Wall clock time and date at job start Mon Mar 30 2020 03:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46805 * 2 1 4 4 C 1.42901 * 113.99815 * 180.02562 * 3 2 1 5 5 C 1.53886 * 113.58573 * 209.99912 * 4 3 2 6 6 C 1.53260 * 86.88178 * 220.34336 * 5 4 3 7 7 C 1.52458 * 128.58714 * 245.05181 * 6 5 4 8 8 C 1.52462 * 128.58486 * 165.10895 * 6 5 4 9 9 H 1.08998 * 117.54835 * 10.16795 * 8 6 5 10 10 N 1.46904 * 117.51164 * 225.05369 * 8 6 5 11 11 C 1.46899 * 111.00029 * 155.14749 * 10 8 6 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99923 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00006 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47093 * 90.00088 * 16 14 12 18 18 H 1.48495 * 109.46891 * 210.00496 * 16 14 12 19 19 H 1.48504 * 109.47189 * 330.00185 * 16 14 12 20 20 C 1.53255 * 87.69294 * 25.08338 * 6 5 4 21 21 H 1.08997 * 109.46986 * 60.00584 * 1 2 3 22 22 H 1.09002 * 109.46430 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47041 * 300.00408 * 1 2 3 24 24 H 1.08993 * 109.47503 * 239.99623 * 2 1 3 25 25 H 1.09005 * 109.46733 * 119.99568 * 2 1 3 26 26 H 1.09004 * 112.83056 * 341.10747 * 4 3 2 27 27 H 1.09001 * 113.64769 * 105.85219 * 5 4 3 28 28 H 1.08993 * 113.64985 * 334.84042 * 5 4 3 29 29 H 1.09005 * 117.50876 * 134.94655 * 7 6 5 30 30 H 1.08996 * 117.51327 * 349.85269 * 7 6 5 31 31 H 1.00902 * 111.00190 * 31.18450 * 10 8 6 32 32 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 33 33 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 34 34 H 0.97000 * 119.99684 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.64768 * 89.41282 * 20 6 5 36 36 H 1.08997 * 113.65052 * 220.41773 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9485 2.7263 0.7045 6 6 4.9784 2.8331 -0.4254 7 6 6.4961 2.7140 -0.3431 8 6 5.8517 4.0233 -0.8066 9 1 5.8792 4.8690 -0.1194 10 7 5.9526 4.3619 -2.2325 11 6 6.2929 5.7793 -2.4142 12 6 6.3881 6.0883 -3.8862 13 1 6.2137 5.3096 -4.6138 14 6 6.6989 7.3650 -4.3038 15 7 6.7815 7.6348 -5.5884 16 14 7.0013 8.7119 -3.0452 17 1 8.4432 8.7440 -2.6913 18 1 6.6028 10.0228 -3.6177 19 1 6.1983 8.4395 -1.8261 20 6 4.0038 2.0422 -1.3048 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9277 0.5460 0.3244 27 1 4.3905 2.5327 1.6819 28 1 3.2284 3.5443 0.7185 29 1 6.9948 2.1039 -1.0963 30 1 6.9468 2.6982 0.6492 31 1 5.1008 4.1290 -2.7207 32 1 5.5193 6.3996 -1.9617 33 1 7.2506 5.9871 -1.9370 34 1 7.0005 8.5329 -5.8822 35 1 3.2990 2.6699 -1.8501 36 1 4.4899 1.3003 -1.9382 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721158647.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:48 Heat of formation + Delta-G solvation = -22.173761 kcal Electronic energy + Delta-G solvation = -15172.663901 eV Core-core repulsion = 12657.444646 eV Total energy + Delta-G solvation = -2515.219255 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.84737 -38.43565 -36.31793 -34.62715 -32.92983 -31.41572 -28.65414 -26.74074 -23.81301 -23.63586 -23.25083 -22.00788 -19.50160 -18.80951 -17.89134 -16.88189 -16.63796 -16.37697 -16.04159 -15.46147 -14.94859 -14.68685 -14.56881 -13.91023 -13.77960 -13.41591 -13.17027 -12.96286 -12.76134 -12.62749 -12.46231 -12.19482 -11.96141 -11.93006 -11.64745 -11.41848 -11.21751 -10.82969 -10.57770 -10.34373 -9.02311 -8.32711 -6.37978 1.33851 1.35652 1.46783 2.32335 2.62611 2.96225 3.01239 3.20237 3.66482 3.69691 3.82134 3.92219 4.11985 4.22404 4.32836 4.43920 4.52831 4.58228 4.74730 4.77725 4.81820 4.86606 4.91794 4.98948 5.05299 5.06263 5.17242 5.20284 5.27481 5.36534 5.48816 5.96530 6.38681 6.50191 6.62310 6.71732 7.27139 8.84095 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.041172 B = 0.004823 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.903719 B = 5803.944979 C = 6044.596721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.398 6.398 4 C 0.079 3.921 5 C -0.089 4.089 6 C -0.167 4.167 7 C -0.124 4.124 8 C 0.012 3.988 9 H 0.092 0.908 10 N -0.657 5.657 11 C 0.178 3.822 12 C -0.532 4.532 13 H 0.036 0.964 14 C 0.009 3.991 15 N -0.946 5.946 16 Si 0.954 3.046 17 H -0.263 1.263 18 H -0.279 1.279 19 H -0.252 1.252 20 C -0.117 4.117 21 H 0.052 0.948 22 H 0.090 0.910 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.334 0.666 32 H -0.013 1.013 33 H 0.026 0.974 34 H 0.269 0.731 35 H 0.073 0.927 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.317 -14.460 16.482 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.318 6.318 4 C 0.021 3.979 5 C -0.127 4.127 6 C -0.168 4.168 7 C -0.162 4.162 8 C -0.098 4.098 9 H 0.110 0.890 10 N -0.286 5.286 11 C 0.049 3.951 12 C -0.571 4.571 13 H 0.054 0.946 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.777 3.223 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.176 1.176 20 C -0.155 4.155 21 H 0.072 0.928 22 H 0.109 0.891 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.136 0.864 31 H 0.153 0.847 32 H 0.004 0.996 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.764 -14.373 16.281 23.064 hybrid contribution -0.406 1.079 -0.173 1.165 sum -8.170 -13.294 16.109 22.427 Atomic orbital electron populations 1.21776 0.93191 1.03327 1.02504 1.22719 0.96224 0.83086 1.00861 1.87938 1.21239 1.27993 1.94633 1.23508 0.80464 0.98309 0.95617 1.22711 0.95442 0.97439 0.97087 1.22312 0.92277 1.01986 1.00274 1.23090 0.91503 0.98851 1.02722 1.22446 1.05138 0.92241 0.90012 0.88987 1.60132 1.39147 1.20880 1.08444 1.19780 0.94907 0.85518 0.94860 1.21323 1.47962 0.95785 0.91988 0.94605 1.25896 0.94337 1.01234 0.97436 1.70052 1.50205 1.22077 1.16325 0.85618 0.79598 0.77735 0.79378 1.18831 1.20429 1.17593 1.22928 0.96678 0.98702 0.97170 0.92850 0.89083 0.92171 0.93014 0.91921 0.87385 0.88918 0.90100 0.88833 0.86360 0.84694 0.99577 0.95559 0.92231 0.90842 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 2 C 0.05 0.80 6.50 71.98 0.47 1.27 16 3 O -0.40 -9.42 10.36 -148.98 -1.54 -10.97 16 4 C 0.08 1.71 4.31 31.19 0.13 1.85 16 5 C -0.09 -2.02 7.93 30.98 0.25 -1.77 16 6 C -0.17 -4.50 2.98 -52.37 -0.16 -4.66 16 7 C -0.12 -3.31 10.46 30.45 0.32 -2.99 16 8 C 0.01 0.42 6.26 44.77 0.28 0.70 16 9 H 0.09 3.10 7.90 -2.39 -0.02 3.08 16 10 N -0.66 -28.31 6.73 -496.29 -3.34 -31.65 16 11 C 0.18 8.86 4.36 85.56 0.37 9.24 16 12 C -0.53 -31.91 9.87 25.60 0.25 -31.66 16 13 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 14 C 0.01 0.52 5.47 84.65 0.46 0.98 16 15 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 16 Si 0.95 44.88 27.47 68.60 1.88 46.77 16 17 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 20 C -0.12 -3.11 7.43 30.98 0.23 -2.88 16 21 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.11 1.87 7.87 -2.39 -0.02 1.85 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.33 14.50 8.23 -89.69 -0.74 13.76 16 32 H -0.01 -0.66 7.20 -2.39 -0.02 -0.68 16 33 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 34 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -67.93 299.81 0.89 -67.03 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.25 Total: 20.08 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.35 Total: -31.38 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.04 Total: -91.53 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -1.54 Total: -10.97 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.77 kcal Total: -67.93 0.89 -67.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721158647.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.860 kcal (2) G-P(sol) polarization free energy of solvation -67.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds