Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00031 * 2 1 4 4 H 1.08005 * 120.00056 * 202.63337 * 3 2 1 5 5 C 1.38813 * 119.99848 * 22.62861 * 3 2 1 6 6 N 1.31611 * 120.00269 * 11.46981 * 5 3 2 7 7 Si 1.86800 * 119.99873 * 191.46623 * 5 3 2 8 8 H 1.48495 * 109.47251 * 90.00118 * 7 5 3 9 9 H 1.48503 * 109.47221 * 210.00390 * 7 5 3 10 10 H 1.48497 * 109.47251 * 330.00073 * 7 5 3 11 11 C 1.46501 * 119.99909 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46562 * 269.99311 * 11 2 1 13 13 H 1.09000 * 110.42089 * 304.13939 * 12 11 2 14 14 C 1.54439 * 110.37203 * 181.82691 * 12 11 2 15 15 C 1.54269 * 104.16263 * 216.25818 * 14 12 11 16 16 H 1.08995 * 113.28905 * 238.64355 * 15 14 12 17 17 C 1.54653 * 108.82999 * 112.36466 * 15 14 12 18 18 C 1.54838 * 102.92837 * 211.69403 * 17 15 14 19 19 C 1.54205 * 104.19741 * 38.08971 * 18 17 15 20 20 C 1.53806 * 106.77400 * 336.02710 * 19 18 17 21 21 H 1.08999 * 111.85236 * 238.04680 * 20 19 18 22 22 O 1.44288 * 110.37552 * 66.45960 * 12 11 2 23 23 H 1.09005 * 109.46511 * 273.95774 * 1 2 3 24 24 H 1.08994 * 109.47385 * 33.95421 * 1 2 3 25 25 H 1.08995 * 109.47011 * 153.95847 * 1 2 3 26 26 H 0.97001 * 120.00847 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.46977 * 149.99942 * 11 2 1 28 28 H 1.09000 * 109.47567 * 29.99357 * 11 2 1 29 29 H 1.08998 * 110.49167 * 97.59022 * 14 12 11 30 30 H 1.09005 * 110.48965 * 334.92494 * 14 12 11 31 31 H 1.08994 * 110.72338 * 330.05569 * 17 15 14 32 32 H 1.08999 * 110.72461 * 93.33990 * 17 15 14 33 33 H 1.08999 * 110.48596 * 156.76604 * 18 17 15 34 34 H 1.08995 * 110.48984 * 279.40716 * 18 17 15 35 35 H 1.09001 * 110.00159 * 95.35813 * 19 18 17 36 36 H 1.09005 * 109.99662 * 216.70172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1674 1.2219 -0.3600 5 6 1.5358 2.3417 0.4625 6 7 0.3901 2.2661 1.1059 7 14 2.3357 4.0046 0.1719 8 1 1.8588 4.5647 -1.1180 9 1 1.9733 4.9282 1.2769 10 1 3.8111 3.8428 0.1259 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 1 2.9780 -0.9300 1.9917 14 6 3.2643 -3.0245 1.4659 15 6 2.6893 -3.8015 2.6682 16 1 3.4377 -4.0431 3.4230 17 6 1.9430 -5.0507 2.1445 18 6 0.8113 -5.2394 3.1842 19 6 0.3677 -3.8024 3.5254 20 6 1.5594 -2.8831 3.2088 21 1 1.8784 -2.3165 4.0837 22 8 1.2078 -2.0350 2.0955 23 1 -0.3632 0.0709 1.0253 24 1 -0.3634 0.8524 -0.5739 25 1 -0.3633 -0.9233 -0.4512 26 1 -0.0388 3.0737 1.4295 27 1 3.1499 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5146 29 1 4.3233 -2.8160 1.6176 30 1 3.1128 -3.5836 0.5425 31 1 1.5292 -4.8655 1.1533 32 1 2.6036 -5.9177 2.1320 33 1 -0.0159 -5.8010 2.7501 34 1 1.1902 -5.7429 4.0735 35 1 -0.4913 -3.5227 2.9154 36 1 0.1132 -3.7320 4.5829 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720865876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -32.552289 kcal Electronic energy + Delta-G solvation = -16393.742243 eV Core-core repulsion = 13878.072941 eV Total energy + Delta-G solvation = -2515.669301 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.75589 -35.81735 -34.44114 -31.92862 -30.84920 -27.99270 -27.41348 -25.68869 -24.42960 -21.41296 -20.79050 -19.70694 -19.52584 -16.57204 -16.47058 -15.30779 -15.00340 -14.55536 -14.01608 -13.49251 -13.33524 -13.12967 -12.62732 -12.14837 -11.87950 -11.39619 -11.11326 -11.05075 -10.82207 -10.73508 -10.69310 -10.52813 -10.48109 -10.41326 -10.13741 -9.98250 -9.84937 -9.66643 -8.89915 -8.43644 -6.61362 -5.60052 -3.06247 3.43625 3.49256 3.50884 4.32432 4.58977 4.70397 4.78307 5.14867 5.33066 5.37310 5.48204 5.54818 5.60161 5.69018 5.76078 5.81646 5.93028 6.01966 6.04192 6.11665 6.18627 6.27528 6.31792 6.43114 6.48883 6.54833 6.70080 6.93466 7.02118 7.56598 7.73042 7.88137 8.03155 8.51720 9.36073 9.99923 10.50654 11.44230 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047231 B = 0.007083 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.693192 B = 3952.437333 C = 4108.200385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.597 5.597 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.001 3.999 6 N -0.903 5.903 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.159 3.841 12 C 0.057 3.943 13 H 0.064 0.936 14 C -0.147 4.147 15 C -0.125 4.125 16 H 0.084 0.916 17 C -0.114 4.114 18 C -0.122 4.122 19 C -0.121 4.121 20 C 0.070 3.930 21 H 0.066 0.934 22 O -0.346 6.346 23 H 0.032 0.968 24 H 0.038 0.962 25 H -0.007 1.007 26 H 0.251 0.749 27 H 0.055 0.945 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.128 -13.630 3.210 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.319 5.319 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.003 4.003 13 H 0.082 0.918 14 C -0.185 4.185 15 C -0.144 4.144 16 H 0.103 0.897 17 C -0.151 4.151 18 C -0.160 4.160 19 C -0.159 4.159 20 C 0.011 3.989 21 H 0.084 0.916 22 O -0.264 6.264 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.012 0.988 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.771 -13.395 3.186 14.045 hybrid contribution 0.652 0.948 0.210 1.170 sum 3.424 -12.447 3.396 13.348 Atomic orbital electron populations 1.20709 0.82227 0.94859 0.99392 1.43901 1.02143 1.00291 1.85542 1.19223 0.98135 0.85619 1.35610 0.91529 1.25040 0.97804 0.98391 0.98464 1.70099 1.18065 1.26790 1.39875 0.86284 0.78745 0.84395 0.77272 1.21567 1.21830 1.20602 1.20924 0.96138 0.88723 0.91135 1.23989 0.84231 0.93804 0.98301 0.91841 1.23067 0.99936 0.97670 0.97862 1.23240 0.97474 0.96139 0.97503 0.89727 1.22536 0.96677 0.96769 0.99132 1.22350 0.98299 0.96612 0.98695 1.22184 0.98695 0.93842 1.01176 1.23450 0.93681 0.90597 0.91168 0.91571 1.89221 1.28217 1.67771 1.41230 0.94960 0.94319 0.98816 0.93914 0.92705 0.93935 0.91605 0.90979 0.90936 0.92032 0.91776 0.92003 0.90329 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.62 8.74 59.85 0.52 5.14 16 2 N -0.60 -15.90 2.91 -181.11 -0.53 -16.43 16 3 C -0.26 -7.30 9.67 -15.06 -0.15 -7.44 16 4 H 0.07 1.84 7.85 -52.48 -0.41 1.42 16 5 C 0.00 0.04 5.12 -17.43 -0.09 -0.05 16 6 N -0.90 -27.46 10.61 55.49 0.59 -26.88 16 7 Si 0.90 22.44 29.57 -169.99 -5.03 17.41 16 8 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.16 3.45 5.33 -4.04 -0.02 3.43 16 12 C 0.06 1.15 3.54 -25.97 -0.09 1.06 16 13 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 14 C -0.15 -2.23 6.15 -25.31 -0.16 -2.39 16 15 C -0.12 -1.72 4.01 -87.86 -0.35 -2.08 16 16 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.11 -1.39 6.19 -24.89 -0.15 -1.54 16 18 C -0.12 -1.41 6.83 -25.13 -0.17 -1.58 16 19 C -0.12 -1.70 6.57 -25.68 -0.17 -1.87 16 20 C 0.07 1.14 4.22 -25.08 -0.11 1.04 16 21 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 22 O -0.35 -7.30 10.50 -35.23 -0.37 -7.67 16 23 H 0.03 0.94 7.43 -51.93 -0.39 0.56 16 24 H 0.04 1.09 7.19 -51.93 -0.37 0.72 16 25 H -0.01 -0.16 7.85 -51.93 -0.41 -0.57 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 28 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.03 7.13 -51.93 -0.37 0.66 16 31 H 0.07 0.97 7.60 -51.93 -0.39 0.57 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -31.30 283.57 -8.09 -39.39 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: -6.10 Total: -3.83 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.93 Total: -6.27 kcal Atomic # 7 Polarization: -43.37 SS G_CDS: 0.06 Total: -43.31 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.37 Total: -7.67 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.30 -8.09 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720865876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.841 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds