96385 0.93276 0.91004 0.92221 0.91008 0.89207 0.91072 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.52 71.98 0.69 -1.96 16 2 C 0.11 2.32 3.69 30.59 0.11 2.43 16 3 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 4 O -0.58 -14.02 12.64 -148.98 -1.88 -15.91 16 5 C -0.13 -3.17 3.95 -10.45 -0.04 -3.21 16 6 C 0.00 -0.05 7.15 83.57 0.60 0.54 16 7 N -0.47 -18.83 6.29 -927.99 -5.83 -24.66 16 8 C 0.09 4.08 4.70 86.30 0.41 4.49 16 9 C 0.04 1.84 1.53 -52.93 -0.08 1.76 16 10 C -0.49 -27.91 8.84 25.60 0.23 -27.68 16 11 H 0.04 2.60 7.82 -2.91 -0.02 2.58 16 12 C 0.02 1.23 5.27 84.66 0.45 1.67 16 13 N -0.91 -53.37 12.31 21.45 0.26 -53.11 16 14 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 C -0.19 -8.97 9.88 30.60 0.30 -8.67 16 19 C -0.18 -7.65 9.74 30.59 0.30 -7.35 16 20 C 0.00 0.06 5.93 83.57 0.50 0.55 16 21 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 23 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.38 7.45 6.96 -74.06 -0.52 6.93 16 25 H 0.12 2.65 8.12 -2.39 -0.02 2.63 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16 28 H 0.05 2.61 6.90 -2.39 -0.02 2.60 16 29 H 0.02 0.81 7.03 -2.39 -0.02 0.79 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.07 3.19 8.08 -2.39 -0.02 3.17 16 32 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.09 3.36 7.18 -2.39 -0.02 3.35 16 35 H 0.07 2.00 5.14 -2.39 -0.01 1.99 16 36 H 0.08 2.36 8.04 -2.39 -0.02 2.34 16 Total: -1.00 -63.88 290.63 -1.44 -65.32 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.54 Total: 18.86 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 3.45 Total: -37.42 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -5.57 Total: -77.77 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.88 Total: -15.91 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.88 -1.44 -65.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719849260.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.261 kcal (2) G-P(sol) polarization free energy of solvation -63.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds