Wall clock time and date at job start Mon Mar 30 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.42901 * 113.99948 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58961 * 247.66621 * 4 3 2 6 6 C 1.53256 * 86.88288 * 220.42739 * 5 4 3 7 7 C 1.52456 * 128.58181 * 165.11022 * 6 5 4 8 8 C 1.52453 * 128.58367 * 245.05386 * 6 5 4 9 9 H 1.09007 * 117.51452 * 349.89424 * 8 6 5 10 10 N 1.46896 * 117.51457 * 134.94998 * 8 6 5 11 11 C 1.46906 * 111.00432 * 205.00087 * 10 8 6 12 12 C 1.50700 * 109.47261 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99855 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99783 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99712 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00218 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46846 * 90.00008 * 16 14 12 18 18 H 1.48501 * 109.47242 * 209.99963 * 16 14 12 19 19 H 1.48492 * 109.47023 * 330.00035 * 16 14 12 20 20 C 1.53257 * 87.69116 * 25.08102 * 6 5 4 21 21 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 22 22 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 26 26 H 1.08999 * 112.82755 * 18.88312 * 4 3 2 27 27 H 1.08997 * 113.64431 * 334.92876 * 5 4 3 28 28 H 1.08998 * 113.64569 * 105.92779 * 5 4 3 29 29 H 1.09001 * 117.51300 * 225.05030 * 7 6 5 30 30 H 1.09003 * 117.51492 * 10.15709 * 7 6 5 31 31 H 1.00899 * 110.99962 * 328.95653 * 10 8 6 32 32 H 1.08997 * 109.46952 * 300.00037 * 11 10 8 33 33 H 1.08998 * 109.47047 * 60.00186 * 11 10 8 34 34 H 0.97003 * 120.00046 * 179.97438 * 15 14 12 35 35 H 1.09006 * 113.64309 * 220.41332 * 20 6 5 36 36 H 1.09001 * 113.64463 * 89.41989 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0031 2.0428 1.3038 6 6 4.9775 2.8341 0.4246 7 6 5.8499 4.0249 0.8058 8 6 6.4952 2.7158 0.3428 9 1 6.9940 2.1056 1.0959 10 7 7.1032 2.6946 -0.9942 11 6 8.4027 2.0099 -0.9710 12 6 8.9942 2.0075 -2.3571 13 1 8.4585 2.4689 -3.1735 14 6 10.2196 1.4173 -2.5826 15 7 10.7360 1.4157 -3.7922 16 14 11.1464 0.6199 -1.1703 17 1 10.7557 -0.8091 -1.0661 18 1 12.6071 0.7168 -1.4194 19 1 10.8130 1.3179 0.0972 20 6 3.9481 2.7263 -0.7057 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.9274 0.5459 -0.3261 27 1 3.2977 2.6701 1.8488 28 1 4.4895 1.3012 1.9375 29 1 5.8765 4.8702 0.1182 30 1 5.9243 4.2763 1.8639 31 1 6.4827 2.2698 -1.6669 32 1 9.0755 2.5304 -0.2894 33 1 8.2661 0.9827 -0.6329 34 1 11.5983 1.0007 -3.9509 35 1 4.3905 2.5328 -1.6829 36 1 3.2274 3.5440 -0.7201 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721158651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:50 Heat of formation + Delta-G solvation = -1.055596 kcal Electronic energy + Delta-G solvation = -15253.501703 eV Core-core repulsion = 12739.198201 eV Total energy + Delta-G solvation = -2514.303502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77200 -37.37667 -34.73109 -32.80384 -31.46812 -30.48436 -26.75355 -25.65836 -23.03892 -22.20497 -21.62143 -20.70297 -18.27161 -16.92303 -16.69146 -15.78077 -15.57130 -14.95657 -14.54666 -13.98955 -13.56220 -13.37589 -13.02982 -12.59662 -12.33921 -12.25295 -12.06401 -11.98050 -11.56791 -11.29964 -11.11039 -10.81569 -10.61756 -10.34390 -10.14187 -9.85210 -9.43944 -9.39293 -9.19487 -8.62304 -7.45539 -6.08481 -4.06961 3.26297 3.34207 3.36941 3.58282 4.10550 4.39391 4.44008 4.68965 4.78206 4.91371 4.93268 5.01171 5.15433 5.19781 5.24203 5.29459 5.49293 5.67683 5.72584 5.80110 5.83567 5.90139 5.90446 6.07732 6.15269 6.20559 6.36480 6.44063 6.75720 6.96742 7.24737 7.57862 7.87277 8.26787 8.61123 8.99017 9.52960 11.04753 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.005212 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.244004 B = 5370.624657 C = 5678.369429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.377 6.377 4 C 0.066 3.934 5 C -0.112 4.112 6 C -0.180 4.180 7 C -0.151 4.151 8 C 0.059 3.941 9 H 0.092 0.908 10 N -0.647 5.647 11 C 0.165 3.835 12 C -0.518 4.518 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.878 3.122 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.090 4.090 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.338 0.662 32 H 0.029 0.971 33 H -0.019 1.019 34 H 0.264 0.736 35 H 0.076 0.924 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.531 -1.889 10.239 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.296 6.296 4 C 0.008 3.992 5 C -0.150 4.150 6 C -0.182 4.182 7 C -0.189 4.189 8 C -0.053 4.053 9 H 0.110 0.890 10 N -0.277 5.277 11 C 0.037 3.963 12 C -0.556 4.556 13 H 0.097 0.903 14 C -0.133 4.133 15 N -0.538 5.538 16 Si 0.706 3.294 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.128 4.128 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.158 0.842 32 H 0.047 0.953 33 H -0.001 1.001 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.192 -1.180 10.162 19.153 hybrid contribution 0.562 -1.597 0.788 1.867 sum -15.630 -2.777 10.950 19.285 Atomic orbital electron populations 1.21744 0.94012 1.02050 1.03002 1.22488 0.95381 0.84327 1.00015 1.87925 1.21082 1.25970 1.94654 1.23594 0.80270 0.98221 0.97100 1.22987 0.96953 0.98658 0.96409 1.22251 0.92200 1.04251 0.99465 1.23011 1.02352 0.92799 1.00784 1.22398 0.89236 0.99124 0.94539 0.89019 1.60271 1.05601 1.58836 1.03013 1.20079 0.86750 0.90785 0.98646 1.21043 1.04345 1.36872 0.93386 0.90272 1.24896 0.97127 0.95716 0.95512 1.69900 1.18544 1.44957 1.20403 0.86813 0.79330 0.79976 0.83325 1.20347 1.21081 1.19115 1.22591 0.95809 0.96965 0.97421 0.92000 0.91878 0.91312 0.93583 0.93349 0.89521 0.89267 0.91677 0.88232 0.89280 0.84242 0.95292 1.00140 0.92595 0.90538 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.86 16 2 C 0.05 0.55 6.50 37.16 0.24 0.80 16 3 O -0.38 -4.85 10.35 -35.23 -0.36 -5.21 16 4 C 0.07 0.85 4.31 -25.81 -0.11 0.74 16 5 C -0.11 -1.41 7.93 -26.13 -0.21 -1.62 16 6 C -0.18 -2.59 2.98 -154.80 -0.46 -3.06 16 7 C -0.15 -2.26 10.46 -26.95 -0.28 -2.54 16 8 C 0.06 1.01 6.26 -67.93 -0.43 0.58 16 9 H 0.09 1.57 7.90 -51.93 -0.41 1.16 16 10 N -0.65 -13.55 6.73 -108.22 -0.73 -14.27 16 11 C 0.17 4.03 4.36 -4.97 -0.02 4.01 16 12 C -0.52 -14.89 9.87 -34.44 -0.34 -15.23 16 13 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 14 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 15 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 16 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 20 C -0.09 -1.25 7.75 -26.14 -0.20 -1.45 16 21 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.34 6.86 7.55 -39.29 -0.30 6.57 16 32 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 33 H -0.02 -0.46 7.57 -51.93 -0.39 -0.85 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 298.47 15.07 4.50 4.50 Total: -1.00 -30.48 298.47 -8.09 -38.56 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.07 Total: 3.13 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -1.52 Total: -16.71 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.04 Total: -41.16 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -0.36 Total: -5.21 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.48 -8.09 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721158651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.508 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds