Wall clock time and date at job start Mon Mar 30 2020 03:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00345 * 2 1 4 4 H 1.07996 * 119.99926 * 202.94696 * 3 2 1 5 5 C 1.38812 * 119.99838 * 22.94043 * 3 2 1 6 6 N 1.31622 * 119.99945 * 13.09621 * 5 3 2 7 7 Si 1.86803 * 119.99969 * 193.09240 * 5 3 2 8 8 H 1.48505 * 109.46939 * 90.00147 * 7 5 3 9 9 H 1.48501 * 109.47173 * 210.00302 * 7 5 3 10 10 H 1.48505 * 109.47079 * 330.00322 * 7 5 3 11 11 C 1.46500 * 119.99610 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47376 * 89.99857 * 11 2 1 13 13 H 1.08995 * 109.99445 * 305.12118 * 12 11 2 14 14 C 1.55768 * 110.00642 * 183.75103 * 12 11 2 15 15 C 1.52193 * 102.57979 * 245.89392 * 14 12 11 16 16 H 1.09002 * 111.87000 * 87.69663 * 15 14 12 17 17 C 1.52342 * 120.33851 * 222.10242 * 15 14 12 18 18 C 1.56069 * 102.29160 * 150.03218 * 17 15 14 19 19 C 1.55842 * 105.86141 * 334.64603 * 18 17 15 20 20 C 1.49817 * 105.03303 * 355.42479 * 19 18 17 21 21 H 1.09007 * 104.95247 * 282.60355 * 20 19 18 22 22 O 1.38828 * 132.15087 * 152.43500 * 20 19 18 23 23 H 1.08999 * 109.46994 * 275.13075 * 1 2 3 24 24 H 1.08997 * 109.46975 * 35.12627 * 1 2 3 25 25 H 1.08998 * 109.47284 * 155.12341 * 1 2 3 26 26 H 0.97001 * 119.99678 * 180.02562 * 6 5 3 27 27 H 1.09006 * 109.47191 * 329.99777 * 11 2 1 28 28 H 1.09006 * 109.46771 * 210.00261 * 11 2 1 29 29 H 1.08992 * 110.79035 * 4.16611 * 14 12 11 30 30 H 1.09003 * 110.78976 * 127.43551 * 14 12 11 31 31 H 1.08997 * 110.84219 * 268.23137 * 17 15 14 32 32 H 1.09004 * 110.84205 * 31.83961 * 17 15 14 33 33 H 1.09005 * 110.17108 * 93.73962 * 18 17 15 34 34 H 1.09005 * 110.17556 * 215.54317 * 18 17 15 35 35 H 1.08995 * 110.46582 * 113.05566 * 19 18 17 36 36 H 1.08999 * 110.46568 * 235.64478 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1656 1.2228 -0.3646 5 6 1.5381 2.3405 0.4686 6 7 0.4118 2.2605 1.1449 7 14 2.3135 4.0078 0.1393 8 1 1.7948 4.5505 -1.1420 9 1 1.9736 4.9388 1.2451 10 1 3.7886 3.8593 0.0530 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5112 -1.7549 -1.9910 14 6 3.1467 -3.1042 -1.4593 15 6 4.5171 -2.7853 -2.0394 16 1 5.2279 -2.4948 -1.2658 17 6 5.1494 -3.7094 -3.0724 18 6 6.0153 -2.7221 -3.9157 19 6 5.3427 -1.3250 -3.7588 20 6 4.1006 -1.5792 -2.9607 21 1 3.3925 -2.0065 -3.6708 22 8 3.3675 -0.7765 -2.0971 23 1 -0.3633 0.0919 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0158 3.0674 1.4720 27 1 1.6083 -2.0287 0.5130 28 1 3.1499 -1.1387 0.5134 29 1 3.2376 -3.5028 -0.4490 30 1 2.6042 -3.7991 -2.1004 31 1 5.7759 -4.4596 -2.5899 32 1 4.3852 -4.1803 -3.6909 33 1 7.0349 -2.6937 -3.5312 34 1 6.0162 -3.0233 -4.9633 35 1 5.9933 -0.6490 -3.2040 36 1 5.1009 -0.9065 -4.7358 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720865880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:42 Heat of formation + Delta-G solvation = -10.292031 kcal Electronic energy + Delta-G solvation = -16283.938724 eV Core-core repulsion = 13769.234700 eV Total energy + Delta-G solvation = -2514.704024 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.35123 -36.13037 -34.86181 -32.04328 -30.80173 -27.98626 -27.57888 -25.73429 -24.44538 -21.62056 -20.49417 -20.08531 -19.93767 -16.62008 -16.39596 -15.23055 -15.06191 -14.57530 -14.27397 -13.99576 -13.29863 -13.00263 -12.73562 -12.24440 -12.16265 -11.60635 -11.30243 -11.21211 -11.14432 -10.82278 -10.67452 -10.57304 -10.46621 -10.26881 -10.18327 -9.86296 -9.73882 -9.63985 -8.89337 -8.37815 -6.59638 -5.56877 -3.01986 3.49480 3.54851 3.57836 3.76022 4.61494 4.66107 4.77809 4.94130 5.19295 5.25475 5.28776 5.47071 5.54129 5.61345 5.63027 5.77880 5.79515 5.87317 5.95311 6.01477 6.07810 6.15944 6.23498 6.32825 6.41304 6.50998 6.63052 6.80322 6.92390 7.46293 7.64903 7.81781 8.04530 8.56408 9.40264 10.02243 10.50741 11.48778 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.007752 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.192892 B = 3610.892333 C = 4212.349595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.598 5.598 3 C -0.234 4.234 4 H 0.073 0.927 5 C -0.006 4.006 6 N -0.916 5.916 7 Si 0.904 3.096 8 H -0.290 1.290 9 H -0.293 1.293 10 H -0.280 1.280 11 C 0.153 3.847 12 C 0.059 3.941 13 H 0.063 0.937 14 C -0.138 4.138 15 C -0.149 4.149 16 H 0.087 0.913 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.102 4.102 20 C 0.062 3.938 21 H 0.024 0.976 22 O -0.322 6.322 23 H 0.031 0.969 24 H 0.040 0.960 25 H -0.005 1.005 26 H 0.249 0.751 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -12.055 -8.058 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.320 5.320 3 C -0.364 4.364 4 H 0.091 0.909 5 C -0.203 4.203 6 N -0.562 5.562 7 Si 0.735 3.265 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.025 3.975 12 C -0.001 4.001 13 H 0.081 0.919 14 C -0.176 4.176 15 C -0.168 4.168 16 H 0.105 0.895 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.139 4.139 20 C 0.001 3.999 21 H 0.042 0.958 22 O -0.240 6.240 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.589 -11.672 -7.934 16.024 hybrid contribution 0.211 0.768 -0.283 0.845 sum 7.801 -10.904 -8.217 15.725 Atomic orbital electron populations 1.20809 0.82831 0.95245 0.99436 1.43863 1.01655 1.00761 1.85672 1.19308 0.98324 0.85226 1.33537 0.90888 1.25010 0.98097 0.98433 0.98748 1.70077 1.19794 1.26829 1.39513 0.86244 0.78811 0.84313 0.77173 1.21730 1.22006 1.20517 1.20901 0.96650 0.89048 0.90882 1.24710 0.91542 0.85785 0.98013 0.91906 1.22536 0.95648 0.97828 1.01638 1.23181 0.97045 0.98383 0.98206 0.89477 1.21964 0.98972 0.96893 0.96895 1.22805 0.99055 0.93562 0.99946 1.21394 0.95634 0.97681 0.99215 1.21790 0.94536 0.90412 0.93116 0.95774 1.88567 1.50586 1.29714 1.55178 0.95028 0.94098 0.98669 0.94052 0.93115 0.92755 0.90636 0.91502 0.91605 0.91508 0.91324 0.91608 0.91096 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 8.98 59.85 0.54 4.69 16 2 N -0.60 -15.86 2.91 -181.12 -0.53 -16.39 16 3 C -0.23 -6.84 9.28 -15.06 -0.14 -6.98 16 4 H 0.07 2.16 7.62 -52.49 -0.40 1.76 16 5 C -0.01 -0.18 5.10 -17.43 -0.09 -0.27 16 6 N -0.92 -27.92 10.71 55.49 0.59 -27.32 16 7 Si 0.90 23.22 29.57 -169.99 -5.03 18.19 16 8 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 9 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 C 0.15 3.30 5.19 -4.05 -0.02 3.28 16 12 C 0.06 1.12 3.56 -25.26 -0.09 1.03 16 13 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.14 -1.99 6.27 -25.67 -0.16 -2.15 16 15 C -0.15 -2.08 3.46 -88.98 -0.31 -2.39 16 16 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 17 C -0.11 -1.19 6.52 -25.42 -0.17 -1.35 16 18 C -0.12 -1.19 6.95 -23.57 -0.16 -1.36 16 19 C -0.10 -1.33 6.66 -26.79 -0.18 -1.51 16 20 C 0.06 1.00 3.60 -25.92 -0.09 0.91 16 21 H 0.02 0.39 7.56 -51.93 -0.39 0.00 16 22 O -0.32 -6.82 10.57 -29.35 -0.31 -7.13 16 23 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 24 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 25 H -0.01 -0.12 8.03 -51.93 -0.42 -0.53 16 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 28 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 29 H 0.07 1.01 7.75 -51.93 -0.40 0.61 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -31.92 283.99 -8.01 -39.93 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: -6.15 Total: -5.46 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -0.87 Total: -6.10 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.07 Total: -43.71 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.31 Total: -7.13 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.03 Total: 18.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.92 -8.01 -39.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720865880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.638 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds