Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46805 * 2 1 4 4 C 1.42901 * 113.99815 * 180.02562 * 3 2 1 5 5 C 1.53886 * 113.58573 * 209.99912 * 4 3 2 6 6 C 1.53260 * 86.88178 * 220.34336 * 5 4 3 7 7 C 1.52458 * 128.58714 * 245.05181 * 6 5 4 8 8 C 1.52462 * 128.58486 * 165.10895 * 6 5 4 9 9 H 1.08998 * 117.54835 * 10.16795 * 8 6 5 10 10 N 1.46904 * 117.51164 * 225.05369 * 8 6 5 11 11 C 1.46899 * 111.00029 * 155.14749 * 10 8 6 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.53255 * 87.69294 * 25.08338 * 6 5 4 21 21 H 1.08997 * 109.46986 * 60.00584 * 1 2 3 22 22 H 1.09002 * 109.46430 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47041 * 300.00408 * 1 2 3 24 24 H 1.08993 * 109.47503 * 239.99623 * 2 1 3 25 25 H 1.09005 * 109.46733 * 119.99568 * 2 1 3 26 26 H 1.09004 * 112.83056 * 341.10747 * 4 3 2 27 27 H 1.09001 * 113.64769 * 105.85219 * 5 4 3 28 28 H 1.08993 * 113.64985 * 334.84042 * 5 4 3 29 29 H 1.09005 * 117.50876 * 134.94655 * 7 6 5 30 30 H 1.08996 * 117.51327 * 349.85269 * 7 6 5 31 31 H 1.00902 * 111.00190 * 31.18450 * 10 8 6 32 32 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 33 33 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 34 34 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.64768 * 89.41282 * 20 6 5 36 36 H 1.08997 * 113.65052 * 220.41773 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9485 2.7263 0.7045 6 6 4.9784 2.8331 -0.4254 7 6 6.4961 2.7140 -0.3431 8 6 5.8517 4.0233 -0.8066 9 1 5.8792 4.8690 -0.1194 10 7 5.9526 4.3619 -2.2325 11 6 6.2929 5.7793 -2.4142 12 6 6.3881 6.0883 -3.8862 13 1 6.2137 5.3096 -4.6138 14 6 6.6989 7.3650 -4.3038 15 7 6.7815 7.6348 -5.5884 16 14 7.0013 8.7119 -3.0452 17 1 8.4432 8.7440 -2.6913 18 1 6.6028 10.0228 -3.6177 19 1 6.1983 8.4395 -1.8261 20 6 4.0038 2.0422 -1.3048 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9277 0.5460 0.3244 27 1 4.3905 2.5327 1.6819 28 1 3.2284 3.5443 0.7185 29 1 6.9948 2.1039 -1.0963 30 1 6.9468 2.6982 0.6492 31 1 5.1008 4.1290 -2.7207 32 1 5.5193 6.3996 -1.9617 33 1 7.2506 5.9871 -1.9370 34 1 7.0005 8.5329 -5.8822 35 1 3.2990 2.6699 -1.8501 36 1 4.4899 1.3003 -1.9382 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721158647.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = -0.984586 kcal Electronic energy + Delta-G solvation = -15171.745069 eV Core-core repulsion = 12657.444646 eV Total energy + Delta-G solvation = -2514.300423 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.76377 -37.38576 -34.76215 -32.78441 -31.43682 -30.46472 -26.67756 -25.67103 -23.05414 -22.49628 -21.46940 -20.57431 -18.23438 -17.14727 -16.55792 -15.82138 -15.45748 -14.95350 -14.46916 -14.04245 -13.64586 -13.34605 -12.97948 -12.67145 -12.41920 -12.29152 -11.93180 -11.79893 -11.58856 -11.31291 -11.11440 -10.78012 -10.68210 -10.36138 -10.23569 -9.78761 -9.44993 -9.34535 -9.22900 -8.58471 -7.39042 -6.05792 -4.04007 3.29671 3.36545 3.39094 3.56149 4.09109 4.41970 4.45261 4.70110 4.77064 4.89282 4.92974 5.01814 5.05248 5.17450 5.27067 5.28024 5.46395 5.71000 5.71899 5.76601 5.87440 5.90458 5.92919 6.03232 6.12801 6.21653 6.35025 6.42539 6.79122 7.02180 7.23420 7.60531 7.91232 8.31444 8.64471 9.01737 9.55861 11.07473 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.004823 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.903719 B = 5803.944979 C = 6044.596721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.068 3.932 5 C -0.094 4.094 6 C -0.180 4.180 7 C -0.143 4.143 8 C 0.049 3.951 9 H 0.092 0.908 10 N -0.647 5.647 11 C 0.165 3.835 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.900 5.900 16 Si 0.878 3.122 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 C -0.108 4.108 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.339 0.661 32 H -0.014 1.014 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.283 -13.790 13.709 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.010 3.990 5 C -0.132 4.132 6 C -0.182 4.182 7 C -0.181 4.181 8 C -0.062 4.062 9 H 0.110 0.890 10 N -0.277 5.277 11 C 0.037 3.963 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.539 5.539 16 Si 0.706 3.294 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.192 1.192 20 C -0.145 4.145 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.158 0.842 32 H 0.004 0.996 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.724 -13.672 13.491 20.703 hybrid contribution -0.365 0.982 0.768 1.299 sum -8.088 -12.690 14.259 20.731 Atomic orbital electron populations 1.21750 0.93990 1.02029 1.03146 1.22477 0.95463 0.84318 0.99832 1.87958 1.21060 1.25927 1.94641 1.23571 0.80318 0.97682 0.97441 1.22715 0.96402 0.97442 0.96594 1.22240 0.91846 1.04796 0.99283 1.23047 0.91328 1.01990 1.01737 1.22362 1.00734 0.90680 0.92435 0.89045 1.60214 1.38970 1.23163 1.05401 1.20062 0.94874 0.83316 0.98019 1.21049 1.47862 0.96408 0.90245 0.90306 1.24898 0.94878 0.98367 0.95143 1.69900 1.49055 1.21056 1.13876 0.86809 0.79020 0.81550 0.82058 1.20110 1.21186 1.19245 1.22868 0.96782 0.98701 0.96175 0.91767 0.91326 0.91980 0.93418 0.93664 0.89700 0.91304 0.89141 0.88227 0.89214 0.84169 0.99615 0.95812 0.92622 0.89036 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.53 6.50 37.16 0.24 0.78 16 3 O -0.38 -4.78 10.36 -35.23 -0.36 -5.15 16 4 C 0.07 0.81 4.31 -25.81 -0.11 0.70 16 5 C -0.09 -1.18 7.93 -26.14 -0.21 -1.39 16 6 C -0.18 -2.59 2.98 -154.80 -0.46 -3.05 16 7 C -0.14 -2.08 10.46 -26.95 -0.28 -2.37 16 8 C 0.05 0.86 6.26 -67.93 -0.42 0.44 16 9 H 0.09 1.60 7.90 -51.93 -0.41 1.19 16 10 N -0.65 -13.81 6.73 -108.22 -0.73 -14.54 16 11 C 0.16 4.10 4.36 -4.98 -0.02 4.08 16 12 C -0.52 -15.06 9.87 -34.44 -0.34 -15.40 16 13 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 16 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 C -0.11 -1.47 7.43 -26.14 -0.19 -1.67 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.34 7.10 8.23 -39.29 -0.32 6.77 16 32 H -0.01 -0.34 7.20 -51.93 -0.37 -0.72 16 33 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -31.00 299.81 -8.14 -39.14 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.15 Total: 2.83 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.52 Total: -16.79 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.04 Total: -41.70 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: -0.36 Total: -5.15 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.00 -8.14 -39.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721158647.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.152 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds