Wall clock time and date at job start Mon Mar 30 2020 03:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47077 * 2 1 4 4 C 1.50697 * 109.46820 * 119.99830 * 2 1 3 5 5 H 1.08008 * 119.99659 * 114.76190 * 4 2 1 6 6 C 1.37878 * 120.00517 * 294.75313 * 4 2 1 7 7 N 1.31521 * 119.99542 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00064 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46937 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47030 * 209.99927 * 8 6 4 11 11 H 1.48493 * 109.47459 * 330.00010 * 8 6 4 12 12 N 1.46897 * 109.47036 * 240.00197 * 2 1 3 13 13 C 1.47098 * 111.00122 * 63.87349 * 12 2 1 14 14 C 1.52923 * 108.50080 * 171.67205 * 13 12 2 15 15 C 1.51511 * 110.83539 * 58.63454 * 14 13 12 16 16 H 1.08990 * 108.94644 * 187.60872 * 15 14 13 17 17 O 1.42783 * 112.71310 * 67.71974 * 15 14 13 18 18 C 1.43576 * 109.32721 * 211.25317 * 17 15 14 19 19 C 1.54502 * 107.50098 * 1.99670 * 18 17 15 20 20 C 1.54173 * 112.17723 * 308.23714 * 15 14 13 21 21 H 1.08996 * 112.77114 * 282.26995 * 20 15 14 22 22 C 1.46551 * 111.00030 * 300.74110 * 12 2 1 23 23 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46858 * 299.99880 * 1 2 3 25 25 H 1.08997 * 109.46757 * 60.00197 * 1 2 3 26 26 H 0.96994 * 119.99716 * 179.97438 * 7 6 4 27 27 H 1.08995 * 109.63501 * 291.38041 * 13 12 2 28 28 H 1.08999 * 109.62765 * 51.77867 * 13 12 2 29 29 H 1.08997 * 109.20508 * 178.97834 * 14 13 12 30 30 H 1.09000 * 109.20905 * 298.28439 * 14 13 12 31 31 H 1.09002 * 109.84956 * 121.48844 * 18 17 15 32 32 H 1.09003 * 109.84641 * 242.51370 * 18 17 15 33 33 H 1.09001 * 110.91617 * 263.61166 * 19 18 17 34 34 H 1.09000 * 110.91583 * 139.98882 * 19 18 17 35 35 H 1.09004 * 109.23024 * 66.70599 * 22 12 2 36 36 H 1.09002 * 109.23187 * 307.33574 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5817 -1.6352 1.1336 6 6 1.7908 -0.1797 2.4799 7 7 1.1215 0.9464 2.5978 8 14 2.4140 -1.0599 4.0050 9 1 3.7776 -0.5730 4.3350 10 1 1.5011 -0.7844 5.1433 11 1 2.4588 -2.5220 3.7491 12 7 2.0197 -0.6924 -1.1994 13 6 1.6253 0.0261 -2.4209 14 6 2.3330 -0.6190 -3.6132 15 6 1.9728 -2.0864 -3.7243 16 1 2.5928 -2.5457 -4.4941 17 8 0.6048 -2.2931 -4.0774 18 6 0.1411 -3.5166 -3.4862 19 6 1.3046 -4.1009 -2.6545 20 6 2.1859 -2.8401 -2.3964 21 1 3.2338 -3.0720 -2.2064 22 6 1.5354 -2.0750 -1.2422 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.9512 1.3196 3.4767 27 1 0.5458 -0.0435 -2.5543 28 1 1.9177 1.0730 -2.3404 29 1 2.0344 -0.1063 -4.5276 30 1 3.4112 -0.5231 -3.4851 31 1 -0.7119 -3.3146 -2.8384 32 1 -0.1447 -4.2203 -4.2680 33 1 1.8539 -4.8493 -3.2258 34 1 0.9404 -4.5197 -1.7163 35 1 0.4538 -2.0725 -1.3774 36 1 1.7778 -2.5696 -0.3016 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724828464.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:40 Heat of formation + Delta-G solvation = -63.842021 kcal Electronic energy + Delta-G solvation = -16740.276277 eV Core-core repulsion = 14223.250151 eV Total energy + Delta-G solvation = -2517.026126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44323 -38.46743 -35.18831 -33.64473 -33.13615 -29.83675 -29.40056 -27.30036 -25.34270 -24.19710 -22.36314 -21.81527 -20.08143 -18.28528 -17.51938 -16.87740 -16.67286 -15.99480 -15.89984 -15.71425 -14.83315 -14.42520 -14.18670 -13.77706 -13.47176 -13.25295 -13.11332 -12.93528 -12.73654 -12.55648 -12.47878 -12.27369 -12.09890 -11.94664 -11.74007 -11.24992 -11.12822 -10.83353 -10.50549 -10.28483 -8.86553 -8.12152 -6.21957 1.42533 1.43152 1.53183 2.42800 2.92939 3.17183 3.29084 3.67390 3.82143 4.01793 4.17010 4.25836 4.34357 4.45714 4.48943 4.59944 4.71043 4.78144 4.82550 4.87274 4.92769 5.01364 5.04316 5.05690 5.12202 5.19011 5.25328 5.35438 5.52099 5.68543 5.73493 6.15734 6.17041 6.50534 6.74251 6.91959 7.46927 8.96138 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.038289 B = 0.008324 C = 0.007667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.108635 B = 3363.042593 C = 3651.001838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.213 3.787 3 H 0.008 0.992 4 C -0.512 4.512 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.266 1.266 12 N -0.534 5.534 13 C 0.053 3.947 14 C -0.105 4.105 15 C 0.087 3.913 16 H 0.078 0.922 17 O -0.400 6.400 18 C 0.047 3.953 19 C -0.145 4.145 20 C -0.113 4.113 21 H 0.108 0.892 22 C 0.073 3.927 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.021 0.979 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.015 0.985 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 -8.876 -11.248 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 H 0.026 0.974 4 C -0.551 4.551 5 H 0.078 0.922 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.257 5.257 13 C -0.075 4.075 14 C -0.142 4.142 15 C 0.030 3.970 16 H 0.096 0.904 17 O -0.321 6.321 18 C -0.029 4.029 19 C -0.183 4.183 20 C -0.132 4.132 21 H 0.126 0.874 22 C -0.055 4.055 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.033 0.967 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.485 -8.626 -11.222 14.232 hybrid contribution -0.843 0.029 1.288 1.540 sum 0.642 -8.597 -9.934 13.153 Atomic orbital electron populations 1.22138 1.00820 0.98743 0.99248 1.19068 0.89592 0.93217 0.87509 0.97446 1.21368 1.34377 1.08449 0.90891 0.92207 1.25741 0.95491 0.95734 1.01987 1.70056 1.41537 1.20558 1.24218 0.85523 0.78017 0.79124 0.78770 1.20243 1.21132 1.19050 1.62438 1.59050 1.02286 1.01944 1.22054 0.96884 0.97698 0.90901 1.21295 1.01455 0.94191 0.97283 1.22286 0.83118 0.96183 0.95436 0.90398 1.88299 1.27733 1.42726 1.73318 1.23272 0.96953 0.85917 0.96778 1.23308 0.96210 0.97487 1.01271 1.22935 1.00951 0.94971 0.94330 0.87359 1.21885 0.95700 0.89778 0.98123 0.95156 0.92980 0.95964 0.93018 0.96441 0.92106 0.90121 0.89134 0.92799 0.89284 0.88021 0.89842 0.96662 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.57 8.30 71.98 0.60 -6.97 16 2 C 0.21 11.11 2.26 44.17 0.10 11.21 16 3 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 4 C -0.51 -28.33 7.89 25.60 0.20 -28.13 16 5 H 0.06 3.26 6.55 -2.91 -0.02 3.24 16 6 C 0.01 0.49 5.32 84.65 0.45 0.94 16 7 N -0.92 -54.07 11.72 21.45 0.25 -53.82 16 8 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.53 -23.24 4.67 -875.94 -4.09 -27.33 16 13 C 0.05 2.02 4.91 86.24 0.42 2.44 16 14 C -0.10 -3.10 5.81 30.08 0.17 -2.93 16 15 C 0.09 2.44 3.19 30.50 0.10 2.54 16 16 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 17 O -0.40 -12.28 11.01 -148.98 -1.64 -13.92 16 18 C 0.05 1.18 7.05 72.49 0.51 1.69 16 19 C -0.14 -3.33 6.38 32.13 0.21 -3.13 16 20 C -0.11 -3.29 3.85 -9.37 -0.04 -3.33 16 21 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 22 C 0.07 2.85 3.68 86.37 0.32 3.16 16 23 H 0.03 1.47 6.54 -2.39 -0.02 1.45 16 24 H 0.05 2.88 6.50 -2.39 -0.02 2.87 16 25 H 0.02 1.02 6.69 -2.39 -0.02 1.00 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.02 0.71 6.81 -2.39 -0.02 0.69 16 28 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.92 7.97 -2.39 -0.02 1.90 16 35 H 0.02 0.63 5.46 -2.38 -0.01 0.61 16 36 H 0.06 2.63 6.18 -2.39 -0.01 2.62 16 Total: -1.00 -61.97 270.77 0.64 -61.33 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.05 Total: 10.37 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.04 Total: -22.50 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -3.84 Total: -81.15 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.64 Total: -13.92 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.97 0.64 -61.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724828464.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.509 kcal (2) G-P(sol) polarization free energy of solvation -61.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds