Wall clock time and date at job start Mon Mar 30 2020 03:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.42901 * 113.99948 * 180.02562 * 3 2 1 5 5 C 1.53896 * 113.58961 * 247.66621 * 4 3 2 6 6 C 1.53256 * 86.88288 * 220.42739 * 5 4 3 7 7 C 1.52456 * 128.58181 * 165.11022 * 6 5 4 8 8 C 1.52453 * 128.58367 * 245.05386 * 6 5 4 9 9 H 1.09007 * 117.51452 * 349.89424 * 8 6 5 10 10 N 1.46896 * 117.51457 * 134.94998 * 8 6 5 11 11 C 1.46906 * 111.00432 * 205.00087 * 10 8 6 12 12 C 1.50700 * 109.47261 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99855 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99783 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99712 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00218 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46846 * 90.00008 * 16 14 12 18 18 H 1.48501 * 109.47242 * 209.99963 * 16 14 12 19 19 H 1.48492 * 109.47023 * 330.00035 * 16 14 12 20 20 C 1.53257 * 87.69116 * 25.08102 * 6 5 4 21 21 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 22 22 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 25 25 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 26 26 H 1.08999 * 112.82755 * 18.88312 * 4 3 2 27 27 H 1.08997 * 113.64431 * 334.92876 * 5 4 3 28 28 H 1.08998 * 113.64569 * 105.92779 * 5 4 3 29 29 H 1.09001 * 117.51300 * 225.05030 * 7 6 5 30 30 H 1.09003 * 117.51492 * 10.15709 * 7 6 5 31 31 H 1.00899 * 110.99962 * 328.95653 * 10 8 6 32 32 H 1.08997 * 109.46952 * 300.00037 * 11 10 8 33 33 H 1.08998 * 109.47047 * 60.00186 * 11 10 8 34 34 H 0.97003 * 120.00046 * 179.97438 * 15 14 12 35 35 H 1.09006 * 113.64309 * 220.41332 * 20 6 5 36 36 H 1.09001 * 113.64463 * 89.41989 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.0031 2.0428 1.3038 6 6 4.9775 2.8341 0.4246 7 6 5.8499 4.0249 0.8058 8 6 6.4952 2.7158 0.3428 9 1 6.9940 2.1056 1.0959 10 7 7.1032 2.6946 -0.9942 11 6 8.4027 2.0099 -0.9710 12 6 8.9942 2.0075 -2.3571 13 1 8.4585 2.4689 -3.1735 14 6 10.2196 1.4173 -2.5826 15 7 10.7360 1.4157 -3.7922 16 14 11.1464 0.6199 -1.1703 17 1 10.7557 -0.8091 -1.0661 18 1 12.6071 0.7168 -1.4194 19 1 10.8130 1.3179 0.0972 20 6 3.9481 2.7263 -0.7057 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 3.9274 0.5459 -0.3261 27 1 3.2977 2.6701 1.8488 28 1 4.4895 1.3012 1.9375 29 1 5.8765 4.8702 0.1182 30 1 5.9243 4.2763 1.8639 31 1 6.4827 2.2698 -1.6669 32 1 9.0755 2.5304 -0.2894 33 1 8.2661 0.9827 -0.6329 34 1 11.5983 1.0007 -3.9509 35 1 4.3905 2.5328 -1.6829 36 1 3.2274 3.5440 -0.7201 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721158651.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:50 Heat of formation + Delta-G solvation = -21.533987 kcal Electronic energy + Delta-G solvation = -15254.389713 eV Core-core repulsion = 12739.198201 eV Total energy + Delta-G solvation = -2515.191512 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.88289 -38.44638 -36.28609 -34.61313 -32.97801 -31.42757 -28.70189 -26.74240 -23.81308 -23.54228 -23.20018 -22.15881 -19.62842 -18.66395 -17.84881 -16.95546 -16.77174 -16.26530 -16.15757 -15.50374 -14.95032 -14.62130 -14.42021 -13.99985 -13.80018 -13.36596 -13.15897 -13.07549 -12.88575 -12.61045 -12.41354 -12.19924 -11.98987 -11.82346 -11.62617 -11.40777 -11.31667 -10.82492 -10.53426 -10.35279 -9.06117 -8.32115 -6.37490 1.33734 1.36537 1.47864 2.32835 2.61859 2.95856 3.02013 3.14257 3.59051 3.70728 3.78450 3.98029 4.08689 4.20462 4.32776 4.40344 4.50990 4.56244 4.75886 4.78911 4.81718 4.84991 4.94225 4.97630 5.04028 5.05239 5.16692 5.21092 5.28340 5.33106 5.50070 5.96228 6.33478 6.50826 6.62118 6.72067 7.27677 8.84694 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.005212 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.244004 B = 5370.624657 C = 5678.369429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.391 6.391 4 C 0.069 3.931 5 C -0.100 4.100 6 C -0.167 4.167 7 C -0.142 4.142 8 C 0.031 3.969 9 H 0.097 0.903 10 N -0.658 5.658 11 C 0.178 3.822 12 C -0.532 4.532 13 H 0.036 0.964 14 C 0.009 3.991 15 N -0.947 5.947 16 Si 0.953 3.047 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.250 1.250 20 C -0.096 4.096 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.088 0.912 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.336 0.664 32 H 0.027 0.973 33 H -0.011 1.011 34 H 0.269 0.731 35 H 0.063 0.937 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 -2.668 12.772 21.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.011 3.989 5 C -0.138 4.138 6 C -0.168 4.168 7 C -0.180 4.180 8 C -0.080 4.080 9 H 0.115 0.885 10 N -0.288 5.288 11 C 0.049 3.951 12 C -0.570 4.570 13 H 0.054 0.946 14 C -0.189 4.189 15 N -0.587 5.587 16 Si 0.776 3.224 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.173 1.173 20 C -0.134 4.134 21 H 0.080 0.920 22 H 0.076 0.924 23 H 0.107 0.893 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.155 0.845 32 H 0.045 0.955 33 H 0.007 0.993 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.021 -1.949 12.707 21.331 hybrid contribution 0.710 -1.311 -0.093 1.494 sum -16.311 -3.260 12.615 20.876 Atomic orbital electron populations 1.21757 0.92638 1.03340 1.02764 1.22716 0.96561 0.83206 1.00563 1.87905 1.20742 1.27695 1.94716 1.23515 0.80677 0.97645 0.97074 1.22963 0.96189 0.98513 0.96143 1.22241 0.90740 1.03476 1.00382 1.23068 1.01209 0.91804 1.01923 1.22441 0.91331 1.01564 0.92632 0.88528 1.60156 1.04787 1.58416 1.05421 1.19796 0.88262 0.91428 0.95594 1.21322 1.04643 1.36518 0.94561 0.94599 1.25891 0.98142 0.96272 0.98567 1.70056 1.19316 1.46278 1.23049 0.85627 0.77625 0.79324 0.79807 1.18968 1.20546 1.17330 1.22656 0.95906 0.98025 0.96805 0.91950 0.92384 0.89288 0.92605 0.93238 0.89537 0.88153 0.90545 0.89160 0.86843 0.84459 0.95478 0.99349 0.92257 0.91870 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.84 6.50 71.98 0.47 1.31 16 3 O -0.39 -9.37 10.35 -148.98 -1.54 -10.91 16 4 C 0.07 1.65 4.31 31.19 0.13 1.79 16 5 C -0.10 -2.24 7.93 30.98 0.25 -2.00 16 6 C -0.17 -4.50 2.98 -52.37 -0.16 -4.66 16 7 C -0.14 -3.96 10.46 30.45 0.32 -3.64 16 8 C 0.03 1.02 6.26 44.77 0.28 1.30 16 9 H 0.10 3.11 7.90 -2.38 -0.02 3.09 16 10 N -0.66 -27.58 6.73 -496.30 -3.34 -30.92 16 11 C 0.18 8.61 4.36 85.56 0.37 8.99 16 12 C -0.53 -31.33 9.87 25.60 0.25 -31.08 16 13 H 0.04 2.35 8.06 -2.91 -0.02 2.32 16 14 C 0.01 0.53 5.47 84.65 0.46 0.99 16 15 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 16 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 20 C -0.10 -2.56 7.75 30.98 0.24 -2.32 16 21 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 2.07 7.87 -2.39 -0.02 2.05 16 27 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.34 13.96 7.55 -89.69 -0.68 13.28 16 32 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 33 H -0.01 -0.52 7.57 -2.39 -0.02 -0.54 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.06 1.83 7.17 -2.38 -0.02 1.82 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -65.89 298.47 0.97 -64.93 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.31 Total: 20.96 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 3.36 Total: -30.73 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.04 Total: -90.19 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -1.54 Total: -10.91 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -65.89 0.97 -64.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721158651.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.393 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds