Wall clock time and date at job start Mon Mar 30 2020 03:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46899 * 2 1 4 4 C 1.50689 * 109.46915 * 239.99614 * 2 1 3 5 5 H 1.08001 * 120.00305 * 240.00012 * 4 2 1 6 6 C 1.37877 * 120.00329 * 60.00498 * 4 2 1 7 7 N 1.31516 * 119.99604 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00336 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47541 * 59.99641 * 8 6 4 10 10 H 1.48502 * 109.47308 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47110 * 299.99631 * 8 6 4 12 12 N 1.46902 * 109.46571 * 119.99821 * 2 1 3 13 13 C 1.46348 * 111.00401 * 58.95343 * 12 2 1 14 14 C 1.53854 * 111.71555 * 178.40296 * 13 12 2 15 15 C 1.51460 * 107.05867 * 56.22354 * 14 13 12 16 16 H 1.08999 * 109.66557 * 56.23635 * 15 14 13 17 17 O 1.42141 * 118.22254 * 182.51193 * 15 14 13 18 18 C 1.45132 * 105.10394 * 162.04580 * 17 15 14 19 19 C 1.55147 * 107.05697 * 332.90288 * 18 17 15 20 20 C 1.53109 * 102.99777 * 358.05998 * 19 18 17 21 21 H 1.09007 * 110.78800 * 269.66730 * 20 19 18 22 22 C 1.47772 * 110.94142 * 290.95321 * 12 2 1 23 23 H 1.08995 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46897 * 300.00420 * 1 2 3 25 25 H 1.08997 * 109.46932 * 60.00261 * 1 2 3 26 26 H 0.97008 * 119.99906 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.02854 * 57.82729 * 13 12 2 28 28 H 1.08997 * 108.96814 * 298.94210 * 13 12 2 29 29 H 1.08998 * 109.94122 * 296.83196 * 14 13 12 30 30 H 1.09005 * 110.00443 * 175.64850 * 14 13 12 31 31 H 1.08994 * 109.91492 * 213.54392 * 18 17 15 32 32 H 1.09004 * 109.91582 * 92.25706 * 18 17 15 33 33 H 1.09001 * 110.70946 * 116.43579 * 19 18 17 34 34 H 1.08999 * 110.70520 * 239.50321 * 19 18 17 35 35 H 1.08995 * 109.56027 * 65.51867 * 22 12 2 36 36 H 1.09003 * 110.34823 * 304.28188 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2303 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8270 -0.4201 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 1.5301 -2.0709 1.2460 14 6 2.0654 -2.8239 2.4762 15 6 1.6658 -2.0214 3.6970 16 1 0.5849 -1.8808 3.7059 17 8 2.0921 -2.4811 4.9727 18 6 1.9527 -1.3359 5.8532 19 6 2.0975 -0.0656 4.9742 20 6 2.3719 -0.6399 3.5817 21 1 3.4427 -0.7621 3.4178 22 6 1.7303 0.0925 2.4176 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.7083 1.1608 -3.4844 27 1 1.8494 -2.5920 0.3434 28 1 0.4408 -2.0590 1.2826 29 1 3.1512 -2.9013 2.4213 30 1 1.6241 -3.8195 2.5251 31 1 2.7350 -1.3536 6.6120 32 1 0.9714 -1.3494 6.3275 33 1 1.1736 0.5127 4.9774 34 1 2.9340 0.5449 5.3142 35 1 0.6521 0.1528 2.5654 36 1 2.1511 1.0944 2.3317 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724833538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:43 Heat of formation + Delta-G solvation = -40.051643 kcal Electronic energy + Delta-G solvation = -16476.447649 eV Core-core repulsion = 13960.453152 eV Total energy + Delta-G solvation = -2515.994498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12687 -37.16069 -33.57032 -32.25675 -31.39135 -28.65708 -27.69807 -25.25424 -23.19668 -22.91443 -21.33416 -20.18363 -19.08376 -16.21183 -15.86723 -15.55447 -15.15778 -14.94783 -14.40853 -14.02292 -13.42290 -12.93963 -12.68905 -12.60000 -11.92610 -11.75412 -11.46841 -11.26503 -11.08599 -10.87150 -10.68797 -10.59231 -10.54640 -10.29038 -10.05010 -9.83169 -9.69301 -9.35100 -8.87486 -8.38496 -7.06981 -6.01188 -4.05206 3.32866 3.37132 3.40148 3.90944 4.40241 4.71331 4.85396 4.89375 5.04236 5.29453 5.32899 5.45127 5.62088 5.63799 5.75533 5.82051 5.94390 6.00891 6.07980 6.18939 6.23511 6.38228 6.52947 6.62531 6.69993 6.81013 6.86230 7.07270 7.12880 7.49997 7.72557 7.83505 8.15595 8.38272 8.60530 9.00658 9.60074 11.05812 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.052705 B = 0.007011 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.127677 B = 3992.845479 C = 4259.856484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.216 3.784 3 H 0.039 0.961 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.546 5.546 13 C 0.074 3.926 14 C -0.107 4.107 15 C 0.070 3.930 16 H 0.054 0.946 17 O -0.373 6.373 18 C 0.047 3.953 19 C -0.149 4.149 20 C -0.121 4.121 21 H 0.091 0.909 22 C 0.074 3.926 23 H 0.030 0.970 24 H 0.006 0.994 25 H 0.088 0.912 26 H 0.261 0.739 27 H 0.090 0.910 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 -2.529 12.160 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.111 3.889 3 H 0.057 0.943 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.271 5.271 13 C -0.055 4.055 14 C -0.145 4.145 15 C 0.013 3.987 16 H 0.072 0.928 17 O -0.292 6.292 18 C -0.029 4.029 19 C -0.187 4.187 20 C -0.140 4.140 21 H 0.109 0.891 22 C -0.054 4.054 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.107 0.893 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.819 -2.655 12.024 12.341 hybrid contribution -0.750 -0.083 -0.781 1.086 sum 0.069 -2.738 11.243 11.572 Atomic orbital electron populations 1.22403 1.00979 0.99302 1.00460 1.19230 0.89632 0.94434 0.85650 0.94268 1.21107 1.30656 1.12555 0.89708 0.91932 1.24931 0.95209 0.95121 0.99007 1.69878 1.36984 1.23059 1.23508 0.86582 0.79243 0.79602 0.82096 1.20358 1.21418 1.20222 1.61351 1.62058 1.01232 1.02443 1.21837 0.96630 0.90151 0.96836 1.21542 1.02381 0.98178 0.92368 1.22648 0.97309 0.94281 0.84503 0.92761 1.88725 1.87424 1.33385 1.19692 1.23551 1.00938 0.85151 0.93284 1.22694 1.02641 0.97637 0.95745 1.22547 1.01872 0.96034 0.93564 0.89077 1.21745 0.96999 0.97074 0.89600 0.95129 0.97493 0.89329 0.92955 0.89226 0.95734 0.90708 0.91559 0.90086 0.92513 0.90845 0.90499 0.95446 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.36 37.16 0.31 -3.82 16 2 C 0.22 5.37 2.31 -68.86 -0.16 5.21 16 3 H 0.04 1.07 8.06 -51.93 -0.42 0.65 16 4 C -0.50 -13.54 7.90 -34.45 -0.27 -13.81 16 5 H 0.06 1.68 6.74 -52.49 -0.35 1.33 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.28 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.55 -11.58 4.46 -227.98 -1.02 -12.59 16 13 C 0.07 1.44 4.80 -3.68 -0.02 1.42 16 14 C -0.11 -1.77 6.11 -27.06 -0.17 -1.93 16 15 C 0.07 1.13 2.77 -26.14 -0.07 1.05 16 16 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 17 O -0.37 -5.86 11.52 -35.23 -0.41 -6.26 16 18 C 0.05 0.58 7.73 38.29 0.30 0.87 16 19 C -0.15 -1.83 6.70 -25.54 -0.17 -2.00 16 20 C -0.12 -1.88 2.78 -89.82 -0.25 -2.13 16 21 H 0.09 1.51 8.12 -51.92 -0.42 1.09 16 22 C 0.07 1.34 4.87 -3.97 -0.02 1.32 16 23 H 0.03 0.71 6.40 -51.93 -0.33 0.38 16 24 H 0.01 0.14 6.77 -51.93 -0.35 -0.22 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.09 1.88 6.41 -51.93 -0.33 1.54 16 28 H 0.02 0.49 6.29 -51.93 -0.33 0.16 16 29 H 0.07 1.26 8.12 -51.93 -0.42 0.83 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.50 6.76 -51.93 -0.35 0.15 16 36 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 LS Contribution 272.58 15.07 4.11 4.11 Total: -1.00 -28.09 272.58 -8.03 -36.12 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -5.71 Total: -0.56 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -0.62 Total: -12.32 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.39 Total: -37.25 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.41 Total: -6.26 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.09 -8.03 -36.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724833538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.935 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds