Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 120.00031 * 2 1 4 4 H 1.08005 * 120.00056 * 202.63337 * 3 2 1 5 5 C 1.38813 * 119.99848 * 22.62861 * 3 2 1 6 6 N 1.31611 * 120.00269 * 11.46981 * 5 3 2 7 7 Si 1.86800 * 119.99873 * 191.46623 * 5 3 2 8 8 H 1.48495 * 109.47251 * 90.00118 * 7 5 3 9 9 H 1.48503 * 109.47221 * 210.00390 * 7 5 3 10 10 H 1.48497 * 109.47251 * 330.00073 * 7 5 3 11 11 C 1.46501 * 119.99909 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46562 * 269.99311 * 11 2 1 13 13 H 1.09000 * 110.42089 * 304.13939 * 12 11 2 14 14 C 1.54439 * 110.37203 * 181.82691 * 12 11 2 15 15 C 1.54269 * 104.16263 * 216.25818 * 14 12 11 16 16 H 1.08995 * 113.28905 * 238.64355 * 15 14 12 17 17 C 1.54653 * 108.82999 * 112.36466 * 15 14 12 18 18 C 1.54838 * 102.92837 * 211.69403 * 17 15 14 19 19 C 1.54205 * 104.19741 * 38.08971 * 18 17 15 20 20 C 1.53806 * 106.77400 * 336.02710 * 19 18 17 21 21 H 1.08999 * 111.85236 * 238.04680 * 20 19 18 22 22 O 1.44288 * 110.37552 * 66.45960 * 12 11 2 23 23 H 1.09005 * 109.46511 * 273.95774 * 1 2 3 24 24 H 1.08994 * 109.47385 * 33.95421 * 1 2 3 25 25 H 1.08995 * 109.47011 * 153.95847 * 1 2 3 26 26 H 0.97001 * 120.00847 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.46977 * 149.99942 * 11 2 1 28 28 H 1.09000 * 109.47567 * 29.99357 * 11 2 1 29 29 H 1.08998 * 110.49167 * 97.59022 * 14 12 11 30 30 H 1.09005 * 110.48965 * 334.92494 * 14 12 11 31 31 H 1.08994 * 110.72338 * 330.05569 * 17 15 14 32 32 H 1.08999 * 110.72461 * 93.33990 * 17 15 14 33 33 H 1.08999 * 110.48596 * 156.76604 * 18 17 15 34 34 H 1.08995 * 110.48984 * 279.40716 * 18 17 15 35 35 H 1.09001 * 110.00159 * 95.35813 * 19 18 17 36 36 H 1.09005 * 109.99662 * 216.70172 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1674 1.2219 -0.3600 5 6 1.5358 2.3417 0.4625 6 7 0.3901 2.2661 1.1059 7 14 2.3357 4.0046 0.1719 8 1 1.8588 4.5647 -1.1180 9 1 1.9733 4.9282 1.2769 10 1 3.8111 3.8428 0.1259 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4418 13 1 2.9780 -0.9300 1.9917 14 6 3.2643 -3.0245 1.4659 15 6 2.6893 -3.8015 2.6682 16 1 3.4377 -4.0431 3.4230 17 6 1.9430 -5.0507 2.1445 18 6 0.8113 -5.2394 3.1842 19 6 0.3677 -3.8024 3.5254 20 6 1.5594 -2.8831 3.2088 21 1 1.8784 -2.3165 4.0837 22 8 1.2078 -2.0350 2.0955 23 1 -0.3632 0.0709 1.0253 24 1 -0.3634 0.8524 -0.5739 25 1 -0.3633 -0.9233 -0.4512 26 1 -0.0388 3.0737 1.4295 27 1 3.1499 -1.1382 -0.5144 28 1 1.6084 -2.0282 -0.5146 29 1 4.3233 -2.8160 1.6176 30 1 3.1128 -3.5836 0.5425 31 1 1.5292 -4.8655 1.1533 32 1 2.6036 -5.9177 2.1320 33 1 -0.0159 -5.8010 2.7501 34 1 1.1902 -5.7429 4.0735 35 1 -0.4913 -3.5227 2.9154 36 1 0.1132 -3.7320 4.5829 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720865876.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = -51.699120 kcal Electronic energy + Delta-G solvation = -16394.572512 eV Core-core repulsion = 13878.072941 eV Total energy + Delta-G solvation = -2516.499570 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.06589 -37.59568 -35.96652 -33.62175 -32.58792 -29.56547 -28.56232 -27.86830 -26.01456 -23.22489 -22.11528 -21.08672 -20.76266 -18.69775 -17.72790 -16.92679 -16.67041 -16.07943 -15.48363 -15.14414 -14.96458 -14.64609 -14.21589 -13.71770 -13.40199 -13.04318 -12.88877 -12.58177 -12.48159 -12.39555 -12.11341 -12.05831 -11.89267 -11.81340 -11.65657 -11.59868 -11.45721 -11.24521 -10.63390 -10.40498 -8.76701 -7.80142 -5.29245 1.45208 1.47372 1.55999 2.51274 3.04731 3.31773 3.59866 3.62463 3.76562 4.00923 4.21975 4.27141 4.34329 4.43439 4.56382 4.62002 4.68029 4.72145 4.83324 4.87714 4.92695 5.03481 5.06164 5.12019 5.18067 5.23693 5.30226 5.32830 5.36252 5.54457 5.63490 5.77636 6.29543 6.34477 7.16103 7.88563 8.35139 9.23699 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.047231 B = 0.007083 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.693192 B = 3952.437333 C = 4108.200385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.193 3.807 2 N -0.615 5.615 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.058 4.058 6 N -0.940 5.940 7 Si 0.972 3.028 8 H -0.284 1.284 9 H -0.297 1.297 10 H -0.265 1.265 11 C 0.155 3.845 12 C 0.059 3.941 13 H 0.027 0.973 14 C -0.135 4.135 15 C -0.116 4.116 16 H 0.109 0.891 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.121 4.121 20 C 0.052 3.948 21 H 0.056 0.944 22 O -0.382 6.382 23 H -0.002 1.002 24 H 0.014 0.986 25 H 0.018 0.982 26 H 0.246 0.754 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.750 -15.538 3.138 16.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.337 5.337 3 C -0.395 4.395 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.211 1.211 9 H -0.223 1.223 10 H -0.190 1.190 11 C 0.028 3.972 12 C -0.002 4.002 13 H 0.045 0.955 14 C -0.173 4.173 15 C -0.134 4.134 16 H 0.127 0.873 17 C -0.148 4.148 18 C -0.151 4.151 19 C -0.159 4.159 20 C -0.006 4.006 21 H 0.074 0.926 22 O -0.302 6.302 23 H 0.016 0.984 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.426 -15.343 3.107 16.268 hybrid contribution 0.133 1.499 0.249 1.526 sum 4.558 -13.844 3.356 14.956 Atomic orbital electron populations 1.20350 0.82943 0.94874 0.97044 1.44139 1.02135 1.01679 1.85797 1.19620 0.98459 0.86629 1.34809 0.90735 1.25890 0.98571 1.02151 0.98677 1.70297 1.19700 1.27285 1.41349 0.85186 0.78492 0.79517 0.76766 1.21129 1.22349 1.19003 1.21124 0.96412 0.87001 0.92629 1.23722 0.84684 0.95554 0.96217 0.95487 1.22984 1.00006 0.94983 0.99375 1.23272 0.96951 0.95949 0.97237 0.87280 1.22536 0.97037 0.96811 0.98396 1.22344 0.98510 0.94721 0.99559 1.22203 0.96905 0.95244 1.01544 1.23768 0.96151 0.90881 0.89769 0.92599 1.89189 1.29150 1.69011 1.42871 0.98360 0.96759 0.96328 0.94514 0.91287 0.92612 0.89890 0.89541 0.92330 0.89166 0.90770 0.89681 0.92688 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.64 8.74 127.77 1.12 11.76 16 2 N -0.61 -33.24 2.91 -726.92 -2.11 -35.36 16 3 C -0.27 -15.25 9.67 84.03 0.81 -14.44 16 4 H 0.07 4.08 7.85 -2.91 -0.02 4.06 16 5 C -0.06 -3.42 5.12 84.86 0.43 -2.99 16 6 N -0.94 -59.05 10.61 21.65 0.23 -58.82 16 7 Si 0.97 46.73 29.57 68.60 2.03 48.76 16 8 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 9 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.15 6.65 5.33 86.38 0.46 7.11 16 12 C 0.06 2.35 3.54 31.08 0.11 2.46 16 13 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 14 C -0.14 -3.79 6.15 31.51 0.19 -3.60 16 15 C -0.12 -2.87 4.01 -9.00 -0.04 -2.91 16 16 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.11 -2.30 6.19 31.78 0.20 -2.10 16 18 C -0.11 -2.26 6.83 31.63 0.22 -2.05 16 19 C -0.12 -3.28 6.57 31.27 0.21 -3.07 16 20 C 0.05 1.69 4.22 31.66 0.13 1.82 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 O -0.38 -16.46 10.50 -148.98 -1.56 -18.03 16 23 H 0.00 -0.12 7.43 -2.38 -0.02 -0.14 16 24 H 0.01 0.81 7.19 -2.39 -0.02 0.79 16 25 H 0.02 0.90 7.85 -2.39 -0.02 0.88 16 26 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 27 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 28 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 2.19 7.13 -2.38 -0.02 2.18 16 31 H 0.06 1.39 7.60 -2.39 -0.02 1.38 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.73 7.92 -2.39 -0.02 1.71 16 36 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -69.39 283.57 3.45 -65.94 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: 1.03 Total: 5.50 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 3.84 Total: -8.00 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -1.88 Total: -94.18 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -1.56 Total: -18.03 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -69.39 3.45 -65.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720865876.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.242 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds