Wall clock time and date at job start Mon Mar 30 2020 03:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36934 * 120.00345 * 2 1 4 4 H 1.07996 * 119.99926 * 202.94696 * 3 2 1 5 5 C 1.38812 * 119.99838 * 22.94043 * 3 2 1 6 6 N 1.31622 * 119.99945 * 13.09621 * 5 3 2 7 7 Si 1.86803 * 119.99969 * 193.09240 * 5 3 2 8 8 H 1.48505 * 109.46939 * 90.00147 * 7 5 3 9 9 H 1.48501 * 109.47173 * 210.00302 * 7 5 3 10 10 H 1.48505 * 109.47079 * 330.00322 * 7 5 3 11 11 C 1.46500 * 119.99610 * 180.02562 * 2 1 3 12 12 C 1.52992 * 109.47376 * 89.99857 * 11 2 1 13 13 H 1.08995 * 109.99445 * 305.12118 * 12 11 2 14 14 C 1.55768 * 110.00642 * 183.75103 * 12 11 2 15 15 C 1.52193 * 102.57979 * 245.89392 * 14 12 11 16 16 H 1.09002 * 111.87000 * 87.69663 * 15 14 12 17 17 C 1.52342 * 120.33851 * 222.10242 * 15 14 12 18 18 C 1.56069 * 102.29160 * 150.03218 * 17 15 14 19 19 C 1.55842 * 105.86141 * 334.64603 * 18 17 15 20 20 C 1.49817 * 105.03303 * 355.42479 * 19 18 17 21 21 H 1.09007 * 104.95247 * 282.60355 * 20 19 18 22 22 O 1.38828 * 132.15087 * 152.43500 * 20 19 18 23 23 H 1.08999 * 109.46994 * 275.13075 * 1 2 3 24 24 H 1.08997 * 109.46975 * 35.12627 * 1 2 3 25 25 H 1.08998 * 109.47284 * 155.12341 * 1 2 3 26 26 H 0.97001 * 119.99678 * 180.02562 * 6 5 3 27 27 H 1.09006 * 109.47191 * 329.99777 * 11 2 1 28 28 H 1.09006 * 109.46771 * 210.00261 * 11 2 1 29 29 H 1.08992 * 110.79035 * 4.16611 * 14 12 11 30 30 H 1.09003 * 110.78976 * 127.43551 * 14 12 11 31 31 H 1.08997 * 110.84219 * 268.23137 * 17 15 14 32 32 H 1.09004 * 110.84205 * 31.83961 * 17 15 14 33 33 H 1.09005 * 110.17108 * 93.73962 * 18 17 15 34 34 H 1.09005 * 110.17556 * 215.54317 * 18 17 15 35 35 H 1.08995 * 110.46582 * 113.05566 * 19 18 17 36 36 H 1.08999 * 110.46568 * 235.64478 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1656 1.2228 -0.3646 5 6 1.5381 2.3405 0.4686 6 7 0.4118 2.2605 1.1449 7 14 2.3135 4.0078 0.1393 8 1 1.7948 4.5505 -1.1420 9 1 1.9736 4.9388 1.2451 10 1 3.7886 3.8593 0.0530 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 1 1.5112 -1.7549 -1.9910 14 6 3.1467 -3.1042 -1.4593 15 6 4.5171 -2.7853 -2.0394 16 1 5.2279 -2.4948 -1.2658 17 6 5.1494 -3.7094 -3.0724 18 6 6.0153 -2.7221 -3.9157 19 6 5.3427 -1.3250 -3.7588 20 6 4.1006 -1.5792 -2.9607 21 1 3.3925 -2.0065 -3.6708 22 8 3.3675 -0.7765 -2.0971 23 1 -0.3633 0.0919 1.0235 24 1 -0.3633 0.8405 -0.5913 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0158 3.0674 1.4720 27 1 1.6083 -2.0287 0.5130 28 1 3.1499 -1.1387 0.5134 29 1 3.2376 -3.5028 -0.4490 30 1 2.6042 -3.7991 -2.1004 31 1 5.7759 -4.4596 -2.5899 32 1 4.3852 -4.1803 -3.6909 33 1 7.0349 -2.6937 -3.5312 34 1 6.0162 -3.0233 -4.9633 35 1 5.9933 -0.6490 -3.2040 36 1 5.1009 -0.9065 -4.7358 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720865880.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:41 Heat of formation + Delta-G solvation = -29.832768 kcal Electronic energy + Delta-G solvation = -16284.786074 eV Core-core repulsion = 13769.234700 eV Total energy + Delta-G solvation = -2515.551374 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.60779 -37.71855 -36.47674 -33.74332 -32.52466 -29.50313 -28.63603 -27.88154 -25.97615 -23.29406 -22.01147 -21.30231 -21.05272 -18.74053 -17.69342 -16.97821 -16.38041 -16.21470 -15.56024 -15.30549 -15.08166 -14.85485 -14.32700 -13.57578 -13.25960 -13.13494 -13.01034 -12.84426 -12.68267 -12.41116 -12.29965 -12.14686 -11.98150 -11.91491 -11.56281 -11.48903 -11.37981 -11.03645 -10.61794 -10.24367 -8.73487 -7.80086 -5.27729 1.42791 1.44853 1.54176 2.50721 2.56178 3.31408 3.52105 3.65674 3.84060 3.91262 4.12120 4.18341 4.25439 4.45322 4.47570 4.48032 4.59854 4.68008 4.80611 4.82211 4.91808 4.95155 5.05274 5.09158 5.17148 5.26552 5.29542 5.35275 5.37044 5.50848 5.66917 5.73083 6.28219 6.39532 7.18801 7.90140 8.32283 9.23113 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.035697 B = 0.007752 C = 0.006646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.192892 B = 3610.892333 C = 4212.349595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.617 5.617 3 C -0.240 4.240 4 H 0.062 0.938 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.965 3.035 8 H -0.289 1.289 9 H -0.290 1.290 10 H -0.272 1.272 11 C 0.151 3.849 12 C 0.061 3.939 13 H 0.053 0.947 14 C -0.127 4.127 15 C -0.141 4.141 16 H 0.076 0.924 17 C -0.103 4.103 18 C -0.108 4.108 19 C -0.104 4.104 20 C 0.039 3.961 21 H 0.024 0.976 22 O -0.368 6.368 23 H 0.009 0.991 24 H 0.010 0.990 25 H 0.032 0.968 26 H 0.247 0.753 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.036 -13.851 -9.144 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.339 5.339 3 C -0.371 4.371 4 H 0.080 0.920 5 C -0.254 4.254 6 N -0.591 5.591 7 Si 0.794 3.206 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.197 1.197 11 C 0.024 3.976 12 C 0.001 3.999 13 H 0.071 0.929 14 C -0.165 4.165 15 C -0.160 4.160 16 H 0.094 0.906 17 C -0.140 4.140 18 C -0.145 4.145 19 C -0.142 4.142 20 C -0.020 4.020 21 H 0.042 0.958 22 O -0.287 6.287 23 H 0.027 0.973 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.077 0.923 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.943 -13.507 -9.034 18.548 hybrid contribution -0.192 1.287 0.030 1.302 sum 8.751 -12.220 -9.004 17.520 Atomic orbital electron populations 1.20560 0.82784 0.95830 0.97771 1.44101 1.02054 1.01802 1.85984 1.19441 0.98066 0.86771 1.32815 0.92004 1.25739 0.98914 1.01640 0.99101 1.70223 1.20974 1.27311 1.40581 0.85286 0.78294 0.80236 0.76808 1.21651 1.21664 1.19738 1.21114 0.95871 0.87616 0.92956 1.24514 0.91779 0.88024 0.95543 0.92868 1.22479 0.95638 0.95214 1.03136 1.23168 0.96627 0.98088 0.98083 0.90582 1.21989 0.99333 0.96720 0.95973 1.22804 0.99161 0.91218 1.01329 1.21541 0.94220 0.99684 0.98761 1.22172 0.95433 0.91004 0.93411 0.95804 1.88494 1.51687 1.32057 1.56453 0.97276 0.97087 0.94924 0.94419 0.90727 0.93912 0.89334 0.89166 0.89556 0.90526 0.90071 0.89507 0.92275 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.15 8.98 127.77 1.15 10.30 16 2 N -0.62 -33.14 2.91 -726.94 -2.12 -35.26 16 3 C -0.24 -14.32 9.28 84.03 0.78 -13.54 16 4 H 0.06 3.76 7.62 -2.91 -0.02 3.73 16 5 C -0.06 -3.61 5.10 84.86 0.43 -3.17 16 6 N -0.94 -58.73 10.71 21.65 0.23 -58.50 16 7 Si 0.96 48.53 29.57 68.60 2.03 50.56 16 8 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 9 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 10 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 11 C 0.15 6.43 5.19 86.38 0.45 6.88 16 12 C 0.06 2.25 3.56 31.55 0.11 2.36 16 13 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 14 C -0.13 -3.33 6.27 31.28 0.20 -3.14 16 15 C -0.14 -3.60 3.46 -9.73 -0.03 -3.63 16 16 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.10 -1.83 6.52 31.44 0.21 -1.62 16 18 C -0.11 -1.85 6.95 32.64 0.23 -1.62 16 19 C -0.10 -2.59 6.66 30.56 0.20 -2.38 16 20 C 0.04 1.24 3.60 31.12 0.11 1.35 16 21 H 0.02 0.74 7.56 -2.38 -0.02 0.72 16 22 O -0.37 -15.69 10.57 -127.93 -1.35 -17.04 16 23 H 0.01 0.51 7.34 -2.39 -0.02 0.49 16 24 H 0.01 0.60 7.34 -2.39 -0.02 0.58 16 25 H 0.03 1.42 8.03 -2.39 -0.02 1.40 16 26 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.07 2.78 8.07 -2.38 -0.02 2.76 16 28 H 0.04 1.90 8.04 -2.38 -0.02 1.88 16 29 H 0.09 2.11 7.75 -2.39 -0.02 2.09 16 30 H 0.09 1.98 8.13 -2.39 -0.02 1.96 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -70.06 283.99 3.64 -66.42 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.02 Total: 2.03 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 3.83 Total: -8.22 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -1.89 Total: -93.75 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.35 Total: -17.04 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 2.03 Total: 50.56 kcal Total: -70.06 3.64 -66.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720865880.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.585 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds