Wall clock time and date at job start Mon Mar 30 2020 03:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.50697 * 109.46820 * 119.99830 * 2 1 3 5 5 H 1.08008 * 119.99659 * 114.76190 * 4 2 1 6 6 C 1.37878 * 120.00517 * 294.75313 * 4 2 1 7 7 N 1.31521 * 119.99542 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46937 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47030 * 209.99927 * 8 6 4 11 11 H 1.48493 * 109.47459 * 330.00010 * 8 6 4 12 12 N 1.46897 * 109.47036 * 240.00197 * 2 1 3 13 13 C 1.47098 * 111.00122 * 63.87349 * 12 2 1 14 14 C 1.52923 * 108.50080 * 171.67205 * 13 12 2 15 15 C 1.51511 * 110.83539 * 58.63454 * 14 13 12 16 16 H 1.08990 * 108.94644 * 187.60872 * 15 14 13 17 17 O 1.42783 * 112.71310 * 67.71974 * 15 14 13 18 18 C 1.43576 * 109.32721 * 211.25317 * 17 15 14 19 19 C 1.54502 * 107.50098 * 1.99670 * 18 17 15 20 20 C 1.54173 * 112.17723 * 308.23714 * 15 14 13 21 21 H 1.08996 * 112.77114 * 282.26995 * 20 15 14 22 22 C 1.46551 * 111.00030 * 300.74110 * 12 2 1 23 23 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46858 * 299.99880 * 1 2 3 25 25 H 1.08997 * 109.46757 * 60.00197 * 1 2 3 26 26 H 0.96994 * 119.99716 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.63501 * 291.38041 * 13 12 2 28 28 H 1.08999 * 109.62765 * 51.77867 * 13 12 2 29 29 H 1.08997 * 109.20508 * 178.97834 * 14 13 12 30 30 H 1.09000 * 109.20905 * 298.28439 * 14 13 12 31 31 H 1.09002 * 109.84956 * 121.48844 * 18 17 15 32 32 H 1.09003 * 109.84641 * 242.51370 * 18 17 15 33 33 H 1.09001 * 110.91617 * 263.61166 * 19 18 17 34 34 H 1.09000 * 110.91583 * 139.98882 * 19 18 17 35 35 H 1.09004 * 109.23024 * 66.70599 * 22 12 2 36 36 H 1.09002 * 109.23187 * 307.33574 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5817 -1.6352 1.1336 6 6 1.7908 -0.1797 2.4799 7 7 1.1215 0.9464 2.5978 8 14 2.4140 -1.0599 4.0050 9 1 3.7776 -0.5730 4.3350 10 1 1.5011 -0.7844 5.1433 11 1 2.4588 -2.5220 3.7491 12 7 2.0197 -0.6924 -1.1994 13 6 1.6253 0.0261 -2.4209 14 6 2.3330 -0.6190 -3.6132 15 6 1.9728 -2.0864 -3.7243 16 1 2.5928 -2.5457 -4.4941 17 8 0.6048 -2.2931 -4.0774 18 6 0.1411 -3.5166 -3.4862 19 6 1.3046 -4.1009 -2.6545 20 6 2.1859 -2.8401 -2.3964 21 1 3.2338 -3.0720 -2.2064 22 6 1.5354 -2.0750 -1.2422 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.9512 1.3196 3.4767 27 1 0.5458 -0.0435 -2.5543 28 1 1.9177 1.0730 -2.3404 29 1 2.0344 -0.1063 -4.5276 30 1 3.4112 -0.5231 -3.4851 31 1 -0.7119 -3.3146 -2.8384 32 1 -0.1447 -4.2203 -4.2680 33 1 1.8539 -4.8493 -3.2258 34 1 0.9404 -4.5197 -1.7163 35 1 0.4538 -2.0725 -1.3774 36 1 1.7778 -2.5696 -0.3016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724828464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:40 Heat of formation + Delta-G solvation = -44.825375 kcal Electronic energy + Delta-G solvation = -16739.451653 eV Core-core repulsion = 14223.250151 eV Total energy + Delta-G solvation = -2516.201502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.14708 -36.84497 -33.35812 -32.41353 -31.41051 -28.11513 -28.03688 -25.21029 -23.77930 -22.81179 -21.11360 -20.16445 -18.58422 -16.42691 -16.03425 -15.53320 -15.01281 -14.61988 -14.39083 -14.03114 -13.20885 -12.78646 -12.72274 -12.14071 -11.99251 -11.74040 -11.52219 -11.29108 -11.26117 -10.97944 -10.72155 -10.65704 -10.40542 -10.23830 -10.08938 -9.76434 -9.58096 -9.13538 -8.78405 -8.38301 -7.10320 -6.00692 -4.03355 3.31305 3.37698 3.40280 4.06404 4.41917 4.64011 4.95049 5.08302 5.16099 5.31959 5.34150 5.48326 5.59200 5.77186 5.86626 5.88341 5.93440 6.08241 6.20136 6.22091 6.26251 6.48914 6.57418 6.65836 6.72201 6.83668 6.88472 7.15859 7.29766 7.52496 7.69558 7.83227 8.15007 8.41083 8.63078 9.02485 9.61222 11.07965 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.008324 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.108635 B = 3363.042593 C = 3651.001838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.043 0.957 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.053 3.947 14 C -0.109 4.109 15 C 0.089 3.911 16 H 0.050 0.950 17 O -0.379 6.379 18 C 0.053 3.947 19 C -0.155 4.155 20 C -0.113 4.113 21 H 0.098 0.902 22 C 0.068 3.932 23 H 0.028 0.972 24 H 0.077 0.923 25 H 0.010 0.990 26 H 0.260 0.740 27 H 0.032 0.968 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.028 0.972 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.349 -7.025 -10.181 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.061 0.939 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.076 4.076 14 C -0.147 4.147 15 C 0.032 3.968 16 H 0.068 0.932 17 O -0.299 6.299 18 C -0.024 4.024 19 C -0.193 4.193 20 C -0.132 4.132 21 H 0.116 0.884 22 C -0.061 4.061 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.677 -6.761 -10.137 12.203 hybrid contribution -0.564 -0.581 0.993 1.282 sum 0.113 -7.342 -9.144 11.727 Atomic orbital electron populations 1.22352 1.01113 0.99049 1.00091 1.19308 0.89513 0.94823 0.85966 0.93867 1.21109 1.34425 1.08437 0.89904 0.92035 1.24937 0.95318 0.95048 0.98975 1.69926 1.40550 1.19246 1.23573 0.86548 0.78631 0.79911 0.82592 1.20695 1.21400 1.20008 1.62500 1.59039 1.01238 1.02354 1.22010 0.97334 0.97710 0.90540 1.21301 1.01298 0.93581 0.98524 1.22202 0.82904 0.96685 0.95048 0.93236 1.88321 1.27172 1.41361 1.73024 1.23107 0.97095 0.86211 0.95959 1.23322 0.96921 0.98227 1.00844 1.22949 1.00286 0.94069 0.95888 0.88370 1.21922 0.96107 0.90859 0.97183 0.95281 0.90375 0.97057 0.93026 0.94951 0.91479 0.91872 0.90175 0.91578 0.92009 0.91061 0.89901 0.95362 0.89818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.30 37.16 0.31 -3.77 16 2 C 0.21 5.31 2.26 -68.86 -0.16 5.16 16 3 H 0.04 1.21 8.08 -51.93 -0.42 0.79 16 4 C -0.50 -13.60 7.89 -34.44 -0.27 -13.87 16 5 H 0.06 1.66 6.55 -52.48 -0.34 1.32 16 6 C 0.06 1.61 5.32 -17.82 -0.09 1.51 16 7 N -0.89 -25.59 11.72 55.43 0.65 -24.94 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.53 -11.41 4.67 -228.22 -1.07 -12.48 16 13 C 0.05 1.01 4.91 -3.76 -0.02 0.99 16 14 C -0.11 -1.73 5.81 -27.52 -0.16 -1.89 16 15 C 0.09 1.38 3.19 -26.87 -0.09 1.30 16 16 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 17 O -0.38 -6.27 11.01 -35.23 -0.39 -6.66 16 18 C 0.05 0.73 7.05 37.95 0.27 1.00 16 19 C -0.16 -2.03 6.38 -24.35 -0.16 -2.18 16 20 C -0.11 -1.78 3.85 -88.42 -0.34 -2.12 16 21 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 22 C 0.07 1.33 3.68 -4.02 -0.01 1.31 16 23 H 0.03 0.68 6.54 -51.93 -0.34 0.34 16 24 H 0.08 2.09 6.50 -51.93 -0.34 1.76 16 25 H 0.01 0.24 6.69 -51.93 -0.35 -0.11 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.66 6.81 -51.93 -0.35 0.30 16 28 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 0.93 7.87 -51.93 -0.41 0.53 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.05 7.97 -51.93 -0.41 0.64 16 35 H 0.03 0.58 5.46 -51.93 -0.28 0.29 16 36 H 0.08 1.78 6.18 -51.93 -0.32 1.46 16 LS Contribution 270.77 15.07 4.08 4.08 Total: -1.00 -28.67 270.77 -8.12 -36.79 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.66 Total: -0.49 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -0.72 Total: -12.57 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.42 Total: -37.42 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.39 Total: -6.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.67 -8.12 -36.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724828464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.035 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds